in src/aws-genomics-cdk/lib/workflows/genomics-task-construct.ts [19:51]
constructor(scope: cdk.Construct, id: string, props: GenomicsTaskProps) {
super(scope, id);
const defaultEnvironment = {
JOB_WORKFLOW_NAME: sfn.JsonPath.stringAt("$$.StateMachine.Name"),
JOB_WORKFLOW_EXECUTION: sfn.JsonPath.stringAt("$$.Execution.Name"),
JOB_OUTPUT_PREFIX: sfn.JsonPath.stringAt("$.params.environment.JOB_OUTPUT_PREFIX"),
JOB_AWS_CLI_PATH: props.awsCliPath ?? "/opt/aws-cli/bin"
}
let environment;
if(props.environment){
environment = {...defaultEnvironment, ...props.environment};
}
else{
environment = defaultEnvironment;
}
const taskContainerProps = {
command: props.command,
environment: environment
};
const taskProps = {
jobName: props.taskName,
jobDefinitionArn: props.jobDefinition.jobDefinitionArn,
jobQueueArn: props.queue.jobQueueArn,
containerOverrides: taskContainerProps,
inputPath: "$",
resultPath: "$.result"
};
this.task = new tasks.BatchSubmitJob(this, taskProps.jobName, taskProps);
}