path	# lines of code
src/predict.py	889
src/run.py	735
src/common/loss.py	150
src/common/metrics.py	419
src/common/multi_label_metrics.py	428
src/deep_baselines/run.py	778
src/deep_baselines/virhunter.py	212
src/deep_baselines/statistics.py	79
src/deep_baselines/virtifier.py	227
src/deep_baselines/virseeker.py	209
src/deep_baselines/predict_deep_baselines.py	546
src/deep_baselines/cheer.py	497
src/trainer.py	369
src/predictor.py	251
src/result_process/process_predict_result.py	162
src/data_preprocess/data_preprocess_for_rdrp_v2.py	256
src/data_preprocess/tf_records_generator.py	207
src/data_preprocess/data_preprocess_for_rdrp_v1.py	711
src/data_preprocess/verify_train_dataset.py	52
src/data_preprocess/data_preprocess_for_rdrp_v3_extend.py	492
src/data_preprocess/ncbi_id_2_uniprot.py	308
src/data_preprocess/data_preprocess_into_tfrecords_for_rdrp.py	252
src/data_preprocess/subword.py	190
src/predict_one_sample.py	683
src/geo_map/get_biosample_from_manual.py	86
src/geo_map/extract_attr_from_biosample_page.py	69
src/geo_map/download_biosample_page.py	52
src/geo_map/get_biosample_from_update.py	87
src/geo_map/self_testing_nearest_station_antarctica.py	71
src/geo_map/standardization_lat_lon_info.py	291
src/geo_map/parse_loc_lat_lon_from_attr.py	232
src/geo_map/get_biosample_from_entrez.py	156
src/app/args.py	12
src/app/templates/index.html	148
src/app/app.py	620
src/protein_structure/merge_embedding_pdb_result.py	177
src/protein_structure/embedding_from_esmfold.py	337
src/protein_structure/sampling_verify_embedding_is_ok.py	45
src/protein_structure/predict_structure.py	203
src/protein_structure/structure_from_esm_v1.py	447
src/data_loader.py	1344
src/predict_many_samples.py	708
src/biotoolbox/contact_map_builder.py	229
src/biotoolbox/contact_map_generator.py	100
src/biotoolbox/structure_file_reader.py	129
src/SSFN/modeling_bert.py	1338
src/SSFN/pooling.py	259
src/SSFN/layers.py	135
src/SSFN/gcn.py	66
src/SSFN/model.py	394
src/plot/plot_map_pie_fig_aff4_1.py	77
src/plot/plot_map_pie_fig_aff4_2.py	319
src/plot/plot_map_pie_fig4_1.py	285
src/plot/plot_map_pie_fig4_2.py	304
src/baselines/predict.py	205
src/baselines/lgbm.py	602
src/baselines/xgb.py	566
src/baselines/dnn.py	805
src/utils.py	376
src/evaluater.py	184