in functions/source/loop/loop_lambda.py [0:0]
def map_pathogen_id_to_name(pathogen_id):
"""
"""
mapping = {
"p00": "Acinetobacter baumannii",
"p01": "Baceroides fragilis",
"p02": "Burkholderia cepacia",
"p03": "Candida albicans",
"p04": "Candida giabrata",
"p05": "Candida parapsilosis",
"p06": "Candida tropicalis",
"p07": "Citrobacter diversus",
"p08": "Citrobacter freundii",
"p09": "Citrobacter koseri",
"p10": "Clostridium difficile",
"p11": "Enterobacter aerogenes",
"p12": "Enterobacter cloacae",
"p13": "Enterococcus faecalis",
"p14": "Enterococcus faecium",
"p15": "Escherichia coli",
"p16": "Haemophilus influenzae",
"p17": "Klebsiella oxytoca",
"p18": "Klebsiella pneumoniae",
"p19": "Moraxella catarrhalis",
"p20": "Morganella morganii",
"p21": "Proteaus mirabilis",
"p22": "Pseudomonas aeruginosa",
"p23": "Serratia marcescens",
"p24": "Staphylococcus aureus (MSSA, MRSA)",
"p25": "Staphylococcus auricularis",
"p26": "Staphylococcus capitis ssp. capitis",
"p27": "Staphylococcus capitis ssp. unspecified",
"p28": "Staphylococcus coagulase negative",
"p29": "Staphylococcus cohnii",
"p30": "Staphylococcus epidermidis",
"p31": "Staphylococcus gallinarum",
"p32": "Staphylococcus haemolyticus",
"p33": "Staphylococcus hominis",
"p34": "Staphylococcus lentus",
"p35": "Staphylococcus lugdenensis",
"p36": "Staphylococcus saccharolyticus",
"p37": "Staphylococcus saprophyticus",
"p38": "Staphylococcus schleiferi",
"p39": "Staphylococcus sciuri",
"p40": "Staphylococcus simulans",
"p41": "Staphylococcus warneri",
"p42": "Staphylococcus xylosus",
"p43": "Stenotrophomonas maltophilia",
"p44": "Streptococcus group A (Streptococcus pyogenes)",
"p45": "Streptococcus group B (Streptococcus agalactiae)",
"p46": "Streptococcus group D (Sterptococcus bovis)",
"p47": "Streptococcus pneumoniae (pneumococcus)",
"p49": "Strepotcuccus viridans (includes angiosus, bovis, mitis, mutans, salivarius)",
"p48": "Torulopsis glabrata (Candida glabrata)",
"p50": "Other pathogen",
}
pathogen = ''
if pathogen_id in mapping:
pathogen = mapping[pathogen_id]
return pathogen