path	# lines of code	# active days	days since first update	days since last update	# commits	# contributors	first updated	last updated	first contributor	last contributor
src/predict.py	889	8	760	14	18	3	2023-04-16	2025-05-01	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/run.py	735	9	760	15	18	3	2023-04-16	2025-04-30	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/common/loss.py	150	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/common/metrics.py	419	3	760	358	7	2	2023-04-16	2024-05-22	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/common/multi_label_metrics.py	428	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/deep_baselines/run.py	778	3	760	668	6	2	2023-04-16	2023-07-17	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/deep_baselines/virhunter.py	212	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/deep_baselines/statistics.py	79	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/deep_baselines/virtifier.py	227	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/deep_baselines/virseeker.py	209	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/deep_baselines/predict_deep_baselines.py	546	6	760	14	12	3	2023-04-16	2025-05-01	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/deep_baselines/cheer.py	497	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/trainer.py	369	3	760	146	6	2	2023-04-16	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/predictor.py	251	2	760	19	4	3	2023-04-16	2025-04-26	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/result_process/process_predict_result.py	162	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/data_preprocess_for_rdrp_v2.py	256	1	146	146	2	2	2024-12-20	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/tf_records_generator.py	207	2	760	146	4	2	2023-04-16	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/data_preprocess_for_rdrp_v1.py	711	1	146	146	2	2	2024-12-20	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/verify_train_dataset.py	52	2	760	146	4	2	2023-04-16	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/data_preprocess_for_rdrp_v3_extend.py	492	2	146	19	5	3	2024-12-20	2025-04-26	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/ncbi_id_2_uniprot.py	308	2	760	146	4	2	2023-04-16	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/data_preprocess_into_tfrecords_for_rdrp.py	252	4	760	19	8	3	2023-04-16	2025-04-26	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_preprocess/subword.py	190	3	760	146	6	2	2023-04-16	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/predict_one_sample.py	683	11	760	14	24	4	2023-04-16	2025-05-01	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/get_biosample_from_manual.py	86	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/extract_attr_from_biosample_page.py	69	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/download_biosample_page.py	52	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/get_biosample_from_update.py	87	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/self_testing_nearest_station_antarctica.py	71	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/standardization_lat_lon_info.py	291	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/parse_loc_lat_lon_from_attr.py	232	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/geo_map/get_biosample_from_entrez.py	156	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/app/args.py	12	1	14	14	2	2	2025-05-01	2025-05-01	153056894+lucaone@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/app/templates/index.html	148	1	14	14	2	2	2025-05-01	2025-05-01	153056894+lucaone@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/app/app.py	620	1	14	14	2	2	2025-05-01	2025-05-01	153056894+lucaone@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/protein_structure/merge_embedding_pdb_result.py	177	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/protein_structure/embedding_from_esmfold.py	337	3	760	668	6	2	2023-04-16	2023-07-17	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/protein_structure/sampling_verify_embedding_is_ok.py	45	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/protein_structure/predict_structure.py	203	7	760	195	13	2	2023-04-16	2024-11-01	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/protein_structure/structure_from_esm_v1.py	447	4	760	146	8	2	2023-04-16	2024-12-20	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/data_loader.py	1344	3	760	19	8	3	2023-04-16	2025-04-26	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/predict_many_samples.py	708	9	748	14	17	3	2023-04-28	2025-05-01	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/biotoolbox/contact_map_builder.py	229	2	760	363	4	2	2023-04-16	2024-05-17	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/biotoolbox/contact_map_generator.py	100	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/biotoolbox/structure_file_reader.py	129	2	760	363	4	2	2023-04-16	2024-05-17	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/SSFN/modeling_bert.py	1338	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/SSFN/pooling.py	259	7	760	231	12	2	2023-04-16	2024-09-26	61005150+non-name-2020@users.noreply.github.com	61005150+non-name-2020@users.noreply.github.com
src/SSFN/layers.py	135	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/SSFN/gcn.py	66	2	760	747	4	2	2023-04-16	2023-04-29	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/SSFN/model.py	394	7	760	97	16	3	2023-04-16	2025-02-07	61005150+non-name-2020@users.noreply.github.com	61005150+non-name-2020@users.noreply.github.com
src/plot/plot_map_pie_fig_aff4_1.py	77	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/plot/plot_map_pie_fig_aff4_2.py	319	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/plot/plot_map_pie_fig4_1.py	285	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/plot/plot_map_pie_fig4_2.py	304	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/baselines/predict.py	205	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/baselines/lgbm.py	602	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/baselines/xgb.py	566	1	760	760	2	2	2023-04-16	2023-04-16	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/baselines/dnn.py	805	2	760	752	4	2	2023-04-16	2023-04-24	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/utils.py	376	7	760	14	13	4	2023-04-16	2025-05-01	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com
src/evaluater.py	184	3	760	19	6	3	2023-04-16	2025-04-26	61005150+non-name-2020@users.noreply.github.com	sanyuan.hy@alibaba-inc.com