datasets/bbbc-021/scripts/generate_tags.py [7:25]:
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
s3c = boto3.client('s3')

sys.path.insert(0, "../../../cli/bioims/src")
import bioims

parser = argparse.ArgumentParser()

parser.add_argument('--bbbc021-bucket', type=str, required=True, help='bbbc021 bucket')
parser.add_argument('--bioims-resource-bucket', type=str, required=True, help='resource bucket')
parser.add_argument('--embeddingName', type=str, required=True, help='embedding name')

args = parser.parse_args()

BBBC021_BUCKET = args.bbbc021_bucket
BIOIMS_INPUT_BUCKET = args.bioims_resource_bucket
EMBEDDING = args.embeddingName

image_df, moa_df = bb.Bbbc021PlateInfoByDF.getDataFrames(BBBC021_BUCKET)
compound_moa_map = bb.Bbbc021PlateInfoByDF.getCompoundMoaMapFromDf(moa_df)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -



datasets/bbbc-021/scripts/get-train-input-helper.py [7:25]:
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
s3c = boto3.client('s3')

sys.path.insert(0, "../../../cli/bioims/src")
import bioims

parser = argparse.ArgumentParser()

parser.add_argument('--bbbc021-bucket', type=str, required=True, help='bbbc021 bucket')
parser.add_argument('--bioims-resource-bucket', type=str, required=True, help='resource bucket')
parser.add_argument('--embeddingName', type=str, required=True, help='embedding name')

args = parser.parse_args()

BBBC021_BUCKET = args.bbbc021_bucket
BIOIMS_INPUT_BUCKET = args.bioims_resource_bucket
EMBEDDING = args.embeddingName

image_df, moa_df = bb.Bbbc021PlateInfoByDF.getDataFrames(BBBC021_BUCKET)
compound_moa_map = bb.Bbbc021PlateInfoByDF.getCompoundMoaMapFromDf(moa_df)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -