id: 1 unit: constructor() file: main/cdk/process-plate-stack.ts start line: 58 end line: 493 size: 354 LOC McCabe index: 1 number of parameters: 3 id: 2 unit: constructor() file: main/cdk/resource-permissions-stack.ts start line: 81 end line: 379 size: 233 LOC McCabe index: 1 number of parameters: 3 id: 3 unit: constructor() file: main/cdk/train-stack.ts start line: 32 end line: 290 size: 212 LOC McCabe index: 1 number of parameters: 3 id: 4 unit: constructor() file: main/cdk/embedding-stack.ts start line: 32 end line: 285 size: 205 LOC McCabe index: 1 number of parameters: 3 id: 5 unit: constructor() file: datasets/bbbc-021/cdk/bbbc-021-stack.ts start line: 13 end line: 190 size: 138 LOC McCabe index: 1 number of parameters: 3 id: 6 unit: private void searchByImageId() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 331 end line: 475 size: 129 LOC McCabe index: 29 number of parameters: 1 id: 7 unit: def _train() file: datasets/bbbc-021/scripts/bbbc021-1-train-script.py start line: 0 end line: 0 size: 123 LOC McCabe index: 24 number of parameters: 1 id: 8 unit: def handler() file: main/src/image-artifact/lambda/default-artifact/default-artifact.py start line: 0 end line: 0 size: 121 LOC McCabe index: 14 number of parameters: 2 id: 9 unit: def handler() file: main/src/embedding-compute/embedding-compute.py start line: 0 end line: 0 size: 114 LOC McCabe index: 13 number of parameters: 2 id: 10 unit: constructor() file: main/cdk/search-stack.ts start line: 37 end line: 168 size: 108 LOC McCabe index: 3 number of parameters: 3 id: 11 unit: export function createTrainPlateVisitor() file: main/cdk/process-plate-stack.ts start line: 506 end line: 614 size: 91 LOC McCabe index: 1 number of parameters: 7 id: 12 unit: async function populateSourcePlate() file: main/src/image-management/image-management.ts start line: 191 end line: 291 size: 91 LOC McCabe index: 13 number of parameters: 2 id: 13 unit: export function createEmbeddingPlateVisitor() file: main/cdk/process-plate-stack.ts start line: 616 end line: 701 size: 76 LOC McCabe index: 1 number of parameters: 7 id: 14 unit: def handler() file: main/src/training-compute/training-compute.py start line: 0 end line: 0 size: 76 LOC McCabe index: 3 number of parameters: 2 id: 15 unit: constructor() file: main/cdk/image-management-stack.ts start line: 27 end line: 112 size: 75 LOC McCabe index: 3 number of parameters: 3 id: 16 unit: def load_training_data() file: datasets/bbbc-021/scripts/bbbc021-1-train-script.py start line: 0 end line: 0 size: 74 LOC McCabe index: 10 number of parameters: 1 id: 17 unit: private void start() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 145 end line: 215 size: 69 LOC McCabe index: 11 number of parameters: 0 id: 18 unit: def handler() file: main/src/training-build/training-build.py start line: 0 end line: 0 size: 61 LOC McCabe index: 13 number of parameters: 2 id: 19 unit: async function updatePlateStatus() file: main/src/image-management/image-management.ts start line: 517 end line: 579 size: 59 LOC McCabe index: 1 number of parameters: 6 id: 20 unit: async function submitSearch() file: main/src/search/search.ts start line: 116 end line: 184 size: 58 LOC McCabe index: 9 number of parameters: 1 id: 21 unit: async function applyInspectionResult() file: main/src/image-management/image-management.ts start line: 408 end line: 468 size: 57 LOC McCabe index: 2 number of parameters: 1 id: 22 unit: def computePlateArtifacts() file: main/src/plate-preprocessing/plate-preprocessing.py start line: 0 end line: 0 size: 56 LOC McCabe index: 5 number of parameters: 5 id: 23 unit: async function validatePlate() file: main/src/image-management/image-management.ts start line: 581 end line: 641 size: 55 LOC McCabe index: 19 number of parameters: 1 id: 24 unit: constructor() file: main/cdk/batch-setup-stack.ts start line: 19 end line: 81 size: 54 LOC McCabe index: 1 number of parameters: 3 id: 25 unit: def handler() file: main/src/image-inspector/image-inspector.py start line: 0 end line: 0 size: 51 LOC McCabe index: 13 number of parameters: 2 id: 26 unit: constructor() file: main/cdk/configuration-stack.ts start line: 15 end line: 69 size: 49 LOC McCabe index: 3 number of parameters: 3 id: 27 unit: constructor() file: main/cdk/artifact-stack.ts start line: 17 end line: 66 size: 44 LOC McCabe index: 3 number of parameters: 3 id: 28 unit: def getFsxInfo() file: main/src/training-compute/training-compute.py start line: 0 end line: 0 size: 44 LOC McCabe index: 7 number of parameters: 0 id: 29 unit: async function processTrainPlate() file: main/src/search/search.ts start line: 231 end line: 283 size: 43 LOC McCabe index: 7 number of parameters: 2 id: 30 unit: async function listCompatiblePlates() file: main/src/image-management/image-management.ts start line: 643 end line: 690 size: 42 LOC McCabe index: 2 number of parameters: 4 id: 31 unit: constructor() file: main/cdk/label-stack.ts start line: 15 end line: 61 size: 41 LOC McCabe index: 3 number of parameters: 3 id: 32 unit: constructor() file: main/cdk/message-stack.ts start line: 22 end line: 67 size: 40 LOC McCabe index: 3 number of parameters: 3 id: 33 unit: constructor() file: main/cdk/tag-stack.ts start line: 22 end line: 67 size: 40 LOC McCabe index: 3 number of parameters: 3 id: 34 unit: async function updateLabel() file: main/src/label/label.ts start line: 164 end line: 207 size: 40 LOC McCabe index: 1 number of parameters: 3 id: 35 unit: async function createLabel() file: main/src/label/label.ts start line: 118 end line: 162 size: 38 LOC McCabe index: 4 number of parameters: 2 id: 36 unit: async function processEmbeddingPlate() file: main/src/search/search.ts start line: 301 end line: 344 size: 37 LOC McCabe index: 4 number of parameters: 2 id: 37 unit: async function addMessage() file: main/src/message/message.ts start line: 52 end line: 88 size: 37 LOC McCabe index: 2 number of parameters: 2 id: 38 unit: private void createSearchResults() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 477 end line: 516 size: 36 LOC McCabe index: 4 number of parameters: 3 id: 39 unit: async function getNextId() file: main/src/tag/tag.ts start line: 15 end line: 49 size: 35 LOC McCabe index: 2 number of parameters: 0 id: 40 unit: async function getImagesByPlateIdAndTrainId() file: main/src/image-management/image-management.ts start line: 308 end line: 342 size: 35 LOC McCabe index: 3 number of parameters: 2 id: 41 unit: async function getPlateImageStatus() file: main/src/image-management/image-management.ts start line: 476 end line: 515 size: 35 LOC McCabe index: 7 number of parameters: 1 id: 42 unit: private Map getTagLabelMap() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 518 end line: 551 size: 34 LOC McCabe index: 4 number of parameters: 0 id: 43 unit: def getResponseBodyAsJson() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 32 LOC McCabe index: 7 number of parameters: 1 id: 44 unit: function generateSearchMessageBody() file: main/src/search/search.ts start line: 186 end line: 217 size: 32 LOC McCabe index: 5 number of parameters: 1 id: 45 unit: def __init__() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 31 LOC McCabe index: 4 number of parameters: 4 id: 46 unit: async function getSearchResults() file: main/src/search/search.ts start line: 489 end line: 521 size: 31 LOC McCabe index: 4 number of parameters: 1 id: 47 unit: def client() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 30 LOC McCabe index: 14 number of parameters: 2 id: 48 unit: async function createTag() file: main/src/tag/tag.ts start line: 51 end line: 79 size: 29 LOC McCabe index: 2 number of parameters: 1 id: 49 unit: async function getImageIdsByPlateId() file: main/src/image-management/image-management.ts start line: 344 end line: 372 size: 29 LOC McCabe index: 3 number of parameters: 1 id: 50 unit: constructor() file: main/cdk/search-service-stack.ts start line: 25 end line: 57 size: 28 LOC McCabe index: 1 number of parameters: 3 id: 51 unit: async function waitForSearch() file: main/src/search/search.ts start line: 460 end line: 487 size: 28 LOC McCabe index: 5 number of parameters: 2 id: 52 unit: async function createDescribeStacksArtifact() file: main/src/artifact/artifact.ts start line: 91 end line: 122 size: 27 LOC McCabe index: 1 number of parameters: 2 id: 53 unit: async function createMessage() file: main/src/message/message.ts start line: 24 end line: 50 size: 27 LOC McCabe index: 1 number of parameters: 1 id: 54 unit: constructor() file: main/cdk/image-preprocessing-stack.ts start line: 14 end line: 41 size: 26 LOC McCabe index: 1 number of parameters: 3 id: 55 unit: async function deleteCategory() file: main/src/label/label.ts start line: 88 end line: 116 size: 26 LOC McCabe index: 5 number of parameters: 1 id: 56 unit: def forward() file: datasets/bbbc-021/scripts/bbbc021-1-train-script.py start line: 0 end line: 0 size: 25 LOC McCabe index: 1 number of parameters: 2 id: 57 unit: constructor() file: main/cdk/plate-preprocessing-stack.ts start line: 18 end line: 45 size: 25 LOC McCabe index: 1 number of parameters: 3 id: 58 unit: def startComputePlateEmbedding() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 24 LOC McCabe index: 4 number of parameters: 3 id: 59 unit: def startComputeEmbedding() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 60 unit: def startTrainingLoad() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 61 unit: def startTagLoad() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 24 LOC McCabe index: 4 number of parameters: 2 id: 62 unit: async function createPlateMessageId() file: main/src/image-management/image-management.ts start line: 99 end line: 124 size: 24 LOC McCabe index: 2 number of parameters: 1 id: 63 unit: def calcMip() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 24 LOC McCabe index: 5 number of parameters: 2 id: 64 unit: async function createSearchResults() file: main/src/search/search.ts start line: 385 end line: 408 size: 24 LOC McCabe index: 2 number of parameters: 2 id: 65 unit: def findCentersFromLabels() file: main/src/image-preprocessing/image-preprocessing.py start line: 0 end line: 0 size: 24 LOC McCabe index: 8 number of parameters: 1 id: 66 unit: async function updateSearchStatus() file: main/src/search/search.ts start line: 421 end line: 447 size: 23 LOC McCabe index: 1 number of parameters: 2 id: 67 unit: async function validateEmbeddingName() file: main/src/train/train.ts start line: 28 end line: 49 size: 22 LOC McCabe index: 4 number of parameters: 1 id: 68 unit: async function setParameter() file: main/src/configuration/configuration.ts start line: 24 end line: 45 size: 22 LOC McCabe index: 1 number of parameters: 2 id: 69 unit: function createPlateTagStringMessage() file: main/src/search/search.ts start line: 363 end line: 383 size: 21 LOC McCabe index: 3 number of parameters: 1 id: 70 unit: async function deleteEmbedding() file: main/src/training-configuration/training-configuration.ts start line: 172 end line: 192 size: 21 LOC McCabe index: 3 number of parameters: 1 id: 71 unit: createSfnMessage() file: main/cdk/process-plate-stack.ts start line: 37 end line: 56 size: 20 LOC McCabe index: 1 number of parameters: 2 id: 72 unit: async function createArtifact() file: main/src/artifact/artifact.ts start line: 21 end line: 40 size: 20 LOC McCabe index: 3 number of parameters: 1 id: 73 unit: async function updateImageTags() file: main/src/image-management/image-management.ts start line: 719 end line: 740 size: 20 LOC McCabe index: 1 number of parameters: 2 id: 74 unit: private void updateSearchStatus() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 226 end line: 245 size: 20 LOC McCabe index: 2 number of parameters: 2 id: 75 unit: async function updateTraining() file: main/src/training-configuration/training-configuration.ts start line: 96 end line: 117 size: 20 LOC McCabe index: 2 number of parameters: 3 id: 76 unit: def preprocessPlate() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 19 LOC McCabe index: 1 number of parameters: 6 id: 77 unit: constructor() file: main/cdk/image-artifact-stack.ts start line: 15 end line: 35 size: 19 LOC McCabe index: 1 number of parameters: 3 id: 78 unit: async function createMessage() file: main/src/image-management/image-management.ts start line: 144 end line: 163 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 79 unit: def normalizeChannel() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 19 LOC McCabe index: 6 number of parameters: 2 id: 80 unit: private void setPlateTags() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 575 end line: 593 size: 19 LOC McCabe index: 3 number of parameters: 1 id: 81 unit: def getHistory() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 18 LOC McCabe index: 3 number of parameters: 2 id: 82 unit: private void addPlateEmbedding() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 304 end line: 321 size: 18 LOC McCabe index: 2 number of parameters: 1 id: 83 unit: function validateEmbedding() file: main/src/training-configuration/training-configuration.ts start line: 144 end line: 161 size: 18 LOC McCabe index: 12 number of parameters: 1 id: 84 unit: async function updateCategoryDescription() file: main/src/label/label.ts start line: 26 end line: 43 size: 18 LOC McCabe index: 1 number of parameters: 2 id: 85 unit: async function getTagById() file: main/src/tag/tag.ts start line: 97 end line: 113 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 86 unit: async function getPlateMessageId() file: main/src/image-management/image-management.ts start line: 126 end line: 142 size: 17 LOC McCabe index: 3 number of parameters: 1 id: 87 unit: async function getEmbeddingNameForTrainId() file: main/src/training-configuration/training-configuration.ts start line: 78 end line: 94 size: 17 LOC McCabe index: 1 number of parameters: 1 id: 88 unit: async function deleteParameter() file: main/src/configuration/configuration.ts start line: 76 end line: 91 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 89 unit: async function addAnnotation() file: main/src/artifact/artifact.ts start line: 57 end line: 74 size: 16 LOC McCabe index: 1 number of parameters: 4 id: 90 unit: async function getWellMapByPlateId() file: main/src/image-management/image-management.ts start line: 374 end line: 389 size: 16 LOC McCabe index: 3 number of parameters: 1 id: 91 unit: function createPlateEmbeddingStringMessage() file: main/src/search/search.ts start line: 346 end line: 361 size: 16 LOC McCabe index: 2 number of parameters: 1 id: 92 unit: private void handleManagementMessage() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 247 end line: 262 size: 16 LOC McCabe index: 6 number of parameters: 1 id: 93 unit: function triggerHandler() file: datasets/bbbc-021/cdk/bbbc-021-stack.ts start line: 142 end line: 158 size: 15 LOC McCabe index: 4 number of parameters: 3 id: 94 unit: def __init__() file: datasets/bbbc-021/scripts/bbbc021-1-train-script.py start line: 0 end line: 0 size: 15 LOC McCabe index: 1 number of parameters: 1 id: 95 unit: def getAll() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 96 unit: def listCategories() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 97 unit: async function getTagByValue() file: main/src/tag/tag.ts start line: 81 end line: 95 size: 15 LOC McCabe index: 2 number of parameters: 1 id: 98 unit: def findHistCutoff() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 99 unit: async function uploadEmbeddings() file: main/src/search/search.ts start line: 285 end line: 299 size: 15 LOC McCabe index: 1 number of parameters: 3 id: 100 unit: def listLabels() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 14 LOC McCabe index: 2 number of parameters: 2 id: 101 unit: def generateDefaultArtifacts() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 14 LOC McCabe index: 1 number of parameters: 6 id: 102 unit: addBucketResourceReadOnly() file: main/cdk/resource-permissions-stack.ts start line: 47 end line: 62 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 103 unit: addBucketResourceFullPermissions() file: main/cdk/resource-permissions-stack.ts start line: 64 end line: 79 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 104 unit: async function startTraining() file: main/src/train/train.ts start line: 13 end line: 26 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 105 unit: async function getHistoryRows() file: main/src/configuration/configuration.ts start line: 47 end line: 60 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 106 unit: async function getArtifacts() file: main/src/artifact/artifact.ts start line: 42 end line: 55 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 107 unit: async function deleteArtifacts() file: main/src/artifact/artifact.ts start line: 76 end line: 89 size: 14 LOC McCabe index: 3 number of parameters: 2 id: 108 unit: def getCompatiblePlates() file: main/src/training-build/training-build.py start line: 0 end line: 0 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 109 unit: async function startUploadSourcePlate() file: main/src/process-plate/process-plate.ts start line: 12 end line: 25 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 110 unit: async function startProcessPlate() file: main/src/process-plate/process-plate.ts start line: 27 end line: 40 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 111 unit: async function populateSourcePlate() file: main/src/process-plate/process-plate.ts start line: 42 end line: 55 size: 14 LOC McCabe index: 1 number of parameters: 2 id: 112 unit: async function listMessage() file: main/src/message/message.ts start line: 90 end line: 103 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 113 unit: async function deleteMessage() file: main/src/message/message.ts start line: 105 end line: 118 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 114 unit: async function getEmbeddingTrainings() file: main/src/training-configuration/training-configuration.ts start line: 205 end line: 218 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 115 unit: async function getCategoryUniqueRows() file: main/src/label/label.ts start line: 59 end line: 72 size: 14 LOC McCabe index: 1 number of parameters: 1 id: 116 unit: def getParameter() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 117 unit: def getMessage() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 118 unit: def train() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 13 LOC McCabe index: 1 number of parameters: 6 id: 119 unit: def executeImageEmbeddingCompute() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 13 LOC McCabe index: 1 number of parameters: 5 id: 120 unit: constructor() file: main/cdk/lustre-stack.ts start line: 15 end line: 29 size: 13 LOC McCabe index: 1 number of parameters: 3 id: 121 unit: async function getAll() file: main/src/configuration/configuration.ts start line: 62 end line: 74 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 122 unit: async function getAllTags() file: main/src/tag/tag.ts start line: 115 end line: 127 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 123 unit: async function createImageTrainResult() file: main/src/image-management/image-management.ts start line: 692 end line: 707 size: 13 LOC McCabe index: 1 number of parameters: 4 id: 124 unit: await uploadEmbeddings() file: main/src/search/search.ts start line: 272 end line: 313 size: 13 LOC McCabe index: 4 number of parameters: 3 id: 125 unit: async function getCategoryRows() file: main/src/label/label.ts start line: 45 end line: 57 size: 13 LOC McCabe index: 1 number of parameters: 1 id: 126 unit: async function getAllCategories() file: main/src/label/label.ts start line: 74 end line: 86 size: 13 LOC McCabe index: 1 number of parameters: 0 id: 127 unit: async function getIndex() file: main/src/label/label.ts start line: 220 end line: 232 size: 13 LOC McCabe index: 1 number of parameters: 2 id: 128 unit: def getIndex() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 3 id: 129 unit: def createMessage() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 130 unit: def listMessage() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 131 unit: def createEmbedding() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 132 unit: def populateSourcePlate() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 3 id: 133 unit: def updateImageTags() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 3 id: 134 unit: def submitSearch() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 135 unit: def writeNumpyToS3() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 3 id: 136 unit: async function deleteTraining() file: main/src/search/search.ts start line: 70 end line: 84 size: 12 LOC McCabe index: 1 number of parameters: 1 id: 137 unit: private Map getImageMap() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 291 end line: 302 size: 12 LOC McCabe index: 2 number of parameters: 1 id: 138 unit: async function createCategory() file: main/src/label/label.ts start line: 13 end line: 24 size: 12 LOC McCabe index: 1 number of parameters: 2 id: 139 unit: def createLabel() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 140 unit: def createTraining() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 141 unit: def getEmbeddingInfo() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 142 unit: def getEmbeddingTrainings() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 143 unit: def createArtifact() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 144 unit: def getImageInfo() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 145 unit: def getImagesByPlateId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 146 unit: def getImagesByPlateIdAndTrainId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 147 unit: def getImageIdsByPlateId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 148 unit: def getWellsByPlateId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 149 unit: def getImagesByPlateAndWellId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 150 unit: def getPlateImageStatus() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 151 unit: def createPlateMessageId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 152 unit: def getPlateMessageId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 153 unit: def validatePlate() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 154 unit: def createImageTrainResult() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 5 id: 155 unit: def listCompatiblePlates() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 5 id: 156 unit: def getImageTags() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 157 unit: def processPlate() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 158 unit: def uploadSourcePlate() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 159 unit: def describeExecution() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 160 unit: def startTrainingBuild() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 161 unit: def startTrainingCompute() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 162 unit: def processPlate() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 163 unit: def searchByImageId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 164 unit: def updateSearchStatus() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 3 id: 165 unit: def getSearchResults() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 166 unit: def getSearchStatus() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 167 unit: def loadTagLabelMap() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 168 unit: def logTrainList() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 169 unit: def deleteTraining() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 170 unit: def createTag() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 171 unit: def getTagByValue() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 172 unit: def getTagById() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 2 id: 173 unit: def getAllTags() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 174 unit: async function createMessage() file: main/src/train/train.ts start line: 51 end line: 61 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 175 unit: async function logTrainList() file: main/src/search/search.ts start line: 86 end line: 99 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 176 unit: async function loadTagLabelMap() file: main/src/search/search.ts start line: 101 end line: 114 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 177 unit: public int compare() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 114 end line: 124 size: 11 LOC McCabe index: 3 number of parameters: 2 id: 178 unit: function validTrainAttribute() file: main/src/training-configuration/training-configuration.ts start line: 56 end line: 68 size: 11 LOC McCabe index: 6 number of parameters: 1 id: 179 unit: async function deleteTraining() file: main/src/training-configuration/training-configuration.ts start line: 119 end line: 129 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 180 unit: async function getTraining() file: main/src/training-configuration/training-configuration.ts start line: 131 end line: 141 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 181 unit: def computeCellCenters() file: main/src/image-preprocessing/image-preprocessing.py start line: 0 end line: 0 size: 11 LOC McCabe index: 2 number of parameters: 1 id: 182 unit: def model_fn() file: datasets/bbbc-021/scripts/bbbc021-1-train-script.py start line: 0 end line: 0 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 183 unit: def setParameter() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 184 unit: def getDefaultTrainId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 185 unit: def setDefaultTrainId() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 186 unit: def deleteParameter() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 187 unit: def createCategory() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 188 unit: def updateCategoryDescription() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 189 unit: def deleteCategory() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 190 unit: def updateLabel() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 191 unit: def deleteMessage() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 192 unit: def addMessage() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 193 unit: def updateTraining() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 4 id: 194 unit: def getTraining() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 195 unit: def deleteTraining() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 196 unit: def deleteEmbedding() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 197 unit: def getTrainingJobInfo() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 198 unit: def getArtifacts() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 199 unit: def deleteArtifacts() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 200 unit: def addAnnotation() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 5 id: 201 unit: def createDescribeStacksArtifact() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 3 id: 202 unit: def applyInspectionResult() file: main/src/image-inspector/image-inspector.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 203 unit: async function getParameter() file: main/src/configuration/configuration.ts start line: 13 end line: 22 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 204 unit: async function getImageInfo() file: main/src/image-management/image-management.ts start line: 88 end line: 97 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 205 unit: async function getTrainInfo() file: main/src/image-management/image-management.ts start line: 165 end line: 174 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 206 unit: async function getImageRow() file: main/src/image-management/image-management.ts start line: 293 end line: 302 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 207 unit: def normImageData() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 208 unit: function statusIsValid() file: main/src/search/search.ts start line: 410 end line: 419 size: 10 LOC McCabe index: 5 number of parameters: 1 id: 209 unit: async function getSearchOrigin() file: main/src/search/search.ts start line: 449 end line: 458 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 210 unit: async function getMessage() file: main/src/message/message.ts start line: 13 end line: 22 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 211 unit: function validateTraining() file: main/src/training-configuration/training-configuration.ts start line: 45 end line: 54 size: 10 LOC McCabe index: 4 number of parameters: 1 id: 212 unit: async function getEmbeddingInfo() file: main/src/training-configuration/training-configuration.ts start line: 194 end line: 203 size: 10 LOC McCabe index: 1 number of parameters: 1 id: 213 unit: async function listLabels() file: main/src/label/label.ts start line: 209 end line: 218 size: 10 LOC McCabe index: 3 number of parameters: 1 id: 214 unit: def _save_model() file: datasets/bbbc-021/scripts/bbbc021-1-train-script.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 215 unit: async function createTraining() file: main/src/train/train.ts start line: 63 end line: 71 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 216 unit: async function startTrainingBuild() file: main/src/train/train.ts start line: 73 end line: 81 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 217 unit: async function getImageTags() file: main/src/image-management/image-management.ts start line: 709 end line: 717 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 218 unit: def getColors() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 219 unit: def findCutoffAvg() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 220 unit: def getTmpDir() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 9 LOC McCabe index: 2 number of parameters: 0 id: 221 unit: MessageBody: createPlateEmbeddingStringMessage() file: main/src/search/search.ts start line: 293 end line: 302 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 222 unit: public double computeEuclideanDistance() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 73 end line: 81 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 223 unit: public double computeDistance() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 83 end line: 91 size: 9 LOC McCabe index: 3 number of parameters: 2 id: 224 unit: private void deleteMessages() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 135 end line: 143 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 225 unit: private void deleteTraining() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 272 end line: 280 size: 9 LOC McCabe index: 2 number of parameters: 1 id: 226 unit: def createArtifact() file: main/src/embedding-compute/embedding-compute.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 227 unit: def getCompoundMoaMapFromDf() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 228 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 8 LOC McCabe index: 6 number of parameters: 2 id: 229 unit: async function describeExecution() file: main/src/embedding-management/embedding-management.ts start line: 8 end line: 16 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 230 unit: async function getWellsByPlateId() file: main/src/image-management/image-management.ts start line: 391 end line: 398 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 231 unit: async function processPlate() file: main/src/search/search.ts start line: 222 end line: 229 size: 8 LOC McCabe index: 3 number of parameters: 1 id: 232 unit: private void updateStatusToError() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 217 end line: 224 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 233 unit: private void handleSearchMessage() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 282 end line: 289 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 234 unit: async function describeExecution() file: main/src/process-plate/process-plate.ts start line: 57 end line: 65 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 235 unit: async function createEmbedding() file: main/src/training-configuration/training-configuration.ts start line: 163 end line: 170 size: 8 LOC McCabe index: 1 number of parameters: 1 id: 236 unit: def writeNumpyToS3() file: main/src/embedding-compute/embedding-compute.py start line: 0 end line: 0 size: 8 LOC McCabe index: 1 number of parameters: 3 id: 237 unit: def applyEmbeddingResult() file: main/src/embedding-compute/embedding-compute.py start line: 0 end line: 0 size: 8 LOC McCabe index: 1 number of parameters: 4 id: 238 unit: def getStackOutputByPrefix() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 7 LOC McCabe index: 3 number of parameters: 3 id: 239 unit: constructor() file: main/cdk/base-stack.ts start line: 14 end line: 38 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 240 unit: def getS3TextObjectWriteToPath() file: main/src/training-compute/training-compute.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 241 unit: MessageBody: createPlateTagStringMessage() file: main/src/search/search.ts start line: 334 end line: 340 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 242 unit: public double dot() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 93 end line: 99 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 243 unit: private void logTrainList() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 264 end line: 270 size: 7 LOC McCabe index: 2 number of parameters: 0 id: 244 unit: async function createTraining() file: main/src/training-configuration/training-configuration.ts start line: 70 end line: 76 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 245 unit: def getCsvDfFromS3() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 246 unit: def getDataFrames() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 247 unit: def getStackByName() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 248 unit: def passZeroCheck() file: main/src/image-inspector/image-inspector.py start line: 0 end line: 0 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 249 unit: def s3ObjectExists() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 6 LOC McCabe index: 2 number of parameters: 2 id: 250 unit: public static App getApp() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 61 end line: 66 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 251 unit: public String toString() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 126 end line: 131 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 252 unit: async function getTrainingJobInfo() file: main/src/training-configuration/training-configuration.ts start line: 220 end line: 225 size: 6 LOC McCabe index: 1 number of parameters: 1 id: 253 unit: def getDimensions() file: main/src/image-inspector/image-inspector.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 254 unit: async function validateTrainId() file: main/src/image-management/image-management.ts start line: 176 end line: 180 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 255 unit: async function getImagesByPlateAndWellId() file: main/src/image-management/image-management.ts start line: 400 end line: 404 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 256 unit: def checkPixShape() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 5 LOC McCabe index: 3 number of parameters: 1 id: 257 unit: def computeNormedImage() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 258 unit: private App() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 55 end line: 59 size: 5 LOC McCabe index: 1 number of parameters: 0 id: 259 unit: def getMoaByDapi() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 260 unit: def cleanLabel() file: datasets/bbbc-021/scripts/apply-tags.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 261 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 262 unit: def applyImageCutoff() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 4 LOC McCabe index: 3 number of parameters: 2 id: 263 unit: def getImageFromS3AsNumpy() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 264 unit: def getNumpyArrayFromS3() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 265 unit: def loadJsonObjectFromS3() file: main/src/common/bioimageimage.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 266 unit: public static void main() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 68 end line: 71 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 267 unit: public ImageEmbedding() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 109 end line: 112 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 268 unit: def copyS3ObjectPathToLocalPath() file: main/src/embedding-compute/embedding-compute.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 269 unit: def labelFromCompound() file: datasets/bbbc-021/scripts/get-train-input-helper.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 270 unit: def __init__() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 271 unit: def getBatchTagFromPlateSourceId() file: datasets/bbbc-021/scripts/apply-tags.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 272 unit: def refresh() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 273 unit: def applyErrorResult() file: main/src/image-inspector/image-inspector.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 274 unit: async function getImagesByPlateId() file: main/src/image-management/image-management.ts start line: 304 end line: 306 size: 3 LOC McCabe index: 1 number of parameters: 1 id: 275 unit: def getTrainKey() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 276 unit: def getLabelKey() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 277 unit: def getNoLabelKey() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 278 unit: def getSubclassKey() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 279 unit: def getRoiKey() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 280 unit: def getFlatFieldKeyForChannel() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 281 unit: function getTimestamp() file: main/src/search/search.ts start line: 66 end line: 68 size: 3 LOC McCabe index: 1 number of parameters: 0 id: 282 unit: await uploadEmbeddings() file: main/src/search/search.ts start line: 277 end line: 279 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 283 unit: public double cosine() file: main/src/search-service/search/src/main/java/com/bioimage/search/App.java start line: 101 end line: 103 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 284 unit: def getNumpyArrayFromS3() file: main/src/embedding-compute/embedding-compute.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 285 unit: def getFileName() file: datasets/bbbc-021/scripts/generate_source_plate_info.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 286 unit: def getFilePrefix() file: datasets/bbbc-021/scripts/generate_source_plate_info.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 287 unit: def getDapiFileList() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 288 unit: def getTubulinFileByDapi() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 289 unit: def getActinFileByDapi() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 290 unit: def getWellByDapi() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 291 unit: def getCompoundByDapi() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 292 unit: def getConcentrationByDapi() file: datasets/bbbc-021/scripts/bbbc021common.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 293 unit: def getStacksDescription() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 294 unit: def getBaseStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 295 unit: def getConfigurationStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 296 unit: def getLabelStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 297 unit: def getMessageStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 298 unit: def getImageArtifactStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 299 unit: def getBatchSetupStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 300 unit: def getPlatePreprocessingStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 301 unit: def getTrainingConfigurationStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 302 unit: def getArtifactStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 303 unit: def getImageManagementStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 304 unit: def getProcessPlateStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 305 unit: def getTrainStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 306 unit: def getEmbeddingStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 307 unit: def getSearchStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 308 unit: def getTagStack() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 309 unit: def getTestBucketName() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 310 unit: def getConfigurationLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 311 unit: def getLabelLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 312 unit: def getMessageLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 313 unit: def getDefaultArtifactLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 314 unit: def getTrainingConfigurationLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 315 unit: def getArtifactLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 316 unit: def getImageManagementLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 317 unit: def getProcessPlateLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 318 unit: def getTrainLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 319 unit: def getTrainingBuildLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 320 unit: def getTrainingComputeLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 321 unit: def getEmbeddingLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 322 unit: def getEmbeddingComputeLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 323 unit: def getSearchLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 324 unit: def getTagLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 325 unit: def getBatchOnDemandQueueName() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 326 unit: def getBatchSpotQueueName() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 327 unit: def getPlatePreprocessingJobDefnArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 328 unit: def getBatchOnDemandQueueName() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 329 unit: def getBatchSpotQueueName() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 330 unit: def getStacksDescription() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 331 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 332 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 333 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 334 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 335 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 336 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 337 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 338 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 339 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 340 unit: def getBatchJobDefinitionArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 341 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 342 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 343 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 344 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 345 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 346 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 347 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 348 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 349 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 350 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 351 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 352 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 353 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 354 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 355 unit: def __init__() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 356 unit: def getLambdaArn() file: cli/bioims/src/bioims.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 357 unit: def getTrainPrefixKey() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 358 unit: def getTrainImageListArtifactPath() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 359 unit: def getRoiEmbeddingKey() file: main/src/common/bioimagepath.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 360 unit: def getFlatFieldKeyForChannel() file: main/src/image-preprocessing/image-preprocessing.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1