GoogleCloudPlatform / vertex-ai-alphafold-inference-pipeline

Intro

For duplication, we look at places in code where there are 6 or more lines of code that are exactly the same.
Before duplication is calculated, the code is cleaned to remove empty lines, comments, and frequently duplicated constructs such as imports.
You should aim at having as little as possible (<5%) of duplicated code as high-level of duplication can lead to maintenance difficulties, poor factoring, and logical contradictions.

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Duplication Overall

26% duplication:

6,249 cleaned lines of cleaned code (without empty lines, comments, and frequently duplicated constructs such as imports)
1,665 duplicated lines

2,208 duplicates

dependency graphs: 2D graph | 3D graph | 3D graph (with duplicates)...

Duplication per Extension

Duplication per Component (primary)

Duplication Between Components (50+ lines)

Download: SVG DOT (open online Graphviz editor)

From Component --> To Component	Duplicated Lines	File Pairs	Details
env-setup-portal (31%) --> env-setup (20%)	194	3 file pairs	details...

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Show more details on duplication between components...

Longest Duplicates

The list of 50 longest duplicates.

See data for all 2,208 duplicates...

Size	#	Folders	Files	Lines	Code
87	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	258:344 (21%) 255:341 (21%)	view
73	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	10:82 (18%) 10:82 (18%)	view
61	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	196:256 (15%) 193:253 (15%)	view
59	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	346:404 (14%) 343:401 (14%)	view
53	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	119:171 (13%) 118:170 (13%)	view
44	x 2	env-setup-portal env-setup	versions.tf versions.tf	1:46 (83%) 1:46 (83%)	view
33	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	85:117 (8%) 84:116 (8%)	view
29	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline.py alphafold_inference_pipeline_sequenti...	77:107 (29%) 67:97 (36%)	view
23	x 2	env-setup-portal env-setup	main.tf main.tf	37:59 (13%) 20:42 (88%)	view
19	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	29:47 (4%) 48:66 (3%)	view
19	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	29:47 (4%) 48:66 (3%)	view
18	x 2	src/frontend/src src/frontend/src	NewJob.tsx NewJob.tsx	439:456 (3%) 500:517 (3%)	view
17	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline.py alphafold_optimized_monomer.py	81:97 (17%) 104:120 (10%)	view
17	x 2	src/frontend/src src/frontend/src	NewJob.tsx NewJob.tsx	409:425 (3%) 470:486 (3%)	view
17	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline_sequenti... alphafold_optimized_monomer.py	71:87 (21%) 104:120 (10%)	view
15	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline.py alphafold_inference_pipeline_sequenti...	59:75 (15%) 49:65 (18%)	view
13	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	381:393 (3%) 547:559 (2%)	view
13	x 2	env-setup env-setup	pipeline_images.tf pipeline_images.tf	25:39 (26%) 47:61 (26%)	view
13	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	378:390 (3%) 547:559 (2%)	view
12	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	173:184 (2%) 172:183 (2%)	view
12	x 2	env-setup-portal env-setup	terraform-sample.tfvars terraform-sample.tfvars	2:13 (41%) 3:14 (46%)	view
10	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	17:26 (2%) 21:30 (1%)	view
10	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	17:26 (2%) 21:30 (1%)	view
10	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline.py alphafold_inference_pipeline_sequenti...	27:36 (10%) 24:33 (12%)	view
10	x 2	env-setup-portal env-setup	terraform-sample.tfvars terraform-sample.tfvars	17:26 (34%) 16:25 (38%)	view
9	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline.py alphafold_optimized_monomer.py	31:40 (9%) 55:64 (5%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	261:268 (1%) 319:326 (1%)	view
8	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	29:36 (1%) 241:248 (1%)	view
8	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	17:24 (1%) 362:369 (1%)	view
8	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	150:157 (1%) 32:39 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	29:36 (1%) 150:157 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	220:227 (1%) 246:253 (1%)	view
8	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline.py alphafold_optimized_monomer.py	127:134 (8%) 199:206 (4%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	220:227 (1%) 104:111 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	337:344 (1%) 241:248 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	337:344 (1%) 39:46 (1%)	view
8	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	150:157 (1%) 21:28 (1%)	view
8	x 2	ROOT ROOT	2-alphafold-metadata-exploration.ipynb 2-alphafold-metadata-exploration.ipynb	241:248 (1%) 346:353 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1-alphafold-quick-start.ipynb	17:24 (1%) 176:183 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	29:36 (1%) 175:182 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	337:344 (1%) 29:36 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	337:344 (1%) 217:224 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 2-alphafold-metadata-exploration.ipynb	176:183 (1%) 21:28 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1-alphafold-quick-start.ipynb	261:268 (1%) 290:297 (1%)	view
8	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	150:157 (1%) 58:65 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1-alphafold-quick-start.ipynb	261:268 (1%) 278:285 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	85:92 (1%) 39:46 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1-alphafold-quick-start.ipynb	278:285 (1%) 359:366 (1%)	view
8	x 2	ROOT ROOT	1-alphafold-quick-start.ipynb 1.1-alphafold-quick-start-multimer.ipynb	337:344 (1%) 17:24 (1%)	view
8	x 2	ROOT ROOT	1.1-alphafold-quick-start-multimer.ipynb 2-alphafold-metadata-exploration.ipynb	17:24 (1%) 399:406 (1%)	view

Duplicated Units

The list of top 1 duplicated units.

See data for all 1 unit duplicate

Size	#	Folders	Files	Lines	Code
7	x 2	src/pipelines src/pipelines	alphafold_inference_pipeline.py alphafold_inference_pipeline_sequenti...	0:0 0:0	view