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unit: def load_stereo_chemical_props()
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unit: export default function SimpleDialog()
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unit: def get_dashboarddata()
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unit: def _parse_hhr_hit()
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unit: def _make_rigid_group_constants()
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unit: def convert_stockholm_to_a3m()
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unit: def make_atom14_dists_bounds()
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unit: def validate_input()
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unit: def parse_stockholm()
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unit: def _main()
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unit: def remove_empty_columns_from_stockholm_msa()
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unit: function calculateAcceleratorCount()
file: src/frontend/src/common/CommonFunctions.ts
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unit: def parse_hmmsearch_a3m()
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unit: def overwrite_b_factors()
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unit: def deduplicate_stockholm_msa()
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unit: def clean_and_validate_sequence()
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unit: def sequence_to_onehot()
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unit: def parse_a3m()
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unit: def _keep_line()
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unit: def run_data_pipeline()
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unit: def empty_placeholder_template_features()
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id: 29
unit: def predict_relax()
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id: 30
unit: def chi_angle_atom()
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id: 31
unit: def parse_fasta()
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id: 32
unit: def truncate_stockholm_msa()
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id: 33
unit: function convertArrayToMap()
file: src/frontend/src/common/CommonFunctions.ts
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id: 34
unit: def _parse_hmmsearch_description()
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id: 35
unit: def decide_accelerator_type()
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id: 36
unit: def _get_indices()
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id: 37
unit: def hhsearch()
file: src/components/hhsearch.py
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id: 38
unit: def run_hhsearch()
file: src/components/alphafold_utils.py
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id: 39
unit: def predict_relax()
file: src/components/predict_relax.py
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id: 40
unit: def predict()
file: src/components/model_predict.py
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id: 41
unit: function initValueInMap()
file: src/frontend/src/common/CommonFunctions.ts
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id: 42
unit: def check_fasta()
file: src/backend/main.py
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id: 43
unit: def get_pae_json()
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unit: def _read_msa()
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unit: def run_hmmsearch()
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id: 46
unit: def relax()
file: src/components/relax_protein.py
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id: 47
unit: def hmmsearch()
file: src/components/hmmsearch.py
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id: 48
unit: def get_filestore_info()
file: src/utils/compile_utils.py
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id: 49
unit: def upload_to_bucket()
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id: 50
unit: def valid_user()
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unit: def _make_standard_atom_mask()
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id: 52
unit: def __post_init__()
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id: 53
unit: def _update_hhr_residue_indices_list()
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unit: def parse_hhr()
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id: 55
unit: def parse_e_values_from_tblout()
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id: 56
unit: def predict()
file: src/components/alphafold_utils.py
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id: 57
unit: def relax_protein()
file: src/components/alphafold_utils.py
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id: 58
unit: def alphafold_inference_pipeline()
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id: 59
unit: def alphafold_inference_pipeline_seq()
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id: 60
unit: def download_file()
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id: 61
unit: def _make_rigid_transformation_4x4()
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id: 62
unit: def aggregate_features()
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id: 63
unit: def data_pipeline()
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unit: def _read_sequence()
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id: 65
unit: def alphafold_monomer_pipeline()
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id: 66
unit: def get_user_data()
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id: 67
unit: def _convert_sto_seq_to_a3m()
file: src/analysis/parsers.py
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id: 68
unit: def hhblits()
file: src/components/hhblits.py
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id: 69
unit: def jackhmmer()
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id: 70
unit: add()
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unit: addAll()
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unit: remove()
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unit: removeAll()
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id: 74
unit: def _get_hhr_line_regex_groups()
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id: 75
unit: def run_jackhmmer()
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unit: def run_hhblits()
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id: 77
unit: def configure_run()
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unit: def _maybe_bool()
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id: 79
unit: def reformatBucketUri()
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unit: def aggregate()
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id: 81
unit: def _get_fun_by_name()
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id: 82
unit: function showSnackbar()
file: src/frontend/src/App.tsx
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id: 83
unit: function checkAndExecuteFn()
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id: 84
unit: constructor()
file: src/frontend/src/common/CommonFunctions.ts
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id: 85
unit: def view_protein()
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id: 86
unit: def save_file_locally()
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id: 87
unit: def truncate()
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id: 88
unit: def _load_features()
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unit: def _read_template_features()
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id: 90
unit: def _convert_params()
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unit: def _copy_sequence()
file: src/utils/run_utils.py
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id: 92
unit: function isInvalidArray()
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id: 93
unit: constructor()
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unit: toArray()
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id: 97
unit: export default defineConfig()
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id: 98
unit: def formatUrlLink()
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id: 99
unit: def formatUrlAllStructures()
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id: 100
unit: def __len__()
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id: 101
unit: def validate_fasta_file()
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id: 102
unit: def AFportal()
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id: 103
unit: def get_clientid()
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