# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

---
resources:

  - type: bigquery_table
    table_id: cell_by_gene
    description: "The Merfish Mouse Brain Dataset"

dag:
  airflow_version: 2
  initialize:
    dag_id: cell_by_gene
    default_args:
      owner: "Google"
      depends_on_past: False
      start_date: '2022-08-20'
    max_active_runs: 1
    schedule_interval: "@weekly"
    catchup: False
    default_view: graph

  tasks:
    - operator: "GoogleCloudStorageToBigQueryOperator"
      description: "Task to load CSV data to a BigQuery table"
      args:
        task_id: "load_cell_by_gene_to_bq"
        bucket: "public-datasets-vizgen-merfish"
        source_objects: [
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice1/Replicate1/cell_by_gene_S1R1.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice1/Replicate2/cell_by_gene_S1R2.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice1/Replicate3/cell_by_gene_S1R3.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice2/Replicate1/cell_by_gene_S2R1.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice2/Replicate2/cell_by_gene_S2R2.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice2/Replicate3/cell_by_gene_S2R3.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice3/Replicate1/cell_by_gene_S3R1.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice3/Replicate2/cell_by_gene_S3R2.csv",
          "datasets/mouse_brain_map/BrainReceptorShowcase/Slice3/Replicate3/cell_by_gene_S3R3.csv"]
        source_format: "CSV"
        destination_project_dataset_table: "bigquery-public-data-dev.merfish.cell_by_gene"
        skip_leading_rows: 1
        allow_quoted_newlines: True
        write_disposition: "WRITE_TRUNCATE"
        schema_fields:
          - name: "Oxgr1"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr1a"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr1b"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr1d"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr1f"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr2a"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr2b"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr2c"
            type: "string"
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          - name: "Htr4"
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          - name: "Htr5a"
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            description: ""
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          - name: "Htr5b"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr6"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Htr7"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adora1"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adora2a"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adora2b"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adora3"
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          - name: "Adgra1"
            type: "string"
            description: ""
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          - name: "Adgra2"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adgra3"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adgrb1"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adgrb3"
            type: "string"
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          - name: "Adgre1"
            type: "string"
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          - name: "Adgre4"
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          - name: "Adgrf4"
            type: "string"
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            mode: "nullable"
          - name: "Adgrf5"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adgrl1"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adgrl2"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adgrl3"
            type: "string"
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          - name: "Adgrl4"
            type: "string"
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          - name: "Adgrd1"
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          - name: "Adgrf1"
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            description: ""
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            mode: "nullable"
          - name: "ADGRF3"
            type: "string"
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            mode: "nullable"
          - name: "Adgrg1"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Adgrg2"
            type: "string"
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            mode: "nullable"
          - name: "Adgrg4"
            type: "string"
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            mode: "nullable"
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          - name: "Adgrg6"
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          - name: "Adgrv1"
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          - name: "Mc2r"
            type: "string"
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          - name: "Adra1b"
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          - name: "Brs3"
            type: "string"
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          - name: "Ccr1l1"
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          - name: "Cxcr4"
            type: "string"
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          - name: "Cxcr6"
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          - name: "C5ar2"
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          - name: "Celsr1"
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          - name: "Celsr2"
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          - name: "Celsr3"
            type: "string"
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          - name: "Calcrl"
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          - name: "Calcr"
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          - name: "Crhr2"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Cx3cr1"
            type: "string"
            description: ""
            mode: "nullable"
          - name: "Cysltr1"
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          - name: "Cysltr2"
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          - name: "Drd1"
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          - name: "Drd5"
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          - name: "Drd3"
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            type: "string"
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  graph_paths:
    - "load_cell_by_gene_to_bq"
