datasets/open_targets/pipelines/copy_genetics_data/pipeline.yaml

# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

---

resources: ~

dag:
  airflow_version: 2
  initialize:
    dag_id: copy_genetics_data
    default_args:
      owner: "Google"
      depends_on_past: False
      start_date: '2022-04-01'
    max_active_runs: 1
    schedule_interval: "1 * 1 * *"
    catchup: False
    default_view: graph

  tasks:
    - operator: "KubernetesPodOperator"
      description: "Transfer Open Targets Genetics Dataset"
      args:
        task_id: "copy_bq_datasets"
        name: "copy_bq_datasets"
        namespace: "composer"
        service_account_name: "datasets"
        image_pull_policy: "Always"
        image: "{{ var.json.open_targets.container_registry.copy_bq_datasets }}"
        env_vars:
          SOURCE_PROJECT_ID: "{{ var.json.open_targets.genetics.source_project_id }}"
          TARGET_PROJECT_ID: "{{ var.json.open_targets.genetics.target_project_id }}"
          SERVICE_ACCOUNT: "{{ var.json.open_targets.service_account }}"
          TRANSFER_CONFIG_NAME: "open-targets-genetics"
          SOURCE_DATASET_NAME: "{{ var.json.open_targets.genetics.source_dataset_name }}"
          TARGET_DATASET_NAME: "{{ var.json.open_targets.genetics.target_dataset_name }}"
        resources:
          request_memory: "128M"
          request_cpu: "200m"
          request_ephemeral_storage: "5G"

  graph_paths:
    - "copy_bq_datasets"