python-batch/deepvariant/deepvariant.yaml

#  Copyright 2023 Google LLC
#
#  Licensed under the Apache License, Version 2.0 (the "License");
#  you may not use this file except in compliance with the License.
#  You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
#  Unless required by applicable law or agreed to in writing, software
#  distributed under the License is distributed on an "AS IS" BASIS,
#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#  See the License for the specific language governing permissions and
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project_id: "project_id"
region: "us-central1"

job_prefix: 'deepvariant-'
machine_type: "n1-standard-64"
volumes:
  - {bucket_name:  "<my_bucket>", gcs_path:  "/mnt/disks/work"}
  - {bucket_name:  "deepvariant", gcs_path:  "/mnt/disks/deepvariant"}

container: 
  image_uri: "gcr.io/deepvariant-docker/deepvariant:1.2.0"
  entry_point: "/bin/sh"
  commands: ["/mnt/disks/work/deepvariant.sh"]

task_count: 1 #optional
parallelism: 1 #optional
task_count_per_node: 1 #optional


labels: 
  env: "deepvariant"
  type: "1_2_0"