GoogleCloudPlatform / vertex-ai-alphafold-inference-pipeline
File Size

The distribution of size of files (measured in lines of code).

Intro
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File Size Overall
0% | 18% | 40% | 14% | 25%
Legend:
1001+
501-1000
201-500
101-200
1-100


explore: grouped by folders | grouped by size | sunburst | 3D view
File Size per Extension
1001+
501-1000
201-500
101-200
1-100
py0% | 21% | 37% | 13% | 27%
ipynb0% | 41% | 58% | 0% | 0%
tsx0% | 0% | 67% | 10% | 21%
tf0% | 0% | 0% | 41% | 58%
ts0% | 0% | 0% | 70% | 29%
css0% | 0% | 0% | 0% | 100%
tfvars0% | 0% | 0% | 0% | 100%
html0% | 0% | 0% | 0% | 100%
yaml0% | 0% | 0% | 0% | 100%
File Size per Logical Decomposition
primary
1001+
501-1000
201-500
101-200
1-100
src0% | 15% | 42% | 14% | 27%
ROOT0% | 41% | 58% | 0% | 0%
env-setup-portal0% | 0% | 0% | 54% | 45%
env-setup0% | 0% | 0% | 25% | 74%
Longest Files (Top 50)
File# lines# units
residue_constants.py
in src/analysis
 678 7
570 -
NewJob.tsx
in src/frontend/src
 489 -
alphafold_utils.py
in src/components
 464 13
404 -
401 -
parsers.py
in src/analysis
 383 20
main.py
in src/backend
 320 16
JobResults.tsx
in src/frontend/src
 227 -
173 1
main.tf
in env-setup-portal
 170 -
notebook_utils.py
in src/analysis
 135 6
variables.tf
in env-setup
 121 -
CommonFunctions.ts
in src/frontend/src/common
 117 6
108 1
App.tsx
in src/frontend/src
 107 2
85 1
GoogleSignInButton.tsx
in src/frontend/src/components
 81 -
compile_utils.py
in src/utils
 77 3
run_utils.py
in src/utils
 75 4
data_pipeline.py
in src/components
 74 1
ResponsiveAppBar.tsx
in src/frontend/src/components
 74 1
SimpleDialog.tsx
in src/frontend/src/components
 72 1
configure_run.py
in src/components
 64 1
index.css
in src/frontend/src
 57 -
variables.tf
in env-setup-portal
 55 -
hhsearch.py
in src/components
 54 1
versions.tf
in env-setup
 53 -
predict_relax.py
in src/components
 53 1
versions.tf
in env-setup-portal
 53 -
hmmsearch.py
in src/components
 50 1
pipeline_images.tf
in env-setup
 49 -
model_predict.py
in src/components
 48 1
StringSet.ts
in src/frontend/src/common
 44 8
aggregate_features.py
in src/components
 43 1
relax_protein.py
in src/components
 43 1
hhblits.py
in src/components
 40 1
38 -
jackhmmer.py
in src/components
 38 1
34 -
config.py
in src
 32 -
network.tf
in env-setup
 30 -
utils.py
in src/analysis
 29 1
terraform-sample.tfvars
in env-setup-portal
 29 -
main.tf
in env-setup
 26 -
26 -
fasta_utils.py
in src/utils
 24 1
vertex-notebook.tf
in env-setup
 23 -
filestore.tf
in env-setup
 21 -
outputs.tf
in env-setup
 18 -
Files With Most Units (Top 28)
File# lines# units
parsers.py
in src/analysis
 383 20
main.py
in src/backend
 320 16
alphafold_utils.py
in src/components
 464 13
StringSet.ts
in src/frontend/src/common
 44 8
residue_constants.py
in src/analysis
 678 7
notebook_utils.py
in src/analysis
 135 6
CommonFunctions.ts
in src/frontend/src/common
 117 6
run_utils.py
in src/utils
 75 4
compile_utils.py
in src/utils
 77 3
App.tsx
in src/frontend/src
 107 2
utils.py
in src/analysis
 29 1
hhsearch.py
in src/components
 54 1
aggregate_features.py
in src/components
 43 1
hhblits.py
in src/components
 40 1
data_pipeline.py
in src/components
 74 1
relax_protein.py
in src/components
 43 1
predict_relax.py
in src/components
 53 1
configure_run.py
in src/components
 64 1
hmmsearch.py
in src/components
 50 1
jackhmmer.py
in src/components
 38 1
model_predict.py
in src/components
 48 1
108 1
85 1
173 1
fasta_utils.py
in src/utils
 24 1
SimpleDialog.tsx
in src/frontend/src/components
 72 1
ResponsiveAppBar.tsx
in src/frontend/src/components
 74 1
vite.config.ts
in src/frontend
 5 1
Files With Long Lines (Top 9)

There are 9 files with lines longer than 120 characters. In total, there are 53 long lines.

File# lines# units# long lines
404 - 14
401 - 14
570 - 12
main.py
in src/backend
 320 16 4
34 - 3
108 1 3
index.css
in src/frontend/src
 57 - 1
SimpleDialog.tsx
in src/frontend/src/components
 72 1 1
main.tf
in env-setup-portal
 170 - 1
Correlations

File Size vs. Commits (all time): 59 points

env-setup/main.tf x: 7 commits (all time) y: 26 lines of code env-setup/versions.tf x: 1 commits (all time) y: 53 lines of code 1-alphafold-quick-start.ipynb x: 26 commits (all time) y: 404 lines of code 1.1-alphafold-quick-start-multimer.ipynb x: 7 commits (all time) y: 401 lines of code src/analysis/residue_constants.py x: 1 commits (all time) y: 678 lines of code src/backend/main.py x: 9 commits (all time) y: 320 lines of code src/frontend/src/NewJob.tsx x: 5 commits (all time) y: 489 lines of code src/frontend/src/common/CommonFunctions.ts x: 3 commits (all time) y: 117 lines of code env-setup-portal/main.tf x: 11 commits (all time) y: 170 lines of code 2-alphafold-metadata-exploration.ipynb x: 13 commits (all time) y: 570 lines of code src/components/aggregate_features.py x: 7 commits (all time) y: 43 lines of code src/components/configure_run.py x: 5 commits (all time) y: 64 lines of code src/components/data_pipeline.py x: 6 commits (all time) y: 74 lines of code src/components/hhblits.py x: 4 commits (all time) y: 40 lines of code src/components/hhsearch.py x: 4 commits (all time) y: 54 lines of code src/components/hmmsearch.py x: 4 commits (all time) y: 50 lines of code src/components/model_predict.py x: 8 commits (all time) y: 48 lines of code src/components/predict_relax.py x: 10 commits (all time) y: 53 lines of code src/pipelines/alphafold_inference_pipeline.py x: 16 commits (all time) y: 108 lines of code src/pipelines/alphafold_inference_pipeline_sequential.py x: 12 commits (all time) y: 85 lines of code src/pipelines/alphafold_optimized_monomer.py x: 10 commits (all time) y: 173 lines of code src/setup.py x: 2 commits (all time) y: 7 lines of code src/utils/__init__.py x: 2 commits (all time) y: 1 lines of code env-setup-portal/output.tf x: 2 commits (all time) y: 3 lines of code env-setup-portal/terraform-sample.tfvars x: 2 commits (all time) y: 29 lines of code env-setup-portal/variables.tf x: 5 commits (all time) y: 55 lines of code env-setup/gcs_bucket.tf x: 6 commits (all time) y: 11 lines of code env-setup/local_provisioner.tf x: 6 commits (all time) y: 34 lines of code env-setup/network.tf x: 6 commits (all time) y: 30 lines of code env-setup/service_accounts.tf x: 5 commits (all time) y: 38 lines of code env-setup/terraform-sample.tfvars x: 5 commits (all time) y: 26 lines of code env-setup/variables.tf x: 5 commits (all time) y: 121 lines of code env-setup/vertex-notebook.tf x: 6 commits (all time) y: 23 lines of code src/backend/settings.py x: 3 commits (all time) y: 3 lines of code src/backend/templates/index.html x: 3 commits (all time) y: 16 lines of code src/config.py x: 16 commits (all time) y: 32 lines of code src/frontend/index.html x: 2 commits (all time) y: 13 lines of code src/frontend/src/App.tsx x: 2 commits (all time) y: 107 lines of code src/frontend/src/JobResults.tsx x: 4 commits (all time) y: 227 lines of code src/frontend/src/common/StringSet.ts x: 2 commits (all time) y: 44 lines of code src/frontend/src/components/GoogleSignInButton.tsx x: 2 commits (all time) y: 81 lines of code src/frontend/src/components/ResponsiveAppBar.tsx x: 3 commits (all time) y: 74 lines of code src/frontend/src/components/SimpleDialog.tsx x: 3 commits (all time) y: 72 lines of code src/frontend/src/index.css x: 3 commits (all time) y: 57 lines of code src/utils/fasta_utils.py x: 4 commits (all time) y: 24 lines of code env-setup/filestore.tf x: 4 commits (all time) y: 21 lines of code env-setup/outputs.tf x: 2 commits (all time) y: 18 lines of code src/components/alphafold_utils.py x: 6 commits (all time) y: 464 lines of code src/analysis/utils.py x: 1 commits (all time) y: 29 lines of code src/utils/compile_utils.py x: 2 commits (all time) y: 77 lines of code src/components/__init__.py x: 3 commits (all time) y: 9 lines of code
678.0
lines of code
  min: 1.0
  average: 102.54
  25th percentile: 24.0
  median: 49.0
  75th percentile: 85.0
  max: 678.0
0 26.0
commits (all time)
min: 1.0 | average: 5.29 | 25th percentile: 2.0 | median: 4.0 | 75th percentile: 6.0 | max: 26.0

File Size vs. Contributors (all time): 59 points

env-setup/main.tf x: 5 contributors (all time) y: 26 lines of code env-setup/versions.tf x: 1 contributors (all time) y: 53 lines of code 1-alphafold-quick-start.ipynb x: 13 contributors (all time) y: 404 lines of code 1.1-alphafold-quick-start-multimer.ipynb x: 7 contributors (all time) y: 401 lines of code src/analysis/residue_constants.py x: 1 contributors (all time) y: 678 lines of code src/backend/main.py x: 3 contributors (all time) y: 320 lines of code src/frontend/src/NewJob.tsx x: 3 contributors (all time) y: 489 lines of code src/frontend/src/common/CommonFunctions.ts x: 3 contributors (all time) y: 117 lines of code env-setup-portal/main.tf x: 3 contributors (all time) y: 170 lines of code 2-alphafold-metadata-exploration.ipynb x: 6 contributors (all time) y: 570 lines of code src/components/aggregate_features.py x: 5 contributors (all time) y: 43 lines of code src/components/configure_run.py x: 4 contributors (all time) y: 64 lines of code src/components/data_pipeline.py x: 5 contributors (all time) y: 74 lines of code src/components/hhblits.py x: 3 contributors (all time) y: 40 lines of code src/components/hhsearch.py x: 3 contributors (all time) y: 54 lines of code src/components/hmmsearch.py x: 3 contributors (all time) y: 50 lines of code src/components/model_predict.py x: 5 contributors (all time) y: 48 lines of code src/components/predict_relax.py x: 7 contributors (all time) y: 53 lines of code src/components/relax_protein.py x: 6 contributors (all time) y: 43 lines of code src/pipelines/alphafold_inference_pipeline.py x: 8 contributors (all time) y: 108 lines of code src/pipelines/alphafold_inference_pipeline_sequential.py x: 8 contributors (all time) y: 85 lines of code src/pipelines/alphafold_optimized_monomer.py x: 7 contributors (all time) y: 173 lines of code src/setup.py x: 2 contributors (all time) y: 7 lines of code src/utils/__init__.py x: 2 contributors (all time) y: 1 lines of code env-setup-portal/output.tf x: 2 contributors (all time) y: 3 lines of code env-setup-portal/terraform-sample.tfvars x: 2 contributors (all time) y: 29 lines of code env-setup-portal/variables.tf x: 2 contributors (all time) y: 55 lines of code env-setup/gcs_bucket.tf x: 4 contributors (all time) y: 11 lines of code env-setup/local_provisioner.tf x: 4 contributors (all time) y: 34 lines of code env-setup/network.tf x: 4 contributors (all time) y: 30 lines of code env-setup/pipeline_images.tf x: 2 contributors (all time) y: 49 lines of code env-setup/service_accounts.tf x: 4 contributors (all time) y: 38 lines of code env-setup/terraform-sample.tfvars x: 4 contributors (all time) y: 26 lines of code env-setup/variables.tf x: 4 contributors (all time) y: 121 lines of code env-setup/vertex-notebook.tf x: 4 contributors (all time) y: 23 lines of code src/backend/templates/index.html x: 2 contributors (all time) y: 16 lines of code src/config.py x: 10 contributors (all time) y: 32 lines of code src/frontend/index.html x: 2 contributors (all time) y: 13 lines of code src/frontend/src/App.tsx x: 2 contributors (all time) y: 107 lines of code src/frontend/src/JobResults.tsx x: 2 contributors (all time) y: 227 lines of code src/frontend/src/common/StringSet.ts x: 2 contributors (all time) y: 44 lines of code src/frontend/src/components/GoogleSignInButton.tsx x: 2 contributors (all time) y: 81 lines of code src/frontend/src/components/ResponsiveAppBar.tsx x: 2 contributors (all time) y: 74 lines of code src/frontend/src/components/SimpleDialog.tsx x: 2 contributors (all time) y: 72 lines of code src/frontend/src/index.css x: 2 contributors (all time) y: 57 lines of code env-setup/filestore.tf x: 2 contributors (all time) y: 21 lines of code env-setup/outputs.tf x: 2 contributors (all time) y: 18 lines of code env-setup/vertex-training-template.yaml x: 1 contributors (all time) y: 17 lines of code src/components/alphafold_utils.py x: 4 contributors (all time) y: 464 lines of code src/analysis/utils.py x: 1 contributors (all time) y: 29 lines of code src/utils/compile_utils.py x: 2 contributors (all time) y: 77 lines of code src/components/__init__.py x: 2 contributors (all time) y: 9 lines of code
678.0
lines of code
  min: 1.0
  average: 102.54
  25th percentile: 24.0
  median: 49.0
  75th percentile: 85.0
  max: 678.0
0 13.0
contributors (all time)
min: 1.0 | average: 3.51 | 25th percentile: 2.0 | median: 3.0 | 75th percentile: 4.0 | max: 13.0

File Size vs. Commits (30 days): 0 points

No data for "commits (30d)" vs. "lines of code".

File Size vs. Contributors (30 days): 0 points

No data for "contributors (30d)" vs. "lines of code".

File Size vs. Commits (90 days): 4 points

env-setup/main.tf x: 1 commits (90d) y: 26 lines of code env-setup/versions.tf x: 1 commits (90d) y: 53 lines of code 1-alphafold-quick-start.ipynb x: 1 commits (90d) y: 404 lines of code
404.0
lines of code
  min: 26.0
  average: 134.0
  25th percentile: 32.75
  median: 53.0
  75th percentile: 316.25
  max: 404.0
0 1.0
commits (90d)
min: 1.0 | average: 1.0 | 25th percentile: 1.0 | median: 1.0 | 75th percentile: 1.0 | max: 1.0

File Size vs. Contributors (90 days): 4 points

env-setup/main.tf x: 1 contributors (90d) y: 26 lines of code env-setup/versions.tf x: 1 contributors (90d) y: 53 lines of code 1-alphafold-quick-start.ipynb x: 1 contributors (90d) y: 404 lines of code
404.0
lines of code
  min: 26.0
  average: 134.0
  25th percentile: 32.75
  median: 53.0
  75th percentile: 316.25
  max: 404.0
0 1.0
contributors (90d)
min: 1.0 | average: 1.0 | 25th percentile: 1.0 | median: 1.0 | 75th percentile: 1.0 | max: 1.0