def parse_e_values_from_tblout()

in src/analysis/parsers.py [0:0]

• 9 lines of code
• 5 McCabe index (conditional complexity)

def parse_e_values_from_tblout(tblout: str) -> Dict[str, float]:
  """Parse target to e-value mapping parsed from Jackhmmer tblout string."""
  e_values = {'query': 0}
  lines = [line for line in tblout.splitlines() if line[0] != '#']
  # As per http://eddylab.org/software/hmmer/Userguide.pdf fields are
  # space-delimited. Relevant fields are (1) target name:  and
  # (5) E-value (full sequence) (numbering from 1).
  for line in lines:
    fields = line.split()
    e_value = fields[4]
    target_name = fields[0]
    e_values[target_name] = float(e_value)
  return e_values