Path	Lines of Code
ClstrSearch/README.md	22
ClstrSearch/merge/m3_edges.txt	7111
ClstrSearch/merge/m3_vertices.txt	768
ClstrSearch/merge/median_evalue.txt	7103
ClstrSearch/merge/merge_by_m3_result.txt	767
PostProcessingWorkflow.md	74
PostProcessingWorkflow_zh.md	67
config/rdrp_40_extend/protein/binary_class/cheer_config.json	18
config/rdrp_40_extend/protein/binary_class/dnn_config.json	10
config/rdrp_40_extend/protein/binary_class/embedding_config.json	10
config/rdrp_40_extend/protein/binary_class/lgbm_config.json	10
config/rdrp_40_extend/protein/binary_class/sefn_config.json	31
config/rdrp_40_extend/protein/binary_class/sequence_config.json	26
config/rdrp_40_extend/protein/binary_class/ssfn_config.json	35
config/rdrp_40_extend/protein/binary_class/structure_config.json	14
config/rdrp_40_extend/protein/binary_class/virhunter_config.json	17
config/rdrp_40_extend/protein/binary_class/virseeker_config.json	19
config/rdrp_40_extend/protein/binary_class/virtifier_config.json	22
config/rdrp_40_extend/protein/binary_class/xgb_config.json	15
dataset/rdrp_40_extend/protein/binary_class/label.txt	3
logs/rdrp_40_extend/protein/binary_class/sefn/20230201140320/label.txt	3
models/rdrp_40_extend/protein/binary_class/sefn/20230201140320/checkpoint-100000/config.json	44
models/rdrp_40_extend/protein/binary_class/sefn/20230201140320/checkpoint-100000/sequence/special_tokens_map.json	7
models/rdrp_40_extend/protein/binary_class/sefn/20230201140320/checkpoint-100000/sequence/tokenizer_config.json	14
requirements.txt	43
requirements_simple.txt	40
src/SSFN/README.md	75
src/geo_map/data/position_lat_lon_manual.txt	47
src/geo_map/data/sra_lat_lon_manual.txt	50
src/geo_map/data/sra_manual_biosample_01_done.txt	69
src/geo_map/data/sra_manual_biosample_02_done.txt	69
src/geo_map/data/sra_manual_biosample_03_done.txt	69
src/geo_map/data/sra_manual_biosample_04_done.txt	68
src/geo_map/data/sra_manual_biosample_05_done.txt	21
src/geo_map/data/undo_sra_none.txt	206
src/geo_map/data/undo_sra_none_latlon.txt	171
struct_vocab/rdrp_40_extend/protein/binary_class/struct_vocab.txt	28
vocab/rdrp_40_extend/protein/binary_class/deep_baselines_vocab.txt	28
vocab/rdrp_40_extend/protein/binary_class/vocab.txt	32