in data/prepare_data.py [0:0]
def parse_args():
"""Prepare argument parser.
Args:
Return:
"""
parser = argparse.ArgumentParser(
description="Generate GVP ProteinGraph datasets representing protein"
+ "structures."
)
parser.add_argument(
"--data-file",
help="Path to protein data frame, including sequences, paths to"
+ " structure files and labels",
required=True,
)
parser.add_argument(
"-t",
"--target-variable",
help="target variable in the protein data frame",
required=True,
)
parser.add_argument("-o", "--output", help="output dir for graphs")
args = parser.parse_args()
return args