in functions/source/job-creation/job_creation.py [0:0]
def map_pathogen_name_to_id(pathogen_name):
"""
"""
mapping = {
"Acinetobacter baumannii": "p00",
"Baceroides fragilis": "p01",
"Burkholderia cepacia": "p02",
"Candida albicans": "p03",
"Candida giabrata": "p04",
"Candida parapsilosis": "p05",
"Candida tropicalis": "p06",
"Citrobacter diversus": "p07",
"Citrobacter freundii": "p08",
"Citrobacter koseri": "p09",
"Clostridium difficile": "p10",
"Enterobacter aerogenes": "p11",
"Enterobacter cloacae": "p12",
"Enterococcus faecalis": "p13",
"Enterococcus faecium": "p14",
"Escherichia coli": "p15",
"Haemophilus influenzae": "p16",
"Klebsiella oxytoca": "p17",
"Klebsiella pneumoniae": "p18",
"Moraxella catarrhalis": "p19",
"Morganella morganii": "p20",
"Proteaus mirabilis": "p21",
"Pseudomonas aeruginosa": "p22",
"Serratia marcescens": "p23",
"Staphylococcus aureus (MSSA, MRSA)": "p24",
"Staphylococcus auricularis": "p25",
"Staphylococcus capitis ssp. capitis": "p26",
"Staphylococcus capitis ssp. unspecified": "p27",
"Staphylococcus coagulase negative": "p28",
"Staphylococcus cohnii": "p29",
"Staphylococcus epidermidis": "p30",
"Staphylococcus gallinarum": "p31",
"Staphylococcus haemolyticus": "p32",
"Staphylococcus hominis": "p33",
"Staphylococcus lentus": "p34",
"Staphylococcus lugdenensis": "p35",
"Staphylococcus saccharolyticus": "p36",
"Staphylococcus saprophyticus": "p37",
"Staphylococcus schleiferi": "p38",
"Staphylococcus sciuri": "p39",
"Staphylococcus simulans": "p40",
"Staphylococcus warneri": "p41",
"Staphylococcus xylosus": "p42",
"Stenotrophomonas maltophilia": "p43",
"Streptococcus group A (Streptococcus pyogenes)": "p44",
"Streptococcus group B (Streptococcus agalactiae)": "p45",
"Streptococcus group D (Sterptococcus bovis)": "p46",
"Streptococcus pneumoniae (pneumococcus)": "p47",
"Strepotcuccus viridans (includes angiosus, bovis, mitis, mutans, salivarius)": "p49",
"Torulopsis glabrata (Candida glabrata)": "p48",
"Other pathogen": "p50",
}
pathogen = pathogen_name
if pathogen_name in mapping:
pathogen = mapping[pathogen_name]
return pathogen