Path	Lines of Code
environment.yaml	15
main.py	63
mkdocs.yml	53
src/aws-genomics-cdk/jest.config.js	7
src/aws-genomics-cdk/lib/aws-genomics-cdk-stack.ts	59
src/aws-genomics-cdk/lib/batch/batch-compute-environmnet-construct.ts	60
src/aws-genomics-cdk/lib/batch/batch-iam-stack.ts	65
src/aws-genomics-cdk/lib/batch/batch-stack.ts	87
src/aws-genomics-cdk/lib/batch/job-queue-construct.ts	31
src/aws-genomics-cdk/lib/batch/launch-template-construct.ts	52
src/aws-genomics-cdk/lib/vpc/vpc-stack.ts	27
src/aws-genomics-cdk/lib/workflows/genomics-task-construct.ts	44
src/aws-genomics-cdk/lib/workflows/job-definition-construct.ts	49
src/aws-genomics-cdk/lib/workflows/job-definitions.ts	122
src/aws-genomics-cdk/lib/workflows/variant-calling-stack.ts	242
src/aws-genomics-cdk/lib/workflows/workflow-config.ts	4
src/containers/buildspec-nextflow.yml	16
src/containers/buildspec-workflow-tool.yml	17
src/gwf-core-codepipeline/jest.config.js	7
src/gwf-core-codepipeline/lib/aws-genomics-workflow-code-build-stack.ts	124
src/lambda/codebuild/lambda.py	57
src/lambda/ecr/lambda.py	73
src/scripts/nf-aws.py	115
src/templates/_common/container-build.template.yaml	400
src/templates/cromwell/cromwell-and-core.template.yaml	292
src/templates/cromwell/cromwell-resources.template.yaml	652
src/templates/gwfcore/gwfcore-batch.template.yaml	255
src/templates/gwfcore/gwfcore-code.template.yaml	388
src/templates/gwfcore/gwfcore-efs.template.yaml	100
src/templates/gwfcore/gwfcore-iam.template.yaml	180
src/templates/gwfcore/gwfcore-launch-template.template.yaml	182
src/templates/gwfcore/gwfcore-root.template.yaml	381
src/templates/gwfcore/gwfcore-s3.template.yaml	70
src/templates/nextflow/nextflow-and-core.template.yaml	289
src/templates/nextflow/nextflow-resources.template.yaml	263
src/templates/step-functions/sfn-resources-state-machine.template.yaml	262
src/templates/step-functions/sfn-resources.template.yaml	176