An overview of commit and contributor trends.
Timeline
Per Year
Latest commit date: 2022-01-28
| Commits |
27 |
203 |
| Contributors |
12 |
29 |
| 2022 | 2021 |
Per Month
Latest commit date: 2022-01-28
| Commits |
27 |
20 |
82 |
49 |
52 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| Contributors |
12 |
10 |
16 |
11 |
17 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 2022 01 |
2021 12 |
2021 11 |
2021 10 |
2021 09 |
2021 08 |
2021 07 |
2021 06 |
2021 05 |
2021 04 |
2021 03 |
2021 02 |
2021 01 |
2020 12 |
2020 11 |
2020 10 |
2020 09 |
2020 08 |
2020 07 |
2020 06 |
2020 05 |
2020 04 |
2020 03 |
2020 02 |
Per Week
Latest commit date: 2022-01-28
| Commits |
5 |
3 |
6 |
13 |
4 |
6 |
4 |
3 |
7 |
4 |
14 |
44 |
16 |
6 |
11 |
12 |
19 |
44 |
7 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| Contributors |
4 |
3 |
5 |
6 |
3 |
4 |
4 |
2 |
4 |
4 |
9 |
10 |
7 |
6 |
6 |
7 |
9 |
16 |
5 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 2022 01 24 |
2022 01 17 |
2022 01 10 |
2022 01 03 |
2021 12 27 |
2021 12 20 |
2021 12 13 |
2021 12 06 |
2021 11 29 |
2021 11 22 |
2021 11 15 |
2021 11 08 |
2021 11 01 |
2021 10 25 |
2021 10 18 |
2021 10 11 |
2021 10 04 |
2021 09 27 |
2021 09 20 |
2021 09 13 |
2021 09 06 |
2021 08 30 |
2021 08 23 |
2021 08 16 |
2021 08 09 |
2021 08 02 |
2021 07 26 |
2021 07 19 |
2021 07 12 |
2021 07 05 |
2021 06 28 |
2021 06 21 |
2021 06 14 |
2021 06 07 |
2021 05 31 |
2021 05 24 |
2021 05 17 |
2021 05 10 |
2021 05 03 |
2021 04 26 |
2021 04 19 |
2021 04 12 |
2021 04 05 |
2021 03 29 |
2021 03 22 |
2021 03 15 |
2021 03 08 |
2021 03 01 |
2021 02 22 |
2021 02 15 |
2021 02 08 |
2021 02 01 |
2021 01 25 |
2021 01 18 |
2021 01 11 |
2021 01 04 |
2020 12 28 |
2020 12 21 |
2020 12 14 |
2020 12 07 |
2020 11 30 |
2020 11 23 |
2020 11 16 |
2020 11 09 |
2020 11 02 |
2020 10 26 |
2020 10 19 |
2020 10 12 |
2020 10 05 |
2020 09 28 |
2020 09 21 |
2020 09 14 |
2020 09 07 |
2020 08 31 |
2020 08 24 |
2020 08 17 |
2020 08 10 |
2020 08 03 |
2020 07 27 |
2020 07 20 |
2020 07 13 |
2020 07 06 |
2020 06 29 |
2020 06 22 |
2020 06 15 |
2020 06 08 |
2020 06 01 |
2020 05 25 |
2020 05 18 |
2020 05 11 |
2020 05 04 |
2020 04 27 |
2020 04 20 |
2020 04 13 |
2020 04 06 |
2020 03 30 |
2020 03 23 |
2020 03 16 |
2020 03 09 |
2020 03 02 |
2020 02 24 |
2020 02 17 |
2020 02 10 |
2020 02 03 |
Per Day
Latest commit date: 2022-01-28
| Commits |
2 |
0 |
1 |
1 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
2 |
2 |
1 |
0 |
0 |
2 |
0 |
4 |
3 |
4 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
1 |
1 |
0 |
0 |
2 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
2 |
1 |
3 |
0 |
0 |
0 |
1 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
6 |
5 |
3 |
0 |
5 |
11 |
10 |
12 |
6 |
0 |
0 |
0 |
7 |
0 |
2 |
2 |
5 |
0 |
0 |
1 |
2 |
3 |
0 |
0 |
0 |
0 |
2 |
1 |
4 |
1 |
3 |
0 |
0 |
3 |
1 |
7 |
0 |
1 |
0 |
0 |
4 |
6 |
2 |
5 |
2 |
0 |
0 |
1 |
5 |
10 |
10 |
18 |
1 |
2 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| Contributors |
2 |
0 |
1 |
1 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
2 |
2 |
1 |
0 |
0 |
2 |
0 |
4 |
2 |
2 |
0 |
0 |
0 |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
1 |
1 |
0 |
0 |
2 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
2 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
5 |
4 |
3 |
0 |
2 |
4 |
5 |
3 |
3 |
0 |
0 |
0 |
3 |
0 |
2 |
2 |
3 |
0 |
0 |
1 |
2 |
3 |
0 |
0 |
0 |
0 |
2 |
1 |
4 |
1 |
1 |
0 |
0 |
3 |
1 |
5 |
0 |
1 |
0 |
0 |
3 |
4 |
2 |
4 |
2 |
0 |
0 |
1 |
4 |
5 |
7 |
6 |
1 |
2 |
0 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 2022 01 28 |
2022 01 27 |
2022 01 26 |
2022 01 25 |
2022 01 24 |
2022 01 23 |
2022 01 22 |
2022 01 21 |
2022 01 20 |
2022 01 19 |
2022 01 18 |
2022 01 17 |
2022 01 16 |
2022 01 15 |
2022 01 14 |
2022 01 13 |
2022 01 12 |
2022 01 11 |
2022 01 10 |
2022 01 09 |
2022 01 08 |
2022 01 07 |
2022 01 06 |
2022 01 05 |
2022 01 04 |
2022 01 03 |
2022 01 02 |
2022 01 01 |
2021 12 31 |
2021 12 30 |
2021 12 29 |
2021 12 28 |
2021 12 27 |
2021 12 26 |
2021 12 25 |
2021 12 24 |
2021 12 23 |
2021 12 22 |
2021 12 21 |
2021 12 20 |
2021 12 19 |
2021 12 18 |
2021 12 17 |
2021 12 16 |
2021 12 15 |
2021 12 14 |
2021 12 13 |
2021 12 12 |
2021 12 11 |
2021 12 10 |
2021 12 09 |
2021 12 08 |
2021 12 07 |
2021 12 06 |
2021 12 05 |
2021 12 04 |
2021 12 03 |
2021 12 02 |
2021 12 01 |
2021 11 30 |
2021 11 29 |
2021 11 28 |
2021 11 27 |
2021 11 26 |
2021 11 25 |
2021 11 24 |
2021 11 23 |
2021 11 22 |
2021 11 21 |
2021 11 20 |
2021 11 19 |
2021 11 18 |
2021 11 17 |
2021 11 16 |
2021 11 15 |
2021 11 14 |
2021 11 13 |
2021 11 12 |
2021 11 11 |
2021 11 10 |
2021 11 09 |
2021 11 08 |
2021 11 07 |
2021 11 06 |
2021 11 05 |
2021 11 04 |
2021 11 03 |
2021 11 02 |
2021 11 01 |
2021 10 31 |
2021 10 30 |
2021 10 29 |
2021 10 28 |
2021 10 27 |
2021 10 26 |
2021 10 25 |
2021 10 24 |
2021 10 23 |
2021 10 22 |
2021 10 21 |
2021 10 20 |
2021 10 19 |
2021 10 18 |
2021 10 17 |
2021 10 16 |
2021 10 15 |
2021 10 14 |
2021 10 13 |
2021 10 12 |
2021 10 11 |
2021 10 10 |
2021 10 09 |
2021 10 08 |
2021 10 07 |
2021 10 06 |
2021 10 05 |
2021 10 04 |
2021 10 03 |
2021 10 02 |
2021 10 01 |
2021 09 30 |
2021 09 29 |
2021 09 28 |
2021 09 27 |
2021 09 26 |
2021 09 25 |
2021 09 24 |
2021 09 23 |
2021 09 22 |
2021 09 21 |
2021 09 20 |
2021 09 19 |
2021 09 18 |
2021 09 17 |
2021 09 16 |
2021 09 15 |
2021 09 14 |
2021 09 13 |
2021 09 12 |
2021 09 11 |
2021 09 10 |
2021 09 09 |
2021 09 08 |
2021 09 07 |
2021 09 06 |
2021 09 05 |
2021 09 04 |
2021 09 03 |
2021 09 02 |
2021 09 01 |
2021 08 31 |
2021 08 30 |
2021 08 29 |
2021 08 28 |
2021 08 27 |
2021 08 26 |
2021 08 25 |
2021 08 24 |
2021 08 23 |
2021 08 22 |
2021 08 21 |
2021 08 20 |
2021 08 19 |
2021 08 18 |
2021 08 17 |
2021 08 16 |
2021 08 15 |
2021 08 14 |
2021 08 13 |
2021 08 12 |
2021 08 11 |
2021 08 10 |
2021 08 09 |
2021 08 08 |
2021 08 07 |
2021 08 06 |
2021 08 05 |
2021 08 04 |
2021 08 03 |
2021 08 02 |
2021 08 01 |
2021 07 31 |
2021 07 30 |
2021 07 29 |
2021 07 28 |
2021 07 27 |
2021 07 26 |
2021 07 25 |
2021 07 24 |
2021 07 23 |
2021 07 22 |
2021 07 21 |
2021 07 20 |
2021 07 19 |
2021 07 18 |
2021 07 17 |
2021 07 16 |
2021 07 15 |
2021 07 14 |
2021 07 13 |
2021 07 12 |
2021 07 11 |
2021 07 10 |
2021 07 09 |
2021 07 08 |
2021 07 07 |
2021 07 06 |
2021 07 05 |
2021 07 04 |
2021 07 03 |
2021 07 02 |
2021 07 01 |
2021 06 30 |
2021 06 29 |
2021 06 28 |
2021 06 27 |
2021 06 26 |
2021 06 25 |
2021 06 24 |
2021 06 23 |
2021 06 22 |
2021 06 21 |
2021 06 20 |
2021 06 19 |
2021 06 18 |
2021 06 17 |
2021 06 16 |
2021 06 15 |
2021 06 14 |
2021 06 13 |
2021 06 12 |
2021 06 11 |
2021 06 10 |
2021 06 09 |
2021 06 08 |
2021 06 07 |
2021 06 06 |
2021 06 05 |
2021 06 04 |
2021 06 03 |
2021 06 02 |
2021 06 01 |
2021 05 31 |
2021 05 30 |
2021 05 29 |
2021 05 28 |
2021 05 27 |
2021 05 26 |
2021 05 25 |
2021 05 24 |
2021 05 23 |
2021 05 22 |
2021 05 21 |
2021 05 20 |
2021 05 19 |
2021 05 18 |
2021 05 17 |
2021 05 16 |
2021 05 15 |
2021 05 14 |
2021 05 13 |
2021 05 12 |
2021 05 11 |
2021 05 10 |
2021 05 09 |
2021 05 08 |
2021 05 07 |
2021 05 06 |
2021 05 05 |
2021 05 04 |
2021 05 03 |
2021 05 02 |
2021 05 01 |
2021 04 30 |
2021 04 29 |
2021 04 28 |
2021 04 27 |
2021 04 26 |
2021 04 25 |
2021 04 24 |
2021 04 23 |
2021 04 22 |
2021 04 21 |
2021 04 20 |
2021 04 19 |
2021 04 18 |
2021 04 17 |
2021 04 16 |
2021 04 15 |
2021 04 14 |
2021 04 13 |
2021 04 12 |
2021 04 11 |
2021 04 10 |
2021 04 09 |
2021 04 08 |
2021 04 07 |
2021 04 06 |
2021 04 05 |
2021 04 04 |
2021 04 03 |
2021 04 02 |
2021 04 01 |
2021 03 31 |
2021 03 30 |
2021 03 29 |
2021 03 28 |
2021 03 27 |
2021 03 26 |
2021 03 25 |
2021 03 24 |
2021 03 23 |
2021 03 22 |
2021 03 21 |
2021 03 20 |
2021 03 19 |
2021 03 18 |
2021 03 17 |
2021 03 16 |
2021 03 15 |
2021 03 14 |
2021 03 13 |
2021 03 12 |
2021 03 11 |
2021 03 10 |
2021 03 09 |
2021 03 08 |
2021 03 07 |
2021 03 06 |
2021 03 05 |
2021 03 04 |
2021 03 03 |
2021 03 02 |
2021 03 01 |
2021 02 28 |
2021 02 27 |
2021 02 26 |
2021 02 25 |
2021 02 24 |
2021 02 23 |
2021 02 22 |
2021 02 21 |
2021 02 20 |
2021 02 19 |
2021 02 18 |
2021 02 17 |
2021 02 16 |
2021 02 15 |
2021 02 14 |
2021 02 13 |
2021 02 12 |
2021 02 11 |
2021 02 10 |
2021 02 09 |
2021 02 08 |
2021 02 07 |
2021 02 06 |
2021 02 05 |
2021 02 04 |
2021 02 03 |
2021 02 02 |
2021 02 01 |
2021 01 31 |
2021 01 30 |
2021 01 29 |
Contributors
Recent Contributors (34 = 0 veterans + 34 rookies)
Contributed in past 6 months (a rookie = the first contribution in past year)
Past 30 days (12):
Past 31 to 90 days (12):
Past 91 to 180 days (10):
Historical Contributors (0)
Last contributed more than 6 months ago
Contributors Matrix (Per Month)
| Commits (3m) |
Commit Days |
12
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10
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16
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11
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17
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| dtzeng@users.noreply.github.com | 2 | 2 |
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| 2242982+ghawk1ns@users.noreply.github.com | 3 | 11 |
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| 7497012+a-li@users.noreply.github.com | 13 | 17 |
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| tneely@users.noreply.github.com | 14 | 17 |
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| IllyaYalovyy@users.noreply.github.com | 7 | 14 |
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| Commits |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Contributors |
|
34 contributors (230 commits):
| # | Contributor |
First Commit |
Latest Commit |
Commits Count |
File Updates (per extension) |
|---|---|---|---|---|---|
| 1. | tneely@users.noreply.github.com | 2021-09-27 | 2022-01-10 | 24 (10%) | go (182), ts (52), sh (11), md (5), (4) |
| 2. | mrschre@amazon.com | 2021-09-28 | 2021-12-13 | 24 (10%) | go (34), json (29), md (24), wdl (11), ts (7) |
| 3. | elliotsm@amazon.com | 2021-09-28 | 2022-01-25 | 22 (9%) | go (146), md (11), ts (5), json (3) |
| 4. | atahlil@amazon.com | 2021-11-09 | 2021-11-12 | 21 (9%) | go (89), py (40), json (25), ts (13), wdl (10) |
| 5. | 7497012+a-li@users.noreply.github.com | 2021-09-29 | 2022-01-26 | 19 (8%) | go (27), md (13), ts (6), py (6), json (5) |
| 6. | IllyaYalovyy@users.noreply.github.com | 2021-09-25 | 2022-01-05 | 16 (6%) | go (55), md (25), json (4), sh (2), yaml (2) |
| 7. | wleepang@gmail.com | 2021-09-27 | 2021-11-10 | 14 (6%) | md (9), json (2), ts (2), yaml (2), toml (1) |
| 8. | 2242982+ghawk1ns@users.noreply.github.com | 2021-09-07 | 2022-01-28 | 13 (5%) | go (280), json (50), md (43), ts (40), png (16) |
| 9. | braidn@amazon.com | 2021-11-01 | 2021-12-17 | 13 (5%) | go (60), ts (43), py (10), md (6), json (4) |
| 10. | 30308260+abassyiouni@users.noreply.github.com | 2021-09-30 | 2022-01-05 | 9 (3%) | ts (35), go (22), yaml (2), sh (1), sum (1) |
| 11. | markjschreiber@gmail.com | 2021-09-22 | 2021-09-27 | 6 (2%) | yml (3), md (1), (1), toml (1) |
| 12. | waliag87@gmail.com | 2022-01-04 | 2022-01-12 | 5 (2%) | (6), yml (4), sh (3), md (1), json (1) |
| 13. | gwalia@amazon.com | 2021-12-30 | 2022-01-07 | 5 (2%) | (7), yml (5), sh (3), md (1), MD (1) |
| 14. | dovydenk@amazon.com | 2021-09-28 | 2021-11-24 | 5 (2%) | py (40), ts (20), json (6), sh (3), yaml (2) |
| 15. | 93626953+anisatahlil@users.noreply.github.com | 2021-11-15 | 2021-12-07 | 3 (1%) | go (22) |
| 16. | andrewjdresser@gmail.com | 2021-10-06 | 2021-10-13 | 3 (1%) | md (2), json (1) |
| 17. | 49699333+dependabot[bot]@users.noreply.github.com | 2021-09-29 | 2021-09-29 | 3 (1%) | json (3) |
| 18. | dtzeng@users.noreply.github.com | 2022-01-21 | 2022-01-28 | 2 (<1%) | go (7), md (1), sum (1), mod (1) |
| 19. | dovydenko.andrej@gmail.com | 2021-12-10 | 2021-12-11 | 2 (<1%) | (11), md (3), yml (3), sh (2), sum (1) |
| 20. | dzl@88665a545034.ant.amazon.com | 2021-11-15 | 2021-11-17 | 2 (<1%) | md (2), json (1) |
| 21. | seaam@amazon.com | 2021-10-13 | 2021-10-13 | 2 (<1%) | md (2) |
| 22. | mr.fermion@gmail.com | 2021-09-30 | 2021-09-30 | 2 (<1%) | (2), yml (1) |
| 23. | midaisuk@gmail.com | 2021-09-27 | 2021-09-27 | 2 (<1%) | md (2) |
| 24. | yalovyyi@amazon.com | 2021-09-25 | 2021-09-27 | 2 (<1%) | md (25), json (3), sh (2), html (2), go (1) |
| 25. | guyhawki@amazon.com | 2021-09-01 | 2021-09-23 | 2 (<1%) | go (250), json (44), md (37), ts (28), png (16) |
| 26. | dtzeng@amazon.com | 2022-01-20 | 2022-01-20 | 1 (<1%) | go (7), md (1) |
| 27. | chuanyut@amazon.com | 2022-01-13 | 2022-01-13 | 1 (<1%) | go (2), json (1), ts (1) |
| 28. | evanyui@hotmail.com | 2022-01-11 | 2022-01-11 | 1 (<1%) | go (2), json (1), ts (1) |
| 29. | anovak@soe.ucsc.edu | 2021-12-21 | 2021-12-21 | 1 (<1%) | md (1) |
| 30. | tayneely@amazon.com | 2021-11-17 | 2021-11-17 | 1 (<1%) | go (51), ts (9), md (2), json (1), yml (1) |
| 31. | awlucattini@icloud.com | 2021-11-16 | 2021-11-16 | 1 (<1%) | md (1) |
| 32. | 93286759+aws-genomics-automation@users.noreply.github.com | 2021-11-11 | 2021-11-11 | 1 (<1%) | go (90), py (40), ts (31), json (29), md (23) |
| 33. | aaron.j.friedman@gmail.com | 2021-09-28 | 2021-09-28 | 1 (<1%) | md (1) |
| 34. | badger@gitter.im | 2021-09-27 | 2021-09-27 | 1 (<1%) | md (1) |
Contributor Dependencies
A contributor dependency is detected if two contributors have changed the same files in the past 35600 days.
C-median: 15.0
A half of the contributors has more than 15.0 connections, and a half has less than this number.
C-mean: 16.1
An average number of connections a contributor has with other contributors.
C-index: 16.0
There are 16.0 contributors with 16.0 or more connections.
Most Connected Contributors
| Contributor | # connections | # commits | |
|---|---|---|---|
| 1. | 2242982+ghawk1ns@users.noreply.github.com | 30 | 13 |
| 2. | guyhawki@amazon.com | 30 | 2 |
| 3. | 93286759+aws-genomics-automation@users.noreply.github.com | 29 | 1 |
| 4. | IllyaYalovyy@users.noreply.github.com | 28 | 16 |
| 5. | tneely@users.noreply.github.com | 26 | 24 |
| 6. | mrschre@amazon.com | 26 | 24 |
| 7. | braidn@amazon.com | 25 | 13 |
| 8. | atahlil@amazon.com | 24 | 21 |
| 9. | elliotsm@amazon.com | 23 | 22 |
| 10. | 7497012+a-li@users.noreply.github.com | 23 | 19 |
| 11. | wleepang@gmail.com | 22 | 14 |
| 12. | yalovyyi@amazon.com | 22 | 2 |
| 13. | tayneely@amazon.com | 21 | 1 |
| 14. | dtzeng@users.noreply.github.com | 19 | 2 |
| 15. | dtzeng@amazon.com | 18 | 1 |
| 16. | midaisuk@gmail.com | 17 | 2 |
| 17. | 30308260+abassyiouni@users.noreply.github.com | 16 | 9 |
| 18. | 93626953+anisatahlil@users.noreply.github.com | 14 | 3 |
| 19. | seaam@amazon.com | 14 | 2 |
| 20. | andrewjdresser@gmail.com | 13 | 3 |
| 21. | dovydenk@amazon.com | 12 | 5 |
| 22. | markjschreiber@gmail.com | 11 | 6 |
| 23. | anovak@soe.ucsc.edu | 10 | 1 |
| 24. | awlucattini@icloud.com | 10 | 1 |
| 25. | badger@gitter.im | 10 | 1 |
| 26. | aaron.j.friedman@gmail.com | 9 | 1 |
| 27. | dovydenko.andrej@gmail.com | 8 | 2 |
| 28. | chuanyut@amazon.com | 7 | 1 |
| 29. | evanyui@hotmail.com | 7 | 1 |
| 30. | waliag87@gmail.com | 6 | 5 |
| 31. | 49699333+dependabot[bot]@users.noreply.github.com | 6 | 3 |
| 32. | dzl@88665a545034.ant.amazon.com | 6 | 2 |
| 33. | mr.fermion@gmail.com | 5 | 2 |
| 34. | gwalia@amazon.com | 3 | 5 |
Contributor Dependencies via Shared Files
show graph...
The number on lines shows the number of same files that both persons changed in past 35600 days.
- open 3D force graph
Contributor 1
Contributor 2
# shared files
1.
2242982+ghawk1ns@users.noreply.github.com
guyhawki@amazon.com
455 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/content/en/docs/Concepts/accounts.md
packages/cli/internal/pkg/cli/workflow/workflow_details.go
packages/common/aws/s3/interface.go
site/config.toml
packages/common/aws/sts/get_account.go
packages/wes_api/client/model_error_response.go
examples/gatk-best-practices-project/workflow-diagrams/cram-to-bam.dot.png
examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/options.json
packages/common/aws/cfn/get_stack_status.go
packages/common/aws/cfn/get_stack_exports.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/wes/interface.go
packages/cli/TESTING.md
packages/common/aws/ecr/ecr_client_test.go
packages/cli/internal/pkg/constants/product.go
packages/common/aws/ddb/write_workflow_instance.go
packages/cli/internal/pkg/wes/option/workflow_attachment.go
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site/content/en/docs/Concepts/workflows.md
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packages/cli/internal/pkg/cli/workflow_output.go
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THIRD-PARTY
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site/content/en/docs/Workflow engines/miniwdl.md
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packages/cdk/lib/roles/nextflow-engine-role.ts
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site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
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packages/cli/internal/pkg/cli/describe_output_test.go
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examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
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examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
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site/content/en/docs/Concepts/contexts.md
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examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
site/content/en/docs/Concepts/projects.md
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site/content/en/docs/Getting started/installation.md
examples/nf-core-project/workflows/rnaseq/inputs.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
packages/cli/internal/pkg/cli/context/manager.go
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examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
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site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
packages/cdk/lib/constants.ts
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
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packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
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packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
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packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
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packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
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packages/cli/internal/pkg/cli/context_destroy.go
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packages/cli/internal/pkg/storage/project_client.go
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packages/cdk/lib/constructs/batch.ts
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packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
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packages/cli/internal/pkg/aws/ddb/get_workflow_instance_by_id.go
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packages/cli/internal/pkg/aws/cdk/execute_cdk.go
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packages/cli/internal/pkg/storage/interfaces.go
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packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
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packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_context.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cfn/list_stacks.go
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
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packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/aws/ddb/list_workflows.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/batch/get_jobs.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/aws/sts/get_account.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/aws/ecr/image_listable.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/aws/cfn/get_stack_exports.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_name.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/s3/sync_file.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cfn/delete_stack.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/aws/cwl/get_logs.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/aws/ecr/image_reference.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
packages/cli/internal/pkg/aws/ddb/write_workflow_instance.go
packages/cli/internal/pkg/aws/cdk/new_client.go
10.
elliotsm@amazon.com
2242982+ghawk1ns@users.noreply.github.com
71 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/cli.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/clierror/cli_error.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
packages/cli/internal/pkg/aws/cdk/new_client.go
11.
elliotsm@amazon.com
guyhawki@amazon.com
68 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/cli.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/clierror/cli_error.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
12.
braidn@amazon.com
tayneely@amazon.com
64 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
13.
atahlil@amazon.com
dovydenk@amazon.com
64 shared files
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/package.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/.eslintrc.js
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
14.
93286759+aws-genomics-automation@users.noreply.github.com
dovydenk@amazon.com
64 shared files
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
15.
tneely@users.noreply.github.com
braidn@amazon.com
62 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
16.
2242982+ghawk1ns@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
58 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/storage/project_client_test.go
site/content/en/community/_index.md
packages/cli/Makefile
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
packages/cli/internal/pkg/logging/prefix.go
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
packages/cli/internal/pkg/cli/format/text_test.go
site/README.md
site/content/en/about/_index.html
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
packages/cli/internal/pkg/cli/logs_core_test.go
site/content/en/docs/Concepts/_index.md
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
site/content/en/docs/Best practices/scalingworkloads.md
17.
braidn@amazon.com
2242982+ghawk1ns@users.noreply.github.com
58 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/Makefile
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
scripts/cli/install.sh
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cdk/lib/stacks/nested/nested-engine-stack.ts
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
18.
braidn@amazon.com
guyhawki@amazon.com
55 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/Makefile
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
scripts/cli/install.sh
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cdk/lib/stacks/nested/nested-engine-stack.ts
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
19.
93286759+aws-genomics-automation@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
54 shared files
site/content/en/docs/Concepts/accounts.md
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/version/cache.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/version/replenish_func.go
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/version/cache_test.go
packages/cli/internal/pkg/version/interfaces.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/version/store_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/version/version_check_result.go
packages/cli/internal/pkg/version/store.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
examples/demo-wdl-project/workflows/words/MANIFEST.json
scripts/run-dev.sh
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/version/checker.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/version/replenish_func_test.go
site/README.md
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/version/check_func.go
packages/cli/internal/pkg/version/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/version/info.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/version/checker_test.go
packages/cli/internal/pkg/version/check_func_test.go
examples/demo-wdl-project/workflows/read/main.wdl
20.
IllyaYalovyy@users.noreply.github.com
guyhawki@amazon.com
54 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/storage/project_client_test.go
site/content/en/community/_index.md
packages/cli/Makefile
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
packages/cli/internal/pkg/cli/format/text_test.go
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
packages/cli/internal/pkg/cli/logs_core_test.go
site/content/en/docs/Concepts/_index.md
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
site/content/en/docs/Best practices/scalingworkloads.md
21.
93286759+aws-genomics-automation@users.noreply.github.com
elliotsm@amazon.com
50 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
.github/ISSUE_TEMPLATE/feature_request.md
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
.github/ISSUE_TEMPLATE/bug_report.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/PULL_REQUEST_TEMPLATE.md
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cwl/get_logs.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
22.
braidn@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
48 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
23.
atahlil@amazon.com
mrschre@amazon.com
47 shared files
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
site/content/en/docs/Workflow engines/miniwdl.md
examples/demo-wdl-project/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
site/package-lock.json
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
site/themes/docsy
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
examples/gatk-best-practices-project-miniwdl/README.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
site/content/en/docs/Concepts/contexts.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json
packages/cdk/package-lock.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
site/content/en/docs/Getting started/installation.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
24.
elliotsm@amazon.com
braidn@amazon.com
46 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/aws/cdk/new_client.go
25.
mrschre@amazon.com
2242982+ghawk1ns@users.noreply.github.com
45 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context/info.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_schema.json
site/themes/docsy
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
site/content/en/docs/Concepts/contexts.md
packages/cdk/package-lock.json
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
26.
tneely@users.noreply.github.com
tayneely@amazon.com
44 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
27.
tayneely@amazon.com
2242982+ghawk1ns@users.noreply.github.com
43 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
28.
mrschre@amazon.com
guyhawki@amazon.com
42 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context/info.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
site/content/en/docs/Concepts/contexts.md
packages/cdk/package-lock.json
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
29.
atahlil@amazon.com
2242982+ghawk1ns@users.noreply.github.com
41 shared files
packages/cli/Makefile
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
site/package-lock.json
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
site/themes/docsy
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cdk/.eslintrc.js
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/configure_describe.go
30.
braidn@amazon.com
atahlil@amazon.com
41 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cli/internal/pkg/storage/interfaces.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
31.
tayneely@amazon.com
guyhawki@amazon.com
40 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
32.
atahlil@amazon.com
guyhawki@amazon.com
40 shared files
packages/cli/Makefile
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
site/package-lock.json
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cdk/.eslintrc.js
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/configure_describe.go
33.
7497012+a-li@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
39 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
.versionrc
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
.github/semantic.yml
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
.github/workflows/stale_issue.yml
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
bump.sh
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/config/config_client.go
.github/PULL_REQUEST_TEMPLATE.md
scripts/package-release.sh
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
34.
elliotsm@amazon.com
tayneely@amazon.com
38 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/aws/cdk/new_client.go
35.
93286759+aws-genomics-automation@users.noreply.github.com
30308260+abassyiouni@users.noreply.github.com
37 shared files
packages/cli/internal/pkg/cli/format/table.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/workflow_auto_complete.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/cli/logs_core.go
scripts/context-deploy-benchmark/context-benchmark.sh
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/cli/workflow/interface.go
packages/cli/internal/pkg/cli/workflow_auto_complete_test.go
packages/cli/internal/pkg/cli/workflow_run.go
scripts/context-deploy-benchmark/cromwell/agc-project.yaml
packages/cli/internal/pkg/cli/context_destroy.go
scripts/context-deploy-benchmark/nextflow/agc-project.yaml
packages/cli/internal/pkg/cli/context_auto_complete_test.go
packages/cli/internal/pkg/cli/context_auto_complete.go
packages/cli/internal/pkg/mocks/workflow/mock_interfaces.go
packages/cli/internal/pkg/cli/format/table_test.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cli/internal/pkg/mocks/workflow/interfaces.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
36.
IllyaYalovyy@users.noreply.github.com
yalovyyi@amazon.com
35 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
examples/demo-wdl-project/workflows/haplotype/MANIFEST.json
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
examples/demo-nextflow-project/workflows/rnaseq/inputs.json
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
site/content/en/docs/Best practices/scalingworkloads.md
37.
2242982+ghawk1ns@users.noreply.github.com
yalovyyi@amazon.com
33 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
packages/common/Makefile
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
site/content/en/docs/Best practices/scalingworkloads.md
38.
yalovyyi@amazon.com
guyhawki@amazon.com
33 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
packages/common/Makefile
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
site/content/en/docs/Best practices/scalingworkloads.md
39.
IllyaYalovyy@users.noreply.github.com
tneely@users.noreply.github.com
33 shared files
packages/cli/internal/pkg/aws/ddb/client.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
scripts/run-dev.sh
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
40.
braidn@amazon.com
7497012+a-li@users.noreply.github.com
33 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/osutils/utils_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
41.
atahlil@amazon.com
tneely@users.noreply.github.com
32 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/cli/configure_email.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
42.
tayneely@amazon.com
atahlil@amazon.com
27 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
43.
30308260+abassyiouni@users.noreply.github.com
tneely@users.noreply.github.com
26 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
44.
tneely@users.noreply.github.com
7497012+a-li@users.noreply.github.com
26 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/logs_workflow_test.go
.versionrc
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
bump.sh
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
scripts/package-release.sh
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
45.
tneely@users.noreply.github.com
mrschre@amazon.com
25 shared files
examples/nf-core-project/agc-project.yaml
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
46.
7497012+a-li@users.noreply.github.com
atahlil@amazon.com
25 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
47.
tayneely@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
24 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
48.
elliotsm@amazon.com
IllyaYalovyy@users.noreply.github.com
24 shared files
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
49.
7497012+a-li@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
24 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/wes_api/client/model_log.go
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
50.
7497012+a-li@users.noreply.github.com
guyhawki@amazon.com
24 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/wes_api/client/model_log.go
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
51.
atahlil@amazon.com
elliotsm@amazon.com
22 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
52.
braidn@amazon.com
30308260+abassyiouni@users.noreply.github.com
20 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
53.
7497012+a-li@users.noreply.github.com
elliotsm@amazon.com
19 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
.github/PULL_REQUEST_TEMPLATE.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
54.
30308260+abassyiouni@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
18 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
55.
braidn@amazon.com
IllyaYalovyy@users.noreply.github.com
18 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
scripts/cli/install.sh
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
56.
braidn@amazon.com
dovydenk@amazon.com
18 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
57.
mrschre@amazon.com
IllyaYalovyy@users.noreply.github.com
17 shared files
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
packages/cli/go.mod
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
58.
30308260+abassyiouni@users.noreply.github.com
guyhawki@amazon.com
17 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
59.
braidn@amazon.com
mrschre@amazon.com
17 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
60.
tayneely@amazon.com
30308260+abassyiouni@users.noreply.github.com
16 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
61.
93626953+anisatahlil@users.noreply.github.com
braidn@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
62.
93626953+anisatahlil@users.noreply.github.com
tayneely@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
63.
93626953+anisatahlil@users.noreply.github.com
atahlil@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
64.
tayneely@amazon.com
7497012+a-li@users.noreply.github.com
16 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
65.
93286759+aws-genomics-automation@users.noreply.github.com
yalovyyi@amazon.com
15 shared files
site/content/en/docs/Concepts/accounts.md
site/content/en/docs/Concepts/workflows.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
scripts/run-dev.sh
site/content/en/_index.html
site/content/en/docs/Concepts/contexts.md
site/README.md
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
66.
tneely@users.noreply.github.com
dovydenk@amazon.com
15 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/context-stack.ts
67.
elliotsm@amazon.com
mrschre@amazon.com
15 shared files
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
68.
tayneely@amazon.com
IllyaYalovyy@users.noreply.github.com
14 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
69.
waliag87@gmail.com
gwalia@amazon.com
13 shared files
packages/engines/snakemake/Dockerfile
packages/engines/snakemake/THIRD-PARTY
packages/engines/new-engine-template/THIRD-PARTY
packages/engines/new-engine-template/Dockerfile
packages/engines/snakemake/.gitignore
packages/engines/snakemake/README.md
packages/engines/snakemake/LICENSE
packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh
packages/engines/new-engine-template/.aws.sh
packages/engines/new-engine-template/buildspec.yml
packages/engines/snakemake/buildspec.yml
packages/engines/new-engine-template/DEVELOPMENT.MD
packages/engines/snakemake/snakemake.aws.sh
70.
dovydenk@amazon.com
30308260+abassyiouni@users.noreply.github.com
13 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
71.
atahlil@amazon.com
IllyaYalovyy@users.noreply.github.com
13 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
72.
dovydenk@amazon.com
2242982+ghawk1ns@users.noreply.github.com
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/.eslintrc.js
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
73.
dovydenk@amazon.com
guyhawki@amazon.com
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/.eslintrc.js
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
74.
mrschre@amazon.com
30308260+abassyiouni@users.noreply.github.com
12 shared files
packages/cli/internal/pkg/cli/format/table.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
75.
atahlil@amazon.com
30308260+abassyiouni@users.noreply.github.com
12 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
76.
7497012+a-li@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
12 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
77.
93626953+anisatahlil@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
12 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
78.
93626953+anisatahlil@users.noreply.github.com
guyhawki@amazon.com
12 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
79.
mrschre@amazon.com
yalovyyi@amazon.com
11 shared files
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
80.
tayneely@amazon.com
mrschre@amazon.com
11 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
81.
7497012+a-li@users.noreply.github.com
dovydenk@amazon.com
11 shared files
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
82.
wleepang@gmail.com
2242982+ghawk1ns@users.noreply.github.com
10 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
83.
wleepang@gmail.com
guyhawki@amazon.com
10 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
84.
30308260+abassyiouni@users.noreply.github.com
elliotsm@amazon.com
9 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/cmd/application/main.go
85.
mrschre@amazon.com
7497012+a-li@users.noreply.github.com
9 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/flag.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
86.
93286759+aws-genomics-automation@users.noreply.github.com
wleepang@gmail.com
9 shared files
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
87.
7497012+a-li@users.noreply.github.com
dtzeng@users.noreply.github.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
88.
7497012+a-li@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
89.
dtzeng@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
90.
dtzeng@users.noreply.github.com
tneely@users.noreply.github.com
8 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
91.
wleepang@gmail.com
IllyaYalovyy@users.noreply.github.com
7 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
92.
wleepang@gmail.com
yalovyyi@amazon.com
7 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
93.
dtzeng@users.noreply.github.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
94.
dtzeng@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
95.
dtzeng@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
96.
dtzeng@amazon.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
97.
dtzeng@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
98.
elliotsm@amazon.com
yalovyyi@amazon.com
6 shared files
site/content/en/docs/Concepts/workflows.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/contexts.md
99.
dovydenk@amazon.com
mrschre@amazon.com
6 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/package-lock.json
packages/cdk/lib/stacks/context-stack.ts
100.
93626953+anisatahlil@users.noreply.github.com
tneely@users.noreply.github.com
6 shared files
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/cmd/application/main.go
| Contributor 1 | Contributor 2 | # shared files | |
|---|---|---|---|
| 1. | 2242982+ghawk1ns@users.noreply.github.com | guyhawki@amazon.com |
455 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow/workflow_details.go packages/common/aws/s3/interface.go site/config.toml packages/common/aws/sts/get_account.go packages/wes_api/client/model_error_response.go examples/gatk-best-practices-project/workflow-diagrams/cram-to-bam.dot.png examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/options.json packages/common/aws/cfn/get_stack_status.go packages/common/aws/cfn/get_stack_exports.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/TESTING.md packages/common/aws/ecr/ecr_client_test.go packages/cli/internal/pkg/constants/product.go packages/common/aws/ddb/write_workflow_instance.go packages/cli/internal/pkg/wes/option/workflow_attachment.go packages/common/aws/cdk/append_context_arguments.go examples/gatk-best-practices-project/gatk4-germline-snps-indels/options.json site/content/en/docs/Concepts/workflows.md packages/common/aws/cwl/client.go packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/spec/data.go packages/wes_api/client/.travis.yml examples/gatk-best-practices-project/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json packages/cli/internal/pkg/storage/project_client_test.go packages/cli/internal/pkg/cli/context/manager_deploy.go examples/gatk-best-practices-project/workflow-diagrams/gatk4-basic-joint-genotyping.dot.png packages/cli/internal/pkg/cli/context/context_environment.go packages/common/aws/cdk/deploy_app.go examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/cli/logs_adapter.go packages/common/Makefile packages/common/aws/cwl/stream_logs_test.go site/LICENSE packages/hello.go packages/common/aws/ddb/list_workflow_instances_by_name.go packages/wes_api/client/response.go packages/cli/internal/pkg/term/color/color_test.go packages/cli/LICENSE site/content/en/community/_index.md packages/wes_api/client/model_workflow_type_version.go packages/common/aws/cwl/stream_logs.go packages/cdk/apps/context/app.ts packages/common/aws/cdk/execute_cdk.go packages/common/aws/cdk/parse_output_test.go packages/cli/Makefile extras/agc-minimal-permissions/.npmignore packages/cdk/lib/types/compute-type.ts examples/gatk-best-practices-project/workflow-diagrams/gatk4-data-processing.dot packages/wes_api/client/api/openapi.yaml site/static/favicons/android-chrome-512x512.png packages/common/logging/prefix.go packages/wes_api/client/api_workflow_execution_service.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/spec/workflow.go site/content/en/docs/Best practices/controllingcosts.md packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/common/aws/ssm/client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/gatk-best-practices-project/workflow-diagrams/gatk4-germline-snps-indels.dot.png packages/common/aws/util/time.go site/content/en/docs/Concepts/namespaces.md buildspec.yml examples/demo-wdl-project/workflows/read/read.wdl site/layouts/404.html packages/cli/internal/pkg/cli/spec/project.go packages/cli/.dockerignore packages/cli/internal/pkg/cli/workflow/workflow_list_test.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json examples/demo-wdl-project/workflows/haplotype/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json packages/cli/internal/pkg/cli/project_test.go examples/gatk-best-practices-project/workflow-diagrams/paired-fastq-to-unmapped-bam.dot.png examples/demo-nextflow-project/agc-project.yaml examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/context/interface.go extras/agc-minimal-permissions/cdk.json packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/common/aws/ecr/Interface.go packages/wes_api/client/sigv4_client.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go README.md packages/cli/internal/pkg/cli/context_test.go packages/cdk/README.md packages/common/aws/ddb/list_workflow_instances_by_context.go packages/cli/internal/pkg/cli/spec/context.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/common/aws/provider.go examples/demo-wdl-project/workflows/hello/hello.wdl packages/common/aws/provider_test.go packages/common/internal/pkg/mocks/io/mock_interfaces.go ... |
| 2. | tneely@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
122 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cdk/apps/context/app.ts packages/cli/Makefile packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go buildspec.yml packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/cli/workflow/workflow_list_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/cli/context/common_test.go scripts/update-tags.sh packages/cli/internal/pkg/cli/context.go packages/cli/cmd/application/template/template.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go .gitignore packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/context/manager_status_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/cli/context_status_test.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/project_describe_test.go packages/cdk/lib/constructs/secure-service.ts packages/cli/internal/pkg/mocks/wes/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go packages/cli/internal/pkg/cli/configure.go scripts/run-dev.sh packages/cli/internal/pkg/mocks/wes/interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/cli/workflow/workflow_describe_test.go packages/cli/internal/pkg/cli/logs.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cdk/lib/env/core-app-parameters.ts packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod CONTRIBUTING.md packages/cli/internal/pkg/cli/workflow_status_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/awsresources/awsresources.go packages/cli/internal/pkg/cli/account_deactivate_test.go packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go ... |
| 3. | 93286759+aws-genomics-automation@users.noreply.github.com | atahlil@amazon.com |
119 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cdk/lib/wes_adapter/index.py examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py site/content/en/docs/Workflow engines/miniwdl.md packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/typing_utils.py examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py site/package-lock.json packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts site/themes/docsy packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md packages/cdk/lib/wes_adapter/rest_api/models/service_info.py examples/gatk-best-practices-project-miniwdl/README.md packages/cdk/lib/wes_adapter/rest_api/util.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cdk/lib/wes_adapter/rest_api/workflow/input.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/error_handling.py site/content/en/docs/Concepts/contexts.md packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json .github/workflows/ci.yml packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl ... |
| 4. | tneely@users.noreply.github.com | guyhawki@amazon.com |
116 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cdk/apps/context/app.ts packages/cli/Makefile packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go buildspec.yml packages/cli/internal/pkg/cli/workflow/workflow_list_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/cli/context/common_test.go scripts/update-tags.sh packages/cli/internal/pkg/cli/context.go packages/cli/cmd/application/template/template.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go .gitignore packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/context/manager_status_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/cli/context_status_test.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/project_describe_test.go packages/cdk/lib/constructs/secure-service.ts packages/cli/internal/pkg/mocks/wes/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go packages/cli/internal/pkg/cli/configure.go scripts/run-dev.sh packages/cli/internal/pkg/mocks/wes/interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/cli/workflow/workflow_describe_test.go packages/cli/internal/pkg/cli/logs.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cdk/lib/env/core-app-parameters.ts packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go CONTRIBUTING.md packages/cli/internal/pkg/cli/workflow_status_test.go packages/cli/internal/pkg/cli/awsresources/awsresources.go packages/cli/internal/pkg/cli/account_deactivate_test.go packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_status.go packages/cdk/lib/env/index.ts ... |
| 5. | 93286759+aws-genomics-automation@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
97 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/Makefile packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts buildspec.yml packages/cli/internal/pkg/logging/prefix.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json packages/cdk/lib/constants.ts site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md .gitignore packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cdk/lib/constructs/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/logs_core.go extras/agc-minimal-permissions/package-lock.json scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go .github/workflows/codeql-analysis.yml packages/cli/internal/pkg/cli/context_destroy.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md extras/agc-minimal-permissions/package.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json site/README.md packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/constructs/batch.ts site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go packages/cli/internal/pkg/cli/logs_core_test.go Makefile packages/cdk/lib/types/index.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/cli/context/manager_info.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 6. | 93286759+aws-genomics-automation@users.noreply.github.com | mrschre@amazon.com |
94 shared files
packages/cli/internal/pkg/cli/context/manager_list.go packages/cli/internal/pkg/cli/format/table.go examples/nf-core-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cdk/lib/roles/cromwell-engine-role.ts examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json site/content/en/docs/Concepts/workflows.md site/content/en/docs/Workflow engines/_index.md examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json packages/cli/internal/pkg/cli/workflow_output.go examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json THIRD-PARTY packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/nf-core-project/workflows/rnaseq/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json site/content/en/docs/Workflow engines/miniwdl.md examples/demo-wdl-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/workflow/workflow_output.go packages/cli/internal/pkg/cli/workflow_output_test.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md examples/gatk-best-practices-project/README.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/project_validate_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_output_test.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/project_validate.go packages/cli/internal/pkg/cli/types/context.go site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl packages/cli/internal/pkg/cli/describe_output_test.go examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/nf-core-project/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl packages/cli/internal/pkg/mocks/manager/interfaces.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go site/content/en/docs/Concepts/projects.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl packages/cli/internal/pkg/cli/project.go examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl site/content/en/docs/Getting started/installation.md examples/nf-core-project/workflows/rnaseq/inputs.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/slices/slice_utils.go packages/cli/internal/pkg/slices/slice_utils_test.go |
| 7. | 93286759+aws-genomics-automation@users.noreply.github.com | guyhawki@amazon.com |
91 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/Makefile packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts buildspec.yml examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json packages/cdk/lib/constants.ts site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md .gitignore packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cdk/lib/constructs/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/logs_core.go extras/agc-minimal-permissions/package-lock.json scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md extras/agc-minimal-permissions/package.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json site/README.md packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cdk/lib/constructs/batch.ts site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go packages/cli/internal/pkg/cli/logs_core_test.go Makefile packages/cdk/lib/types/index.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/context/manager_info.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 8. | 93286759+aws-genomics-automation@users.noreply.github.com | tneely@users.noreply.github.com |
88 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go examples/nf-core-project/agc-project.yaml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go buildspec.yml packages/cli/internal/pkg/logging/prefix.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go .versionrc packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cli/internal/pkg/mocks/io/mock_interfaces.go CHANGELOG.md .gitignore packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go bump.sh packages/cli/internal/pkg/cli/logs_core.go scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/account_activate_test.go scripts/package-release.sh packages/cli/internal/pkg/aws/cwl/get_logs.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/cli/context/manager_info.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 9. | elliotsm@amazon.com | tneely@users.noreply.github.com |
86 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/aws/s3/bucket_exists.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/aws/ddb/get_workflow_instance_by_id.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cfn/get_stack_status.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_context.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cfn/list_stacks.go packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/aws/s3/upload_file.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/aws/ddb/list_workflows.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/batch/get_jobs.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/aws/sts/get_account.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/aws/ecr/image_listable.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/aws/cfn/get_stack_exports.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_name.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/s3/sync_file.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cfn/delete_stack.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/aws/cwl/get_logs.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/aws/ecr/image_reference.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go packages/cli/internal/pkg/aws/ddb/write_workflow_instance.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 10. | elliotsm@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
71 shared files
packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/cli/spec/project.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/cli.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/clierror/cli_error.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 11. | elliotsm@amazon.com | guyhawki@amazon.com |
68 shared files
packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/cli/spec/project.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/cli.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/clierror/cli_error.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 12. | braidn@amazon.com | tayneely@amazon.com |
64 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 13. | atahlil@amazon.com | dovydenk@amazon.com |
64 shared files
packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/package.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/.eslintrc.js packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl |
| 14. | 93286759+aws-genomics-automation@users.noreply.github.com | dovydenk@amazon.com |
64 shared files
packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl |
| 15. | tneely@users.noreply.github.com | braidn@amazon.com |
62 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 16. | 2242982+ghawk1ns@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
58 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/storage/project_client_test.go site/content/en/community/_index.md packages/cli/Makefile site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md packages/cli/internal/pkg/logging/prefix.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Concepts/logs.md scripts/cli/install.sh packages/cli/internal/pkg/cli/format/text_test.go site/README.md site/content/en/about/_index.html packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md packages/cli/internal/pkg/cli/logs_core_test.go site/content/en/docs/Concepts/_index.md packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go site/content/en/docs/Best practices/scalingworkloads.md |
| 17. | braidn@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
58 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cdk/Makefile packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go scripts/cli/install.sh packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cdk/lib/stacks/nested/nested-engine-stack.ts packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 18. | braidn@amazon.com | guyhawki@amazon.com |
55 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cdk/Makefile packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go scripts/cli/install.sh packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cdk/lib/stacks/nested/nested-engine-stack.ts packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cdk/lib/stacks/index.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 19. | 93286759+aws-genomics-automation@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
54 shared files
site/content/en/docs/Concepts/accounts.md site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/version/cache.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/version/replenish_func.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/version/cache_test.go packages/cli/internal/pkg/version/interfaces.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/version/store_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/version/version_check_result.go packages/cli/internal/pkg/version/store.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go examples/demo-wdl-project/workflows/words/MANIFEST.json scripts/run-dev.sh site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/version/checker.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/version/replenish_func_test.go site/README.md packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/version/check_func.go packages/cli/internal/pkg/version/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/version/info.go packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/version/checker_test.go packages/cli/internal/pkg/version/check_func_test.go examples/demo-wdl-project/workflows/read/main.wdl |
| 20. | IllyaYalovyy@users.noreply.github.com | guyhawki@amazon.com |
54 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/storage/project_client_test.go site/content/en/community/_index.md packages/cli/Makefile site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Concepts/logs.md scripts/cli/install.sh packages/cli/internal/pkg/cli/format/text_test.go site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md packages/cli/internal/pkg/cli/logs_core_test.go site/content/en/docs/Concepts/_index.md packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go site/content/en/docs/Best practices/scalingworkloads.md |
| 21. | 93286759+aws-genomics-automation@users.noreply.github.com | elliotsm@amazon.com |
50 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go .github/ISSUE_TEMPLATE/feature_request.md packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go .github/ISSUE_TEMPLATE/bug_report.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/PULL_REQUEST_TEMPLATE.md packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cwl/get_logs.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go |
| 22. | braidn@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
48 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 23. | atahlil@amazon.com | mrschre@amazon.com |
47 shared files
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json site/content/en/docs/Workflow engines/miniwdl.md examples/demo-wdl-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts site/package-lock.json packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts site/themes/docsy examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl site/content/en/docs/Getting started/installation.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl |
| 24. | elliotsm@amazon.com | braidn@amazon.com |
46 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 25. | mrschre@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
45 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go site/content/en/docs/Concepts/contexts.md packages/cdk/package-lock.json packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 26. | tneely@users.noreply.github.com | tayneely@amazon.com |
44 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 27. | tayneely@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
43 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 28. | mrschre@amazon.com | guyhawki@amazon.com |
42 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go site/content/en/docs/Concepts/contexts.md packages/cdk/package-lock.json packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 29. | atahlil@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
41 shared files
packages/cli/Makefile packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json site/package-lock.json packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts site/themes/docsy packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cdk/.eslintrc.js site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/configure_describe.go |
| 30. | braidn@amazon.com | atahlil@amazon.com |
41 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/requirements.txt packages/cli/internal/pkg/storage/interfaces.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 31. | tayneely@amazon.com | guyhawki@amazon.com |
40 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 32. | atahlil@amazon.com | guyhawki@amazon.com |
40 shared files
packages/cli/Makefile packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json site/package-lock.json packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cdk/.eslintrc.js site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/configure_describe.go |
| 33. | 7497012+a-li@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
39 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go .versionrc packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md .github/semantic.yml packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py .github/workflows/stale_issue.yml packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py bump.sh packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/config/config_client.go .github/PULL_REQUEST_TEMPLATE.md scripts/package-release.sh site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 34. | elliotsm@amazon.com | tayneely@amazon.com |
38 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 35. | 93286759+aws-genomics-automation@users.noreply.github.com | 30308260+abassyiouni@users.noreply.github.com |
37 shared files
packages/cli/internal/pkg/cli/format/table.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/workflow_auto_complete.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/cli/logs_core.go scripts/context-deploy-benchmark/context-benchmark.sh packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/cli/workflow/interface.go packages/cli/internal/pkg/cli/workflow_auto_complete_test.go packages/cli/internal/pkg/cli/workflow_run.go scripts/context-deploy-benchmark/cromwell/agc-project.yaml packages/cli/internal/pkg/cli/context_destroy.go scripts/context-deploy-benchmark/nextflow/agc-project.yaml packages/cli/internal/pkg/cli/context_auto_complete_test.go packages/cli/internal/pkg/cli/context_auto_complete.go packages/cli/internal/pkg/mocks/workflow/mock_interfaces.go packages/cli/internal/pkg/cli/format/table_test.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/mocks/workflow/interfaces.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 36. | IllyaYalovyy@users.noreply.github.com | yalovyyi@amazon.com |
35 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go examples/demo-wdl-project/workflows/haplotype/MANIFEST.json site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md examples/demo-nextflow-project/workflows/rnaseq/inputs.json site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml site/content/en/docs/Best practices/scalingworkloads.md |
| 37. | 2242982+ghawk1ns@users.noreply.github.com | yalovyyi@amazon.com |
33 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md packages/common/Makefile site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md site/content/en/docs/Best practices/scalingworkloads.md |
| 38. | yalovyyi@amazon.com | guyhawki@amazon.com |
33 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md packages/common/Makefile site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md site/content/en/docs/Best practices/scalingworkloads.md |
| 39. | IllyaYalovyy@users.noreply.github.com | tneely@users.noreply.github.com |
33 shared files
packages/cli/internal/pkg/aws/ddb/client.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go scripts/run-dev.sh site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go |
| 40. | braidn@amazon.com | 7497012+a-li@users.noreply.github.com |
33 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/osutils/utils_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context/manager_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 41. | atahlil@amazon.com | tneely@users.noreply.github.com |
32 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/configure_email.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 42. | tayneely@amazon.com | atahlil@amazon.com |
27 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 43. | 30308260+abassyiouni@users.noreply.github.com | tneely@users.noreply.github.com |
26 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 44. | tneely@users.noreply.github.com | 7497012+a-li@users.noreply.github.com |
26 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/logs_workflow_test.go .versionrc packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md bump.sh packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go scripts/package-release.sh site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 45. | tneely@users.noreply.github.com | mrschre@amazon.com |
25 shared files
examples/nf-core-project/agc-project.yaml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 46. | 7497012+a-li@users.noreply.github.com | atahlil@amazon.com |
25 shared files
packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 47. | tayneely@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
24 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 48. | elliotsm@amazon.com | IllyaYalovyy@users.noreply.github.com |
24 shared files
site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 49. | 7497012+a-li@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/wes_api/client/model_log.go packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 50. | 7497012+a-li@users.noreply.github.com | guyhawki@amazon.com |
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packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/wes_api/client/model_log.go packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 51. | atahlil@amazon.com | elliotsm@amazon.com |
22 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 52. | braidn@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
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packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 53. | 7497012+a-li@users.noreply.github.com | elliotsm@amazon.com |
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packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context/manager_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go .github/PULL_REQUEST_TEMPLATE.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go |
| 54. | 30308260+abassyiouni@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 55. | braidn@amazon.com | IllyaYalovyy@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go scripts/cli/install.sh packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 56. | braidn@amazon.com | dovydenk@amazon.com |
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packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 57. | mrschre@amazon.com | IllyaYalovyy@users.noreply.github.com |
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site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md packages/cli/go.mod site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 58. | 30308260+abassyiouni@users.noreply.github.com | guyhawki@amazon.com |
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packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 59. | braidn@amazon.com | mrschre@amazon.com |
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packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context_deploy_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 60. | tayneely@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
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packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 61. | 93626953+anisatahlil@users.noreply.github.com | braidn@amazon.com |
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packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 62. | 93626953+anisatahlil@users.noreply.github.com | tayneely@amazon.com |
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packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 63. | 93626953+anisatahlil@users.noreply.github.com | atahlil@amazon.com |
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packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 64. | tayneely@amazon.com | 7497012+a-li@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 65. | 93286759+aws-genomics-automation@users.noreply.github.com | yalovyyi@amazon.com |
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site/content/en/docs/Concepts/accounts.md site/content/en/docs/Concepts/workflows.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md scripts/run-dev.sh site/content/en/_index.html site/content/en/docs/Concepts/contexts.md site/README.md site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 66. | tneely@users.noreply.github.com | dovydenk@amazon.com |
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packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/context-stack.ts |
| 67. | elliotsm@amazon.com | mrschre@amazon.com |
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| 68. | tayneely@amazon.com | IllyaYalovyy@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 69. | waliag87@gmail.com | gwalia@amazon.com |
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packages/engines/snakemake/Dockerfile packages/engines/snakemake/THIRD-PARTY packages/engines/new-engine-template/THIRD-PARTY packages/engines/new-engine-template/Dockerfile packages/engines/snakemake/.gitignore packages/engines/snakemake/README.md packages/engines/snakemake/LICENSE packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh packages/engines/new-engine-template/ packages/engines/new-engine-template/buildspec.yml packages/engines/snakemake/buildspec.yml packages/engines/new-engine-template/DEVELOPMENT.MD packages/engines/snakemake/snakemake.aws.sh |
| 70. | dovydenk@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
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packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 71. | atahlil@amazon.com | IllyaYalovyy@users.noreply.github.com |
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packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 72. | dovydenk@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/util/index.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/.eslintrc.js packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 73. | dovydenk@amazon.com | guyhawki@amazon.com |
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/util/index.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/.eslintrc.js packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 74. | mrschre@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
12 shared files
packages/cli/internal/pkg/cli/format/table.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 75. | atahlil@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
12 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 76. | 7497012+a-li@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
12 shared files
packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 77. | 93626953+anisatahlil@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
12 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 78. | 93626953+anisatahlil@users.noreply.github.com | guyhawki@amazon.com |
12 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 79. | mrschre@amazon.com | yalovyyi@amazon.com |
11 shared files
site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md |
| 80. | tayneely@amazon.com | mrschre@amazon.com |
11 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 81. | 7497012+a-li@users.noreply.github.com | dovydenk@amazon.com |
11 shared files
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 82. | wleepang@gmail.com | 2242982+ghawk1ns@users.noreply.github.com |
10 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md |
| 83. | wleepang@gmail.com | guyhawki@amazon.com |
10 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md |
| 84. | 30308260+abassyiouni@users.noreply.github.com | elliotsm@amazon.com |
9 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/cmd/application/main.go |
| 85. | mrschre@amazon.com | 7497012+a-li@users.noreply.github.com |
9 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/flag.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go examples/gatk-best-practices-project-miniwdl/agc-project.yaml site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 86. | 93286759+aws-genomics-automation@users.noreply.github.com | wleepang@gmail.com |
9 shared files
site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 87. | 7497012+a-li@users.noreply.github.com | dtzeng@users.noreply.github.com |
8 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 88. | 7497012+a-li@users.noreply.github.com | dtzeng@amazon.com |
8 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 89. | dtzeng@users.noreply.github.com | dtzeng@amazon.com |
8 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 90. | dtzeng@users.noreply.github.com | tneely@users.noreply.github.com |
8 shared files
packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 91. | wleepang@gmail.com | IllyaYalovyy@users.noreply.github.com |
7 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 92. | wleepang@gmail.com | yalovyyi@amazon.com |
7 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 93. | dtzeng@users.noreply.github.com | braidn@amazon.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 94. | dtzeng@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 95. | dtzeng@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 96. | dtzeng@amazon.com | braidn@amazon.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 97. | dtzeng@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
7 shared files
packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 98. | elliotsm@amazon.com | yalovyyi@amazon.com |
6 shared files
site/content/en/docs/Concepts/workflows.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/contexts.md |
| 99. | dovydenk@amazon.com | mrschre@amazon.com |
6 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/package-lock.json packages/cdk/lib/stacks/context-stack.ts |
| 100. | 93626953+anisatahlil@users.noreply.github.com | tneely@users.noreply.github.com |
6 shared files
packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/cmd/application/main.go |
12 contributors (27 commits):
| # | Contributor |
First Commit |
Latest Commit |
Commits Count |
File Updates (per extension) |
|---|---|---|---|---|---|
| 1. | 7497012+a-li@users.noreply.github.com | 2021-09-29 | 2022-01-26 | 6 (22%) | go (17), md (5), json (2), png (2), py (1) |
| 2. | waliag87@gmail.com | 2022-01-04 | 2022-01-12 | 5 (18%) | (6), yml (4), sh (3), md (1), json (1) |
| 3. | gwalia@amazon.com | 2021-12-30 | 2022-01-07 | 4 (14%) | yml (3), (2), sh (1) |
| 4. | tneely@users.noreply.github.com | 2021-09-27 | 2022-01-10 | 3 (11%) | ts (3), sh (1), yaml (1) |
| 5. | dtzeng@users.noreply.github.com | 2022-01-21 | 2022-01-28 | 2 (7%) | go (7), md (1), sum (1), mod (1) |
| 6. | elliotsm@amazon.com | 2021-09-28 | 2022-01-25 | 1 (3%) | go (17), json (2), md (1) |
| 7. | IllyaYalovyy@users.noreply.github.com | 2021-09-25 | 2022-01-05 | 1 (3%) | MD (1) |
| 8. | 2242982+ghawk1ns@users.noreply.github.com | 2021-09-07 | 2022-01-28 | 1 (3%) | go (11), json (3), md (2), ts (2), (1) |
| 9. | 30308260+abassyiouni@users.noreply.github.com | 2021-09-30 | 2022-01-05 | 1 (3%) | go (1) |
| 10. | dtzeng@amazon.com | 2022-01-20 | 2022-01-20 | 1 (3%) | go (7), md (1) |
| 11. | chuanyut@amazon.com | 2022-01-13 | 2022-01-13 | 1 (3%) | go (2), json (1), ts (1) |
| 12. | evanyui@hotmail.com | 2022-01-11 | 2022-01-11 | 1 (3%) | go (2), json (1), ts (1) |
Contributor Dependencies
A contributor dependency is detected if two contributors have changed the same files in the past 30 days.
C-median: 2.0
A half of the contributors has more than 2.0 connections, and a half has less than this number.
C-mean: 2.2
An average number of connections a contributor has with other contributors.
C-index: 3.0
There are 3.0 contributors with 3.0 or more connections.
Most Connected Contributors
| Contributor | # connections | # commits | |
|---|---|---|---|
| 1. | 7497012+a-li@users.noreply.github.com | 3 | 6 |
| 2. | dtzeng@users.noreply.github.com | 3 | 2 |
| 3. | 2242982+ghawk1ns@users.noreply.github.com | 3 | 1 |
| 4. | dtzeng@amazon.com | 3 | 1 |
| 5. | waliag87@gmail.com | 2 | 5 |
| 6. | elliotsm@amazon.com | 2 | 1 |
| 7. | chuanyut@amazon.com | 2 | 1 |
| 8. | evanyui@hotmail.com | 2 | 1 |
| 9. | gwalia@amazon.com | 1 | 4 |
| 10. | IllyaYalovyy@users.noreply.github.com | 1 | 1 |
| 11. | tneely@users.noreply.github.com | 0 | 3 |
| 12. | 30308260+abassyiouni@users.noreply.github.com | 0 | 1 |
Contributor Dependencies via Shared Files
show graph...
The number on lines shows the number of same files that both persons changed in past 30 days.
- open 3D force graph
Contributor 1
Contributor 2
# shared files
1.
7497012+a-li@users.noreply.github.com
dtzeng@users.noreply.github.com
8 shared files
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
2.
7497012+a-li@users.noreply.github.com
dtzeng@amazon.com
8 shared files
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
3.
dtzeng@users.noreply.github.com
dtzeng@amazon.com
8 shared files
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
4.
chuanyut@amazon.com
evanyui@hotmail.com
4 shared files
packages/cdk/npm-shrinkwrap.json
packages/wes_api/client/client.go
packages/cdk/lib/util/instance-types.ts
packages/wes_api/client/api_workflow_execution_service.go
5.
waliag87@gmail.com
gwalia@amazon.com
3 shared files
packages/engines/snakemake/Dockerfile
packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh
packages/engines/snakemake/buildspec.yml
6.
elliotsm@amazon.com
chuanyut@amazon.com
1 shared file
packages/cdk/npm-shrinkwrap.json
7.
elliotsm@amazon.com
evanyui@hotmail.com
1 shared file
packages/cdk/npm-shrinkwrap.json
8.
2242982+ghawk1ns@users.noreply.github.com
7497012+a-li@users.noreply.github.com
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
9.
2242982+ghawk1ns@users.noreply.github.com
dtzeng@users.noreply.github.com
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
10.
2242982+ghawk1ns@users.noreply.github.com
dtzeng@amazon.com
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
11.
IllyaYalovyy@users.noreply.github.com
waliag87@gmail.com
1 shared file
packages/engines/new-engine-template/DEVELOPMENT.MD
| Contributor 1 | Contributor 2 | # shared files | |
|---|---|---|---|
| 1. | 7497012+a-li@users.noreply.github.com | dtzeng@users.noreply.github.com |
8 shared files
site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 2. | 7497012+a-li@users.noreply.github.com | dtzeng@amazon.com |
8 shared files
site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 3. | dtzeng@users.noreply.github.com | dtzeng@amazon.com |
8 shared files
site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 4. | chuanyut@amazon.com | evanyui@hotmail.com |
4 shared files
packages/cdk/npm-shrinkwrap.json packages/wes_api/client/client.go packages/cdk/lib/util/instance-types.ts packages/wes_api/client/api_workflow_execution_service.go |
| 5. | waliag87@gmail.com | gwalia@amazon.com |
3 shared files
packages/engines/snakemake/Dockerfile packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh packages/engines/snakemake/buildspec.yml |
| 6. | elliotsm@amazon.com | chuanyut@amazon.com |
1 shared file
packages/cdk/npm-shrinkwrap.json |
| 7. | elliotsm@amazon.com | evanyui@hotmail.com |
1 shared file
packages/cdk/npm-shrinkwrap.json |
| 8. | 2242982+ghawk1ns@users.noreply.github.com | 7497012+a-li@users.noreply.github.com |
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go |
| 9. | 2242982+ghawk1ns@users.noreply.github.com | dtzeng@users.noreply.github.com |
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go |
| 10. | 2242982+ghawk1ns@users.noreply.github.com | dtzeng@amazon.com |
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go |
| 11. | IllyaYalovyy@users.noreply.github.com | waliag87@gmail.com |
1 shared file
packages/engines/new-engine-template/DEVELOPMENT.MD |
24 contributors (124 commits):
| # | Contributor |
First Commit |
Latest Commit |
Commits Count |
File Updates (per extension) |
|---|---|---|---|---|---|
| 1. | atahlil@amazon.com | 2021-11-09 | 2021-11-12 | 21 (16%) | go (89), py (40), json (25), ts (13), wdl (10) |
| 2. | tneely@users.noreply.github.com | 2021-09-27 | 2022-01-10 | 14 (11%) | ts (52), sh (7), go (6), json (3), md (2) |
| 3. | 7497012+a-li@users.noreply.github.com | 2021-09-29 | 2022-01-26 | 13 (10%) | go (27), md (10), ts (6), py (6), json (4) |
| 4. | mrschre@amazon.com | 2021-09-28 | 2021-12-13 | 12 (9%) | json (21), md (11), wdl (11), yaml (3), (2) |
| 5. | braidn@amazon.com | 2021-11-01 | 2021-12-17 | 12 (9%) | go (57), ts (30), py (10), md (6), json (4) |
| 6. | elliotsm@amazon.com | 2021-09-28 | 2022-01-25 | 10 (8%) | go (71), ts (4), json (3), md (2) |
| 7. | IllyaYalovyy@users.noreply.github.com | 2021-09-25 | 2022-01-05 | 7 (5%) | go (12), MD (1) |
| 8. | waliag87@gmail.com | 2022-01-04 | 2022-01-12 | 5 (4%) | (6), yml (4), sh (3), md (1), json (1) |
| 9. | gwalia@amazon.com | 2021-12-30 | 2022-01-07 | 5 (4%) | (7), yml (5), sh (3), md (1), MD (1) |
| 10. | 2242982+ghawk1ns@users.noreply.github.com | 2021-09-07 | 2022-01-28 | 3 (2%) | go (17), md (3), json (3), ts (2), (1) |
| 11. | 30308260+abassyiouni@users.noreply.github.com | 2021-09-30 | 2022-01-05 | 3 (2%) | ts (9), yaml (2), go (1), sh (1) |
| 12. | 93626953+anisatahlil@users.noreply.github.com | 2021-11-15 | 2021-12-07 | 3 (2%) | go (22) |
| 13. | dovydenk@amazon.com | 2021-09-28 | 2021-11-24 | 2 (1%) | py (40), ts (17), json (4), sh (3), yaml (2) |
| 14. | dtzeng@users.noreply.github.com | 2022-01-21 | 2022-01-28 | 2 (1%) | go (7), md (1), sum (1), mod (1) |
| 15. | dovydenko.andrej@gmail.com | 2021-12-10 | 2021-12-11 | 2 (1%) | (11), md (3), yml (3), sh (2), sum (1) |
| 16. | dzl@88665a545034.ant.amazon.com | 2021-11-15 | 2021-11-17 | 2 (1%) | md (2), json (1) |
| 17. | wleepang@gmail.com | 2021-09-27 | 2021-11-10 | 1 (<1%) | ts (2) |
| 18. | dtzeng@amazon.com | 2022-01-20 | 2022-01-20 | 1 (<1%) | go (7), md (1) |
| 19. | chuanyut@amazon.com | 2022-01-13 | 2022-01-13 | 1 (<1%) | go (2), json (1), ts (1) |
| 20. | evanyui@hotmail.com | 2022-01-11 | 2022-01-11 | 1 (<1%) | go (2), json (1), ts (1) |
| 21. | anovak@soe.ucsc.edu | 2021-12-21 | 2021-12-21 | 1 (<1%) | md (1) |
| 22. | tayneely@amazon.com | 2021-11-17 | 2021-11-17 | 1 (<1%) | go (51), ts (9), md (2), json (1), yml (1) |
| 23. | awlucattini@icloud.com | 2021-11-16 | 2021-11-16 | 1 (<1%) | md (1) |
| 24. | 93286759+aws-genomics-automation@users.noreply.github.com | 2021-11-11 | 2021-11-11 | 1 (<1%) | go (90), py (40), ts (31), json (29), md (23) |
Contributor Dependencies
A contributor dependency is detected if two contributors have changed the same files in the past 90 days.
C-median: 10.5
A half of the contributors has more than 10.5 connections, and a half has less than this number.
C-mean: 10.0
An average number of connections a contributor has with other contributors.
C-index: 11.0
There are 11.0 contributors with 11.0 or more connections.
Most Connected Contributors
| Contributor | # connections | # commits | |
|---|---|---|---|
| 1. | 93286759+aws-genomics-automation@users.noreply.github.com | 20 | 1 |
| 2. | braidn@amazon.com | 19 | 12 |
| 3. | tneely@users.noreply.github.com | 17 | 14 |
| 4. | tayneely@amazon.com | 17 | 1 |
| 5. | 7497012+a-li@users.noreply.github.com | 16 | 13 |
| 6. | elliotsm@amazon.com | 16 | 10 |
| 7. | atahlil@amazon.com | 15 | 21 |
| 8. | 2242982+ghawk1ns@users.noreply.github.com | 13 | 3 |
| 9. | dtzeng@users.noreply.github.com | 13 | 2 |
| 10. | IllyaYalovyy@users.noreply.github.com | 12 | 7 |
| 11. | dtzeng@amazon.com | 12 | 1 |
| 12. | mrschre@amazon.com | 11 | 12 |
| 13. | 93626953+anisatahlil@users.noreply.github.com | 10 | 3 |
| 14. | dovydenk@amazon.com | 9 | 2 |
| 15. | 30308260+abassyiouni@users.noreply.github.com | 6 | 3 |
| 16. | dzl@88665a545034.ant.amazon.com | 6 | 2 |
| 17. | chuanyut@amazon.com | 5 | 1 |
| 18. | evanyui@hotmail.com | 5 | 1 |
| 19. | waliag87@gmail.com | 4 | 5 |
| 20. | anovak@soe.ucsc.edu | 4 | 1 |
| 21. | awlucattini@icloud.com | 4 | 1 |
| 22. | gwalia@amazon.com | 3 | 5 |
| 23. | wleepang@gmail.com | 3 | 1 |
| 24. | dovydenko.andrej@gmail.com | 2 | 2 |
Contributor Dependencies via Shared Files
show graph...
The number on lines shows the number of same files that both persons changed in past 90 days.
- open 3D force graph
Contributor 1
Contributor 2
# shared files
1.
93286759+aws-genomics-automation@users.noreply.github.com
atahlil@amazon.com
119 shared files
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cli/internal/pkg/cli/logs_workflow.go
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
.github/workflows/ci.yml
examples/gatk-best-practices-project-miniwdl/README.md
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
site/package-lock.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/constants.ts
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/rest_api/util.py
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
CHANGELOG.md
packages/cdk/lib/wes_adapter/rest_api/models/state.py
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
site/content/en/docs/Getting started/installation.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cdk/lib/wes_adapter/rest_api/__init__.py
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
packages/cdk/lib/wes_adapter/init-local-server.sh
site/themes/docsy
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
site/content/en/docs/Workflow engines/miniwdl.md
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
...
2.
atahlil@amazon.com
dovydenk@amazon.com
64 shared files
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/package.json
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/.eslintrc.js
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
packages/cdk/lib/stacks/nested/batch-stack.ts
3.
braidn@amazon.com
tayneely@amazon.com
64 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
CHANGELOG.md
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/cli/context/util.go
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/new_client.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/aws/cdk/clear_context.go
4.
93286759+aws-genomics-automation@users.noreply.github.com
dovydenk@amazon.com
62 shared files
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
packages/cdk/lib/stacks/nested/batch-stack.ts
5.
93286759+aws-genomics-automation@users.noreply.github.com
mrschre@amazon.com
44 shared files
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
examples/gatk-best-practices-project-miniwdl/README.md
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
site/package-lock.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
site/content/en/docs/Concepts/workflows.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
examples/gatk-best-practices-project/README.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
site/content/en/docs/Getting started/installation.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
packages/cli/internal/pkg/cli/spec/project_schema.json
site/themes/docsy
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
site/content/en/docs/Workflow engines/miniwdl.md
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
examples/nf-core-project/README.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
site/content/en/docs/Concepts/contexts.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cdk/package-lock.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
6.
braidn@amazon.com
elliotsm@amazon.com
40 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/aws/cdk/new_client.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
7.
braidn@amazon.com
atahlil@amazon.com
40 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cli/internal/pkg/storage/interfaces.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/manager.go
8.
braidn@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
40 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
.github/workflows/ci.yml
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
CHANGELOG.md
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/manager.go
9.
atahlil@amazon.com
mrschre@amazon.com
37 shared files
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
examples/gatk-best-practices-project-miniwdl/README.md
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
site/package-lock.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
site/content/en/docs/Getting started/installation.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
site/themes/docsy
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
site/content/en/docs/Workflow engines/miniwdl.md
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
site/content/en/docs/Concepts/contexts.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cdk/package-lock.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl
10.
tneely@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
35 shared files
examples/nf-core-project/agc-project.yaml
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
site/content/en/_index.html
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/constants.ts
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cli/internal/pkg/cli/context/context_environment.go
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cdk/lib/constructs/batch.ts
CHANGELOG.md
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
scripts/package-release.sh
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/lib/env/index.ts
packages/cdk/apps/core/app.ts
packages/cdk/lib/util/instance-types.ts
packages/cdk/lib/constructs/engines/engine.ts
.github/workflows/github-pages.yaml
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cdk/lib/env/context-app-parameters.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
11.
7497012+a-li@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
34 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
CHANGELOG.md
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
scripts/package-release.sh
packages/cli/Makefile
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
site/content/en/docs/Tutorials/walkthrough.md
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/cli/types/context.go
12.
tayneely@amazon.com
elliotsm@amazon.com
33 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/new_client.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
13.
7497012+a-li@users.noreply.github.com
braidn@amazon.com
33 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
CHANGELOG.md
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/internal/pkg/osutils/utils_test.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
README.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
14.
93286759+aws-genomics-automation@users.noreply.github.com
elliotsm@amazon.com
31 shared files
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/constants.ts
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cwl/get_logs.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/manager.go
15.
tayneely@amazon.com
atahlil@amazon.com
27 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
16.
7497012+a-li@users.noreply.github.com
atahlil@amazon.com
25 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/Makefile
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
17.
tayneely@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
24 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
.github/workflows/ci.yml
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
CHANGELOG.md
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
18.
tneely@users.noreply.github.com
braidn@amazon.com
22 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cdk/npm-shrinkwrap.json
CHANGELOG.md
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
version.json
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
19.
7497012+a-li@users.noreply.github.com
tayneely@amazon.com
16 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
CHANGELOG.md
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/config/config_client.go
20.
braidn@amazon.com
93626953+anisatahlil@users.noreply.github.com
16 shared files
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/config/config_client.go
21.
tayneely@amazon.com
93626953+anisatahlil@users.noreply.github.com
16 shared files
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/config/config_client.go
22.
93626953+anisatahlil@users.noreply.github.com
atahlil@amazon.com
16 shared files
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/config/config_client.go
23.
braidn@amazon.com
dovydenk@amazon.com
15 shared files
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
24.
2242982+ghawk1ns@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
14 shared files
site/content/en/docs/Concepts/accounts.md
packages/cli/internal/pkg/cli/logs_workflow.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/cli/format/format.go
site/themes/docsy
site/content/en/docs/Getting started/setup.md
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
25.
atahlil@amazon.com
elliotsm@amazon.com
14 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/manager.go
26.
tneely@users.noreply.github.com
tayneely@amazon.com
14 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
CHANGELOG.md
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
27.
waliag87@gmail.com
gwalia@amazon.com
13 shared files
packages/engines/snakemake/Dockerfile
packages/engines/new-engine-template/Dockerfile
packages/engines/new-engine-template/buildspec.yml
packages/engines/snakemake/LICENSE
packages/engines/snakemake/THIRD-PARTY
packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh
packages/engines/snakemake/.gitignore
packages/engines/snakemake/buildspec.yml
packages/engines/new-engine-template/THIRD-PARTY
packages/engines/new-engine-template/.aws.sh
packages/engines/snakemake/README.md
packages/engines/new-engine-template/DEVELOPMENT.MD
packages/engines/snakemake/snakemake.aws.sh
28.
braidn@amazon.com
2242982+ghawk1ns@users.noreply.github.com
13 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/new_client.go
29.
tayneely@amazon.com
2242982+ghawk1ns@users.noreply.github.com
13 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/new_client.go
30.
tneely@users.noreply.github.com
atahlil@amazon.com
13 shared files
packages/cdk/package.json
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/constants.ts
CHANGELOG.md
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
31.
tneely@users.noreply.github.com
dovydenk@amazon.com
13 shared files
packages/cdk/package.json
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/constants.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
32.
elliotsm@amazon.com
7497012+a-li@users.noreply.github.com
13 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/osutils/utils.go
site/content/en/docs/Tutorials/walkthrough.md
33.
tneely@users.noreply.github.com
7497012+a-li@users.noreply.github.com
11 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
CHANGELOG.md
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
scripts/package-release.sh
packages/cli/Makefile
packages/cdk/lib/util/index.ts
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/lib/constructs/engines/engine.ts
34.
atahlil@amazon.com
2242982+ghawk1ns@users.noreply.github.com
10 shared files
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packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/cli/workflow/workflow_status.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/cli/format/format.go
site/themes/docsy
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
35.
braidn@amazon.com
30308260+abassyiouni@users.noreply.github.com
10 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/types/engine-options.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
36.
tayneely@amazon.com
30308260+abassyiouni@users.noreply.github.com
10 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/types/engine-options.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
37.
7497012+a-li@users.noreply.github.com
dovydenk@amazon.com
10 shared files
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
38.
tneely@users.noreply.github.com
elliotsm@amazon.com
9 shared files
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
39.
tneely@users.noreply.github.com
30308260+abassyiouni@users.noreply.github.com
8 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/types/engine-options.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
40.
7497012+a-li@users.noreply.github.com
dtzeng@users.noreply.github.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
41.
7497012+a-li@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
42.
dtzeng@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
43.
IllyaYalovyy@users.noreply.github.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/cli/config/config_client.go
44.
IllyaYalovyy@users.noreply.github.com
tayneely@amazon.com
7 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/cli/config/config_client.go
45.
dtzeng@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
7 shared files
packages/cli/go.mod
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
46.
2242982+ghawk1ns@users.noreply.github.com
elliotsm@amazon.com
7 shared files
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/new_client.go
47.
dtzeng@users.noreply.github.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
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packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/cmd/application/main.go
48.
dtzeng@amazon.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/cmd/application/main.go
49.
IllyaYalovyy@users.noreply.github.com
elliotsm@amazon.com
6 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
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50.
93286759+aws-genomics-automation@users.noreply.github.com
30308260+abassyiouni@users.noreply.github.com
6 shared files
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packages/cdk/lib/roles/cromwell-engine-role.ts
scripts/context-deploy-benchmark/cromwell/agc-project.yaml
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/context-stack.ts
scripts/context-deploy-benchmark/nextflow/agc-project.yaml
51.
dtzeng@users.noreply.github.com
tayneely@amazon.com
6 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/cmd/application/main.go
52.
dtzeng@amazon.com
tayneely@amazon.com
6 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/cmd/application/main.go
53.
7497012+a-li@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
5 shared files
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
54.
IllyaYalovyy@users.noreply.github.com
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5 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/cli/config/config_client.go
55.
dtzeng@amazon.com
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5 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
56.
chuanyut@amazon.com
evanyui@hotmail.com
4 shared files
packages/wes_api/client/client.go
packages/cdk/npm-shrinkwrap.json
packages/wes_api/client/api_workflow_execution_service.go
packages/cdk/lib/util/instance-types.ts
57.
7497012+a-li@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
4 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_client.go
58.
IllyaYalovyy@users.noreply.github.com
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4 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/cli/config/config_client.go
59.
braidn@amazon.com
mrschre@amazon.com
4 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/spec/io_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/spec/project_schema.json
60.
7497012+a-li@users.noreply.github.com
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4 shared files
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packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/config/config_client.go
61.
dtzeng@users.noreply.github.com
atahlil@amazon.com
4 shared files
packages/cli/internal/pkg/cli/flag.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
62.
dtzeng@amazon.com
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4 shared files
packages/cli/internal/pkg/cli/flag.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
63.
93626953+anisatahlil@users.noreply.github.com
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4 shared files
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packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/config/config_client.go
64.
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4 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
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packages/cli/internal/pkg/cli/context/manager.go
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65.
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4 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
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66.
dovydenk@amazon.com
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4 shared files
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
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67.
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4 shared files
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
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68.
dovydenko.andrej@gmail.com
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3 shared files
packages/cli/go.mod
Makefile
packages/cli/go.sum
69.
mrschre@amazon.com
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3 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
site/content/en/docs/Getting started/installation.md
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70.
dtzeng@users.noreply.github.com
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2 shared files
packages/cli/go.mod
packages/cli/go.sum
71.
tneely@users.noreply.github.com
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2 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
site/content/en/docs/Getting started/installation.md
72.
elliotsm@amazon.com
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2 shared files
packages/cdk/lib/constants.ts
packages/cdk/lib/util/index.ts
73.
elliotsm@amazon.com
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2 shared files
site/content/en/docs/Concepts/workflows.md
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74.
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75.
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76.
dtzeng@amazon.com
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2 shared files
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77.
chuanyut@amazon.com
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2 shared files
packages/cdk/npm-shrinkwrap.json
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78.
evanyui@hotmail.com
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2 shared files
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79.
braidn@amazon.com
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2 shared files
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82.
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84.
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2 shared files
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85.
2242982+ghawk1ns@users.noreply.github.com
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86.
2242982+ghawk1ns@users.noreply.github.com
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2 shared files
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/lib/policy-statements.ts
87.
atahlil@amazon.com
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2 shared files
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extras/agc-minimal-permissions/lib/policy-statements.ts
88.
93286759+aws-genomics-automation@users.noreply.github.com
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extras/agc-minimal-permissions/lib/policy-statements.ts
89.
dtzeng@users.noreply.github.com
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2 shared files
site/content/en/docs/Getting started/installation.md
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90.
dtzeng@amazon.com
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2 shared files
site/content/en/docs/Getting started/installation.md
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91.
2242982+ghawk1ns@users.noreply.github.com
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92.
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packages/cli/internal/pkg/aws/cdk/progress.go
93.
dtzeng@amazon.com
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1 shared file
packages/cli/internal/pkg/aws/cdk/progress.go
94.
elliotsm@amazon.com
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1 shared file
packages/cdk/npm-shrinkwrap.json
95.
elliotsm@amazon.com
evanyui@hotmail.com
1 shared file
packages/cdk/npm-shrinkwrap.json
96.
chuanyut@amazon.com
braidn@amazon.com
1 shared file
packages/cdk/npm-shrinkwrap.json
97.
evanyui@hotmail.com
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1 shared file
packages/cdk/npm-shrinkwrap.json
98.
2242982+ghawk1ns@users.noreply.github.com
dtzeng@users.noreply.github.com
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2242982+ghawk1ns@users.noreply.github.com
dtzeng@amazon.com
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CHANGELOG.md
| Contributor 1 | Contributor 2 | # shared files | |
|---|---|---|---|
| 1. | 93286759+aws-genomics-automation@users.noreply.github.com | atahlil@amazon.com |
119 shared files
site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cli/internal/pkg/cli/logs_workflow.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cdk/lib/wes_adapter/rest_api/models/service_info.py examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py .github/workflows/ci.yml examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py site/package-lock.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constants.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/rest_api/util.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json CHANGELOG.md packages/cdk/lib/wes_adapter/rest_api/models/state.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json site/content/en/docs/Getting started/installation.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cdk/lib/wes_adapter/rest_api/__init__.py examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json packages/cdk/lib/wes_adapter/init-local-server.sh site/themes/docsy examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py site/content/en/docs/Workflow engines/miniwdl.md packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts ... |
| 2. | atahlil@amazon.com | dovydenk@amazon.com |
64 shared files
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/package.json packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/.eslintrc.js packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl packages/cdk/lib/stacks/nested/batch-stack.ts |
| 3. | braidn@amazon.com | tayneely@amazon.com |
64 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go CHANGELOG.md packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/cli/context/util.go packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/new_client.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/aws/cdk/clear_context.go |
| 4. | 93286759+aws-genomics-automation@users.noreply.github.com | dovydenk@amazon.com |
62 shared files
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl packages/cdk/lib/stacks/nested/batch-stack.ts |
| 5. | 93286759+aws-genomics-automation@users.noreply.github.com | mrschre@amazon.com |
44 shared files
site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl site/package-lock.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json site/content/en/docs/Concepts/workflows.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json site/content/en/docs/Getting started/installation.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl site/content/en/docs/Workflow engines/miniwdl.md examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/nf-core-project/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl |
| 6. | braidn@amazon.com | elliotsm@amazon.com |
40 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/osutils/utils.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/aws/cdk/new_client.go packages/cli/internal/pkg/aws/cdk/clear_context.go |
| 7. | braidn@amazon.com | atahlil@amazon.com |
40 shared files
packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cdk/lib/wes_adapter/requirements.txt packages/cli/internal/pkg/storage/interfaces.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/manager.go |
| 8. | braidn@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
40 shared files
packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go .github/workflows/ci.yml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go CHANGELOG.md packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/manager.go |
| 9. | atahlil@amazon.com | mrschre@amazon.com |
37 shared files
site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl site/package-lock.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json site/content/en/docs/Getting started/installation.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json site/themes/docsy examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl site/content/en/docs/Workflow engines/miniwdl.md examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl |
| 10. | tneely@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
35 shared files
examples/nf-core-project/agc-project.yaml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts site/content/en/_index.html packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/constants.ts packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cdk/lib/roles/policies/batch-policies.ts packages/cli/internal/pkg/cli/context/context_environment.go packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cdk/lib/constructs/batch.ts CHANGELOG.md packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go scripts/package-release.sh packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/env/index.ts packages/cdk/apps/core/app.ts packages/cdk/lib/util/instance-types.ts packages/cdk/lib/constructs/engines/engine.ts .github/workflows/github-pages.yaml packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cdk/lib/env/context-app-parameters.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 11. | 7497012+a-li@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
34 shared files
packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go CHANGELOG.md packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go scripts/package-release.sh packages/cli/Makefile packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context_describe_test.go version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py site/content/en/docs/Tutorials/walkthrough.md examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/cli/types/context.go |
| 12. | tayneely@amazon.com | elliotsm@amazon.com |
33 shared files
packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/new_client.go packages/cli/internal/pkg/aws/cdk/clear_context.go |
| 13. | 7497012+a-li@users.noreply.github.com | braidn@amazon.com |
33 shared files
packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go CHANGELOG.md packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/osutils/utils.go packages/cli/internal/pkg/osutils/utils_test.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts README.md packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py |
| 14. | 93286759+aws-genomics-automation@users.noreply.github.com | elliotsm@amazon.com |
31 shared files
packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/constants.ts site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cwl/get_logs.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/manager.go |
| 15. | tayneely@amazon.com | atahlil@amazon.com |
27 shared files
packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go |
| 16. | 7497012+a-li@users.noreply.github.com | atahlil@amazon.com |
25 shared files
packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/Makefile packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py |
| 17. | tayneely@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
24 shared files
packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go .github/workflows/ci.yml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go CHANGELOG.md packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go |
| 18. | tneely@users.noreply.github.com | braidn@amazon.com |
22 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cdk/npm-shrinkwrap.json CHANGELOG.md packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md version.json packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/stacks/core-stack.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/stacks/engines/batch-construct.ts |
| 19. | 7497012+a-li@users.noreply.github.com | tayneely@amazon.com |
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packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go CHANGELOG.md packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/config/config_client.go |
| 20. | braidn@amazon.com | 93626953+anisatahlil@users.noreply.github.com |
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packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 21. | tayneely@amazon.com | 93626953+anisatahlil@users.noreply.github.com |
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packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 22. | 93626953+anisatahlil@users.noreply.github.com | atahlil@amazon.com |
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packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 23. | braidn@amazon.com | dovydenk@amazon.com |
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packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py |
| 24. | 2242982+ghawk1ns@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
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site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/logs_workflow.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/format/format.go site/themes/docsy site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts |
| 25. | atahlil@amazon.com | elliotsm@amazon.com |
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packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/manager.go |
| 26. | tneely@users.noreply.github.com | tayneely@amazon.com |
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packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context/manager_deploy.go CHANGELOG.md packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/stacks/engines/batch-construct.ts |
| 27. | waliag87@gmail.com | gwalia@amazon.com |
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packages/engines/snakemake/Dockerfile packages/engines/new-engine-template/Dockerfile packages/engines/new-engine-template/buildspec.yml packages/engines/snakemake/LICENSE packages/engines/snakemake/THIRD-PARTY packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh packages/engines/snakemake/.gitignore packages/engines/snakemake/buildspec.yml packages/engines/new-engine-template/THIRD-PARTY packages/engines/new-engine-template/ packages/engines/snakemake/README.md packages/engines/new-engine-template/DEVELOPMENT.MD packages/engines/snakemake/snakemake.aws.sh |
| 28. | braidn@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 29. | tayneely@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/format/format.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 30. | tneely@users.noreply.github.com | atahlil@amazon.com |
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packages/cdk/package.json packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constants.ts CHANGELOG.md packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/roles/cromwell-adapter-role.ts |
| 31. | tneely@users.noreply.github.com | dovydenk@amazon.com |
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packages/cdk/package.json packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constants.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts |
| 32. | elliotsm@amazon.com | 7497012+a-li@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/osutils/utils.go site/content/en/docs/Tutorials/walkthrough.md |
| 33. | tneely@users.noreply.github.com | 7497012+a-li@users.noreply.github.com |
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packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts CHANGELOG.md packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go scripts/package-release.sh packages/cli/Makefile packages/cdk/lib/util/index.ts site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/constructs/engines/engine.ts |
| 34. | atahlil@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/cli/workflow/workflow_status.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/format/format.go site/themes/docsy packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts |
| 35. | braidn@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
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packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/index.ts packages/cdk/lib/types/engine-options.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/stacks/engines/batch-construct.ts |
| 36. | tayneely@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
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packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/index.ts packages/cdk/lib/types/engine-options.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/stacks/engines/batch-construct.ts |
| 37. | 7497012+a-li@users.noreply.github.com | dovydenk@amazon.com |
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packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py |
| 38. | tneely@users.noreply.github.com | elliotsm@amazon.com |
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packages/cdk/lib/constants.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context/manager.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context/manager_deploy_test.go |
| 39. | tneely@users.noreply.github.com | 30308260+abassyiouni@users.noreply.github.com |
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packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/types/engine-options.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/stacks/engines/batch-construct.ts |
| 40. | 7497012+a-li@users.noreply.github.com | dtzeng@users.noreply.github.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 41. | 7497012+a-li@users.noreply.github.com | dtzeng@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 42. | dtzeng@users.noreply.github.com | dtzeng@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 43. | IllyaYalovyy@users.noreply.github.com | braidn@amazon.com |
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packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 44. | IllyaYalovyy@users.noreply.github.com | tayneely@amazon.com |
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packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 45. | dtzeng@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
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packages/cli/go.mod packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 46. | 2242982+ghawk1ns@users.noreply.github.com | elliotsm@amazon.com |
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packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 47. | dtzeng@users.noreply.github.com | braidn@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/cmd/application/main.go |
| 48. | dtzeng@amazon.com | braidn@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/cmd/application/main.go |
| 49. | IllyaYalovyy@users.noreply.github.com | elliotsm@amazon.com |
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packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go |
| 50. | 93286759+aws-genomics-automation@users.noreply.github.com | 30308260+abassyiouni@users.noreply.github.com |
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scripts/context-deploy-benchmark/context-benchmark.sh packages/cdk/lib/roles/cromwell-engine-role.ts scripts/context-deploy-benchmark/cromwell/agc-project.yaml packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/context-stack.ts scripts/context-deploy-benchmark/nextflow/agc-project.yaml |
| 51. | dtzeng@users.noreply.github.com | tayneely@amazon.com |
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| 52. | dtzeng@amazon.com | tayneely@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/cmd/application/main.go |
| 53. | 7497012+a-li@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/logs_workflow_test.go |
| 54. | IllyaYalovyy@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 55. | dtzeng@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 56. | chuanyut@amazon.com | evanyui@hotmail.com |
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packages/wes_api/client/client.go packages/cdk/npm-shrinkwrap.json packages/wes_api/client/api_workflow_execution_service.go packages/cdk/lib/util/instance-types.ts |
| 57. | 7497012+a-li@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
4 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 58. | IllyaYalovyy@users.noreply.github.com | atahlil@amazon.com |
4 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/cli/config/config_client.go |
| 59. | braidn@amazon.com | mrschre@amazon.com |
4 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/spec/io_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/spec/project_schema.json |
| 60. | 7497012+a-li@users.noreply.github.com | 93626953+anisatahlil@users.noreply.github.com |
4 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/config/config_client.go |
| 61. | dtzeng@users.noreply.github.com | atahlil@amazon.com |
4 shared files
packages/cli/internal/pkg/cli/flag.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 62. | dtzeng@amazon.com | atahlil@amazon.com |
4 shared files
packages/cli/internal/pkg/cli/flag.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 63. | 93626953+anisatahlil@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
4 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/config/config_client.go |
| 64. | dtzeng@users.noreply.github.com | elliotsm@amazon.com |
4 shared files
packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go |
| 65. | dtzeng@amazon.com | elliotsm@amazon.com |
4 shared files
packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_test.go |
| 66. | dovydenk@amazon.com | tayneely@amazon.com |
4 shared files
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts |
| 67. | dovydenk@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
4 shared files
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts |
| 68. | dovydenko.andrej@gmail.com | 93286759+aws-genomics-automation@users.noreply.github.com |
3 shared files
packages/cli/go.mod Makefile packages/cli/go.sum |
| 69. | mrschre@amazon.com | 7497012+a-li@users.noreply.github.com |
3 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts site/content/en/docs/Getting started/installation.md examples/gatk-best-practices-project-miniwdl/agc-project.yaml |
| 70. | dtzeng@users.noreply.github.com | dovydenko.andrej@gmail.com |
2 shared files
packages/cli/go.mod packages/cli/go.sum |
| 71. | tneely@users.noreply.github.com | mrschre@amazon.com |
2 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts site/content/en/docs/Getting started/installation.md |
| 72. | elliotsm@amazon.com | dovydenk@amazon.com |
2 shared files
packages/cdk/lib/constants.ts packages/cdk/lib/util/index.ts |
| 73. | elliotsm@amazon.com | mrschre@amazon.com |
2 shared files
site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/spec/io_test.go |
| 74. | elliotsm@amazon.com | 93626953+anisatahlil@users.noreply.github.com |
2 shared files
packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go |
| 75. | dtzeng@users.noreply.github.com | 93626953+anisatahlil@users.noreply.github.com |
2 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/cmd/application/main.go |
| 76. | dtzeng@amazon.com | 93626953+anisatahlil@users.noreply.github.com |
2 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/cmd/application/main.go |
| 77. | chuanyut@amazon.com | tneely@users.noreply.github.com |
2 shared files
packages/cdk/npm-shrinkwrap.json packages/cdk/lib/util/instance-types.ts |
| 78. | evanyui@hotmail.com | tneely@users.noreply.github.com |
2 shared files
packages/cdk/npm-shrinkwrap.json packages/cdk/lib/util/instance-types.ts |
| 79. | braidn@amazon.com | dzl@88665a545034.ant.amazon.com |
2 shared files
CHANGELOG.md version.json |
| 80. | 7497012+a-li@users.noreply.github.com | dzl@88665a545034.ant.amazon.com |
2 shared files
CHANGELOG.md version.json |
| 81. | dzl@88665a545034.ant.amazon.com | atahlil@amazon.com |
2 shared files
CHANGELOG.md version.json |
| 82. | dzl@88665a545034.ant.amazon.com | tneely@users.noreply.github.com |
2 shared files
CHANGELOG.md version.json |
| 83. | dzl@88665a545034.ant.amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
2 shared files
CHANGELOG.md version.json |
| 84. | tayneely@amazon.com | mrschre@amazon.com |
2 shared files
packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/spec/project_schema.json |
| 85. | 2242982+ghawk1ns@users.noreply.github.com | tneely@users.noreply.github.com |
2 shared files
packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/account_activate_test.go |
| 86. | 2242982+ghawk1ns@users.noreply.github.com | wleepang@gmail.com |
2 shared files
extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/lib/policy-statements.ts |
| 87. | atahlil@amazon.com | wleepang@gmail.com |
2 shared files
extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/lib/policy-statements.ts |
| 88. | 93286759+aws-genomics-automation@users.noreply.github.com | wleepang@gmail.com |
2 shared files
extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/lib/policy-statements.ts |
| 89. | dtzeng@users.noreply.github.com | tneely@users.noreply.github.com |
2 shared files
site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go |
| 90. | dtzeng@amazon.com | tneely@users.noreply.github.com |
2 shared files
site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go |
| 91. | 2242982+ghawk1ns@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
1 shared file
packages/cli/internal/pkg/aws/cdk/deploy_app.go |
| 92. | dtzeng@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
1 shared file
packages/cli/internal/pkg/aws/cdk/progress.go |
| 93. | dtzeng@amazon.com | IllyaYalovyy@users.noreply.github.com |
1 shared file
packages/cli/internal/pkg/aws/cdk/progress.go |
| 94. | elliotsm@amazon.com | chuanyut@amazon.com |
1 shared file
packages/cdk/npm-shrinkwrap.json |
| 95. | elliotsm@amazon.com | evanyui@hotmail.com |
1 shared file
packages/cdk/npm-shrinkwrap.json |
| 96. | chuanyut@amazon.com | braidn@amazon.com |
1 shared file
packages/cdk/npm-shrinkwrap.json |
| 97. | evanyui@hotmail.com | braidn@amazon.com |
1 shared file
packages/cdk/npm-shrinkwrap.json |
| 98. | 2242982+ghawk1ns@users.noreply.github.com | dtzeng@users.noreply.github.com |
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go |
| 99. | 2242982+ghawk1ns@users.noreply.github.com | dtzeng@amazon.com |
1 shared file
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go |
| 100. | tayneely@amazon.com | dzl@88665a545034.ant.amazon.com |
1 shared file
CHANGELOG.md |
34 contributors (230 commits):
| # | Contributor |
First Commit |
Latest Commit |
Commits Count |
|---|---|---|---|---|
| 1. | tneely@users.noreply.github.com | 2021-09-27 | 2022-01-10 | 24 (10%) |
| 2. | mrschre@amazon.com | 2021-09-28 | 2021-12-13 | 24 (10%) |
| 3. | elliotsm@amazon.com | 2021-09-28 | 2022-01-25 | 22 (9%) |
| 4. | atahlil@amazon.com | 2021-11-09 | 2021-11-12 | 21 (9%) |
| 5. | 7497012+a-li@users.noreply.github.com | 2021-09-29 | 2022-01-26 | 19 (8%) |
| 6. | IllyaYalovyy@users.noreply.github.com | 2021-09-25 | 2022-01-05 | 16 (6%) |
| 7. | wleepang@gmail.com | 2021-09-27 | 2021-11-10 | 14 (6%) |
| 8. | 2242982+ghawk1ns@users.noreply.github.com | 2021-09-07 | 2022-01-28 | 13 (5%) |
| 9. | braidn@amazon.com | 2021-11-01 | 2021-12-17 | 13 (5%) |
| 10. | 30308260+abassyiouni@users.noreply.github.com | 2021-09-30 | 2022-01-05 | 9 (3%) |
| 11. | markjschreiber@gmail.com | 2021-09-22 | 2021-09-27 | 6 (2%) |
| 12. | waliag87@gmail.com | 2022-01-04 | 2022-01-12 | 5 (2%) |
| 13. | gwalia@amazon.com | 2021-12-30 | 2022-01-07 | 5 (2%) |
| 14. | dovydenk@amazon.com | 2021-09-28 | 2021-11-24 | 5 (2%) |
| 15. | 93626953+anisatahlil@users.noreply.github.com | 2021-11-15 | 2021-12-07 | 3 (1%) |
| 16. | andrewjdresser@gmail.com | 2021-10-06 | 2021-10-13 | 3 (1%) |
| 17. | 49699333+dependabot[bot]@users.noreply.github.com | 2021-09-29 | 2021-09-29 | 3 (1%) |
| 18. | dtzeng@users.noreply.github.com | 2022-01-21 | 2022-01-28 | 2 (<1%) |
| 19. | dovydenko.andrej@gmail.com | 2021-12-10 | 2021-12-11 | 2 (<1%) |
| 20. | dzl@88665a545034.ant.amazon.com | 2021-11-15 | 2021-11-17 | 2 (<1%) |
| 21. | seaam@amazon.com | 2021-10-13 | 2021-10-13 | 2 (<1%) |
| 22. | mr.fermion@gmail.com | 2021-09-30 | 2021-09-30 | 2 (<1%) |
| 23. | midaisuk@gmail.com | 2021-09-27 | 2021-09-27 | 2 (<1%) |
| 24. | yalovyyi@amazon.com | 2021-09-25 | 2021-09-27 | 2 (<1%) |
| 25. | guyhawki@amazon.com | 2021-09-01 | 2021-09-23 | 2 (<1%) |
| 26. | dtzeng@amazon.com | 2022-01-20 | 2022-01-20 | 1 (<1%) |
| 27. | chuanyut@amazon.com | 2022-01-13 | 2022-01-13 | 1 (<1%) |
| 28. | evanyui@hotmail.com | 2022-01-11 | 2022-01-11 | 1 (<1%) |
| 29. | anovak@soe.ucsc.edu | 2021-12-21 | 2021-12-21 | 1 (<1%) |
| 30. | tayneely@amazon.com | 2021-11-17 | 2021-11-17 | 1 (<1%) |
| 31. | awlucattini@icloud.com | 2021-11-16 | 2021-11-16 | 1 (<1%) |
| 32. | 93286759+aws-genomics-automation@users.noreply.github.com | 2021-11-11 | 2021-11-11 | 1 (<1%) |
| 33. | aaron.j.friedman@gmail.com | 2021-09-28 | 2021-09-28 | 1 (<1%) |
| 34. | badger@gitter.im | 2021-09-27 | 2021-09-27 | 1 (<1%) |
Contributor Dependencies
A contributor dependency is detected if two contributors have changed the same files in the past 180 days.
C-median: 15.0
A half of the contributors has more than 15.0 connections, and a half has less than this number.
C-mean: 16.1
An average number of connections a contributor has with other contributors.
C-index: 16.0
There are 16.0 contributors with 16.0 or more connections.
Most Connected Contributors
| Contributor | # connections | # commits | |
|---|---|---|---|
| 1. | 2242982+ghawk1ns@users.noreply.github.com | 30 | 13 |
| 2. | guyhawki@amazon.com | 30 | 2 |
| 3. | 93286759+aws-genomics-automation@users.noreply.github.com | 29 | 1 |
| 4. | IllyaYalovyy@users.noreply.github.com | 28 | 16 |
| 5. | tneely@users.noreply.github.com | 26 | 24 |
| 6. | mrschre@amazon.com | 26 | 24 |
| 7. | braidn@amazon.com | 25 | 13 |
| 8. | atahlil@amazon.com | 24 | 21 |
| 9. | elliotsm@amazon.com | 23 | 22 |
| 10. | 7497012+a-li@users.noreply.github.com | 23 | 19 |
| 11. | wleepang@gmail.com | 22 | 14 |
| 12. | yalovyyi@amazon.com | 22 | 2 |
| 13. | tayneely@amazon.com | 21 | 1 |
| 14. | dtzeng@users.noreply.github.com | 19 | 2 |
| 15. | dtzeng@amazon.com | 18 | 1 |
| 16. | midaisuk@gmail.com | 17 | 2 |
| 17. | 30308260+abassyiouni@users.noreply.github.com | 16 | 9 |
| 18. | 93626953+anisatahlil@users.noreply.github.com | 14 | 3 |
| 19. | seaam@amazon.com | 14 | 2 |
| 20. | andrewjdresser@gmail.com | 13 | 3 |
| 21. | dovydenk@amazon.com | 12 | 5 |
| 22. | markjschreiber@gmail.com | 11 | 6 |
| 23. | anovak@soe.ucsc.edu | 10 | 1 |
| 24. | awlucattini@icloud.com | 10 | 1 |
| 25. | badger@gitter.im | 10 | 1 |
| 26. | aaron.j.friedman@gmail.com | 9 | 1 |
| 27. | dovydenko.andrej@gmail.com | 8 | 2 |
| 28. | chuanyut@amazon.com | 7 | 1 |
| 29. | evanyui@hotmail.com | 7 | 1 |
| 30. | waliag87@gmail.com | 6 | 5 |
| 31. | 49699333+dependabot[bot]@users.noreply.github.com | 6 | 3 |
| 32. | dzl@88665a545034.ant.amazon.com | 6 | 2 |
| 33. | mr.fermion@gmail.com | 5 | 2 |
| 34. | gwalia@amazon.com | 3 | 5 |
Contributor Dependencies via Shared Files
show graph...
The number on lines shows the number of same files that both persons changed in past 180 days.
- open 3D force graph
Contributor 1
Contributor 2
# shared files
1.
2242982+ghawk1ns@users.noreply.github.com
guyhawki@amazon.com
455 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/content/en/docs/Concepts/accounts.md
packages/cli/internal/pkg/cli/workflow/workflow_details.go
packages/common/aws/s3/interface.go
site/config.toml
packages/common/aws/sts/get_account.go
packages/wes_api/client/model_error_response.go
examples/gatk-best-practices-project/workflow-diagrams/cram-to-bam.dot.png
examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/options.json
packages/common/aws/cfn/get_stack_status.go
packages/common/aws/cfn/get_stack_exports.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/wes/interface.go
packages/cli/TESTING.md
packages/common/aws/ecr/ecr_client_test.go
packages/cli/internal/pkg/constants/product.go
packages/common/aws/ddb/write_workflow_instance.go
packages/cli/internal/pkg/wes/option/workflow_attachment.go
packages/common/aws/cdk/append_context_arguments.go
examples/gatk-best-practices-project/gatk4-germline-snps-indels/options.json
site/content/en/docs/Concepts/workflows.md
packages/common/aws/cwl/client.go
packages/cli/internal/pkg/cli/context_describe.go
.go-version
packages/cli/internal/pkg/cli/spec/data.go
packages/wes_api/client/.travis.yml
examples/gatk-best-practices-project/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
packages/cli/internal/pkg/storage/project_client_test.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
examples/gatk-best-practices-project/workflow-diagrams/gatk4-basic-joint-genotyping.dot.png
packages/cli/internal/pkg/cli/context/context_environment.go
packages/common/aws/cdk/deploy_app.go
examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cli/internal/pkg/cli/logs_adapter.go
packages/common/Makefile
packages/common/aws/cwl/stream_logs_test.go
site/LICENSE
packages/hello.go
packages/common/aws/ddb/list_workflow_instances_by_name.go
packages/wes_api/client/response.go
packages/cli/internal/pkg/term/color/color_test.go
packages/cli/LICENSE
site/content/en/community/_index.md
packages/wes_api/client/model_workflow_type_version.go
packages/common/aws/cwl/stream_logs.go
packages/cdk/apps/context/app.ts
packages/common/aws/cdk/execute_cdk.go
packages/common/aws/cdk/parse_output_test.go
packages/cli/Makefile
extras/agc-minimal-permissions/.npmignore
packages/cdk/lib/types/compute-type.ts
examples/gatk-best-practices-project/workflow-diagrams/gatk4-data-processing.dot
packages/wes_api/client/api/openapi.yaml
site/static/favicons/android-chrome-512x512.png
packages/common/logging/prefix.go
packages/wes_api/client/api_workflow_execution_service.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/spec/workflow.go
site/content/en/docs/Best practices/controllingcosts.md
packages/cli/internal/pkg/wes/Client.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/common/aws/ssm/client.go
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/gatk-best-practices-project/workflow-diagrams/gatk4-germline-snps-indels.dot.png
packages/common/aws/util/time.go
site/content/en/docs/Concepts/namespaces.md
buildspec.yml
examples/demo-wdl-project/workflows/read/read.wdl
site/layouts/404.html
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/.dockerignore
packages/cli/internal/pkg/cli/workflow/workflow_list_test.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
examples/demo-wdl-project/workflows/haplotype/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
packages/cli/internal/pkg/cli/project_test.go
examples/gatk-best-practices-project/workflow-diagrams/paired-fastq-to-unmapped-bam.dot.png
examples/demo-nextflow-project/agc-project.yaml
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
packages/cli/internal/pkg/cli/context/interface.go
extras/agc-minimal-permissions/cdk.json
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/common/aws/ecr/Interface.go
packages/wes_api/client/sigv4_client.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
README.md
packages/cli/internal/pkg/cli/context_test.go
packages/cdk/README.md
packages/common/aws/ddb/list_workflow_instances_by_context.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cdk/lib/constructs/api-proxy.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/common/aws/provider.go
examples/demo-wdl-project/workflows/hello/hello.wdl
packages/common/aws/provider_test.go
packages/common/internal/pkg/mocks/io/mock_interfaces.go
...
2.
tneely@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
122 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/wes/interface.go
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/context/context_environment.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cdk/apps/context/app.ts
packages/cli/Makefile
packages/cli/internal/pkg/wes/Client.go
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
buildspec.yml
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/cli/workflow/workflow_list_test.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cdk/lib/constructs/api-proxy.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
packages/cli/internal/pkg/cli/context/common_test.go
scripts/update-tags.sh
packages/cli/internal/pkg/cli/context.go
packages/cli/cmd/application/template/template.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
.gitignore
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/context/manager_status_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/cli/context_status_test.go
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/cmd/application/description.go
packages/cdk/lib/env/context-app-parameters.ts
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/project_describe_test.go
packages/cdk/lib/constructs/secure-service.ts
packages/cli/internal/pkg/mocks/wes/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
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examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
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packages/cli/internal/pkg/cli/workflow_describe.go
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site/content/en/docs/Workflow engines/_index.md
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packages/cli/internal/pkg/cli/workflow_output.go
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
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THIRD-PARTY
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site/content/en/docs/Workflow engines/miniwdl.md
examples/demo-wdl-project/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
packages/cdk/lib/roles/nextflow-engine-role.ts
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packages/cdk/lib/stacks/nested/batch-stack.ts
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packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
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examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/project_validate.go
packages/cli/internal/pkg/cli/types/context.go
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
examples/gatk-best-practices-project-miniwdl/README.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
packages/cli/internal/pkg/cli/describe_output_test.go
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cli/internal/pkg/cli/context/manager_list_test.go
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
examples/nf-core-project/README.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
site/content/en/docs/Concepts/contexts.md
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packages/cdk/package-lock.json
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packages/cli/internal/pkg/mocks/manager/interfaces.go
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packages/cli/internal/pkg/cli/context_deploy_test.go
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examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
site/content/en/docs/Concepts/projects.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
packages/cli/internal/pkg/cli/project.go
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
site/content/en/docs/Getting started/installation.md
examples/nf-core-project/workflows/rnaseq/inputs.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/slices/slice_utils.go
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7.
93286759+aws-genomics-automation@users.noreply.github.com
guyhawki@amazon.com
91 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/content/en/docs/Concepts/accounts.md
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
.go-version
packages/cli/internal/pkg/cli/context/context_environment.go
packages/cli/Makefile
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
buildspec.yml
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
packages/cdk/lib/constants.ts
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
packages/cli/internal/pkg/cli/context/info.go
site/content/en/docs/Getting started/helloworld.md
.gitignore
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cdk/lib/constructs/index.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/cmd/application/description.go
packages/cdk/lib/env/context-app-parameters.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/logs_core.go
extras/agc-minimal-permissions/package-lock.json
scripts/run-dev.sh
packages/cli/internal/pkg/cli/workflow_status.go
site/content/en/_index.html
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/group/group.go
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
extras/agc-minimal-permissions/package.json
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
site/README.md
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/workflows/ci.yml
packages/cdk/lib/constructs/batch.ts
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/cli/project.go
packages/cli/internal/pkg/cli/logs_core_test.go
Makefile
packages/cdk/lib/types/index.ts
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cdk/lib/env/index.ts
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/context/manager_info.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
8.
93286759+aws-genomics-automation@users.noreply.github.com
tneely@users.noreply.github.com
88 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/cli/workflow_describe.go
examples/nf-core-project/agc-project.yaml
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/context_environment.go
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
buildspec.yml
packages/cli/internal/pkg/logging/prefix.go
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/context_list.go
.versionrc
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
CHANGELOG.md
.gitignore
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/cmd/application/description.go
packages/cdk/lib/env/context-app-parameters.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
bump.sh
packages/cli/internal/pkg/cli/logs_core.go
scripts/run-dev.sh
packages/cli/internal/pkg/cli/workflow_status.go
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/group/group.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/project.go
Makefile
packages/cli/internal/pkg/cli/account_activate_test.go
scripts/package-release.sh
packages/cli/internal/pkg/aws/cwl/get_logs.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/lib/env/index.ts
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/cli/context/manager_info.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
9.
elliotsm@amazon.com
tneely@users.noreply.github.com
86 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/aws/s3/bucket_exists.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/aws/ddb/get_workflow_instance_by_id.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cfn/get_stack_status.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_context.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cfn/list_stacks.go
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/aws/s3/upload_file.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/aws/ddb/list_workflows.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/batch/get_jobs.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/aws/sts/get_account.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/aws/ecr/image_listable.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/aws/cfn/get_stack_exports.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_name.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/s3/sync_file.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cfn/delete_stack.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/aws/cwl/get_logs.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/aws/ecr/image_reference.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
packages/cli/internal/pkg/aws/ddb/write_workflow_instance.go
packages/cli/internal/pkg/aws/cdk/new_client.go
10.
elliotsm@amazon.com
2242982+ghawk1ns@users.noreply.github.com
71 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/cli.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/clierror/cli_error.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
packages/cli/internal/pkg/aws/cdk/new_client.go
11.
elliotsm@amazon.com
guyhawki@amazon.com
68 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/cli.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/clierror/cli_error.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
12.
braidn@amazon.com
tayneely@amazon.com
64 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
13.
atahlil@amazon.com
dovydenk@amazon.com
64 shared files
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/package.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/.eslintrc.js
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
14.
93286759+aws-genomics-automation@users.noreply.github.com
dovydenk@amazon.com
64 shared files
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
15.
tneely@users.noreply.github.com
braidn@amazon.com
62 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
16.
2242982+ghawk1ns@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
58 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/storage/project_client_test.go
site/content/en/community/_index.md
packages/cli/Makefile
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
packages/cli/internal/pkg/logging/prefix.go
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
packages/cli/internal/pkg/cli/format/text_test.go
site/README.md
site/content/en/about/_index.html
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
packages/cli/internal/pkg/cli/logs_core_test.go
site/content/en/docs/Concepts/_index.md
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
site/content/en/docs/Best practices/scalingworkloads.md
17.
braidn@amazon.com
2242982+ghawk1ns@users.noreply.github.com
58 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/Makefile
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
scripts/cli/install.sh
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cdk/lib/stacks/nested/nested-engine-stack.ts
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
18.
braidn@amazon.com
guyhawki@amazon.com
55 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/Makefile
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
scripts/cli/install.sh
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cdk/lib/stacks/nested/nested-engine-stack.ts
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
19.
93286759+aws-genomics-automation@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
54 shared files
site/content/en/docs/Concepts/accounts.md
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/version/cache.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/version/replenish_func.go
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/version/cache_test.go
packages/cli/internal/pkg/version/interfaces.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/version/store_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/version/version_check_result.go
packages/cli/internal/pkg/version/store.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
examples/demo-wdl-project/workflows/words/MANIFEST.json
scripts/run-dev.sh
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/version/checker.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/version/replenish_func_test.go
site/README.md
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/version/check_func.go
packages/cli/internal/pkg/version/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/version/info.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/version/checker_test.go
packages/cli/internal/pkg/version/check_func_test.go
examples/demo-wdl-project/workflows/read/main.wdl
20.
IllyaYalovyy@users.noreply.github.com
guyhawki@amazon.com
54 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/storage/project_client_test.go
site/content/en/community/_index.md
packages/cli/Makefile
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
packages/cli/internal/pkg/cli/format/text_test.go
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
packages/cli/internal/pkg/cli/logs_core_test.go
site/content/en/docs/Concepts/_index.md
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
site/content/en/docs/Best practices/scalingworkloads.md
21.
93286759+aws-genomics-automation@users.noreply.github.com
elliotsm@amazon.com
50 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
.github/ISSUE_TEMPLATE/feature_request.md
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
.github/ISSUE_TEMPLATE/bug_report.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/PULL_REQUEST_TEMPLATE.md
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cwl/get_logs.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
22.
braidn@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
48 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
23.
atahlil@amazon.com
mrschre@amazon.com
47 shared files
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
site/content/en/docs/Workflow engines/miniwdl.md
examples/demo-wdl-project/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
site/package-lock.json
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
site/themes/docsy
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
examples/gatk-best-practices-project-miniwdl/README.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
site/content/en/docs/Concepts/contexts.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json
packages/cdk/package-lock.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
site/content/en/docs/Getting started/installation.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
24.
elliotsm@amazon.com
braidn@amazon.com
46 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/aws/cdk/new_client.go
25.
mrschre@amazon.com
2242982+ghawk1ns@users.noreply.github.com
45 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context/info.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_schema.json
site/themes/docsy
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
site/content/en/docs/Concepts/contexts.md
packages/cdk/package-lock.json
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
26.
tneely@users.noreply.github.com
tayneely@amazon.com
44 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
27.
tayneely@amazon.com
2242982+ghawk1ns@users.noreply.github.com
43 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
28.
mrschre@amazon.com
guyhawki@amazon.com
42 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context/info.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
site/content/en/docs/Concepts/contexts.md
packages/cdk/package-lock.json
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
29.
atahlil@amazon.com
2242982+ghawk1ns@users.noreply.github.com
41 shared files
packages/cli/Makefile
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
site/package-lock.json
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
site/themes/docsy
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cdk/.eslintrc.js
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/configure_describe.go
30.
braidn@amazon.com
atahlil@amazon.com
41 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cli/internal/pkg/storage/interfaces.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
31.
tayneely@amazon.com
guyhawki@amazon.com
40 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
32.
atahlil@amazon.com
guyhawki@amazon.com
40 shared files
packages/cli/Makefile
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
site/package-lock.json
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cdk/.eslintrc.js
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/configure_describe.go
33.
7497012+a-li@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
39 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
.versionrc
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
.github/semantic.yml
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
.github/workflows/stale_issue.yml
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
bump.sh
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/config/config_client.go
.github/PULL_REQUEST_TEMPLATE.md
scripts/package-release.sh
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
34.
elliotsm@amazon.com
tayneely@amazon.com
38 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/aws/cdk/new_client.go
35.
93286759+aws-genomics-automation@users.noreply.github.com
30308260+abassyiouni@users.noreply.github.com
37 shared files
packages/cli/internal/pkg/cli/format/table.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/workflow_auto_complete.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/cli/logs_core.go
scripts/context-deploy-benchmark/context-benchmark.sh
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/cli/workflow/interface.go
packages/cli/internal/pkg/cli/workflow_auto_complete_test.go
packages/cli/internal/pkg/cli/workflow_run.go
scripts/context-deploy-benchmark/cromwell/agc-project.yaml
packages/cli/internal/pkg/cli/context_destroy.go
scripts/context-deploy-benchmark/nextflow/agc-project.yaml
packages/cli/internal/pkg/cli/context_auto_complete_test.go
packages/cli/internal/pkg/cli/context_auto_complete.go
packages/cli/internal/pkg/mocks/workflow/mock_interfaces.go
packages/cli/internal/pkg/cli/format/table_test.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cli/internal/pkg/mocks/workflow/interfaces.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
36.
IllyaYalovyy@users.noreply.github.com
yalovyyi@amazon.com
35 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
examples/demo-wdl-project/workflows/haplotype/MANIFEST.json
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
examples/demo-nextflow-project/workflows/rnaseq/inputs.json
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
site/content/en/docs/Best practices/scalingworkloads.md
37.
2242982+ghawk1ns@users.noreply.github.com
yalovyyi@amazon.com
33 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
packages/common/Makefile
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
site/content/en/docs/Best practices/scalingworkloads.md
38.
yalovyyi@amazon.com
guyhawki@amazon.com
33 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
packages/common/Makefile
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
site/content/en/docs/Best practices/scalingworkloads.md
39.
IllyaYalovyy@users.noreply.github.com
tneely@users.noreply.github.com
33 shared files
packages/cli/internal/pkg/aws/ddb/client.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
scripts/run-dev.sh
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
40.
braidn@amazon.com
7497012+a-li@users.noreply.github.com
33 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/osutils/utils_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
41.
atahlil@amazon.com
tneely@users.noreply.github.com
32 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/cli/configure_email.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
42.
tayneely@amazon.com
atahlil@amazon.com
27 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
43.
30308260+abassyiouni@users.noreply.github.com
tneely@users.noreply.github.com
26 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
44.
tneely@users.noreply.github.com
7497012+a-li@users.noreply.github.com
26 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/logs_workflow_test.go
.versionrc
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
bump.sh
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
scripts/package-release.sh
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
45.
tneely@users.noreply.github.com
mrschre@amazon.com
25 shared files
examples/nf-core-project/agc-project.yaml
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
46.
7497012+a-li@users.noreply.github.com
atahlil@amazon.com
25 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
47.
tayneely@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
24 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
48.
elliotsm@amazon.com
IllyaYalovyy@users.noreply.github.com
24 shared files
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
49.
7497012+a-li@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
24 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/wes_api/client/model_log.go
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
50.
7497012+a-li@users.noreply.github.com
guyhawki@amazon.com
24 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/wes_api/client/model_log.go
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
51.
atahlil@amazon.com
elliotsm@amazon.com
22 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
52.
braidn@amazon.com
30308260+abassyiouni@users.noreply.github.com
20 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
53.
7497012+a-li@users.noreply.github.com
elliotsm@amazon.com
19 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
.github/PULL_REQUEST_TEMPLATE.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
54.
30308260+abassyiouni@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
18 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
55.
braidn@amazon.com
IllyaYalovyy@users.noreply.github.com
18 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
scripts/cli/install.sh
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
56.
braidn@amazon.com
dovydenk@amazon.com
18 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
57.
mrschre@amazon.com
IllyaYalovyy@users.noreply.github.com
17 shared files
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
packages/cli/go.mod
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
58.
30308260+abassyiouni@users.noreply.github.com
guyhawki@amazon.com
17 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
59.
braidn@amazon.com
mrschre@amazon.com
17 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
60.
tayneely@amazon.com
30308260+abassyiouni@users.noreply.github.com
16 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
61.
93626953+anisatahlil@users.noreply.github.com
braidn@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
62.
93626953+anisatahlil@users.noreply.github.com
tayneely@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
63.
93626953+anisatahlil@users.noreply.github.com
atahlil@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
64.
tayneely@amazon.com
7497012+a-li@users.noreply.github.com
16 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
65.
93286759+aws-genomics-automation@users.noreply.github.com
yalovyyi@amazon.com
15 shared files
site/content/en/docs/Concepts/accounts.md
site/content/en/docs/Concepts/workflows.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
scripts/run-dev.sh
site/content/en/_index.html
site/content/en/docs/Concepts/contexts.md
site/README.md
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
66.
tneely@users.noreply.github.com
dovydenk@amazon.com
15 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/context-stack.ts
67.
elliotsm@amazon.com
mrschre@amazon.com
15 shared files
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
68.
tayneely@amazon.com
IllyaYalovyy@users.noreply.github.com
14 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
69.
waliag87@gmail.com
gwalia@amazon.com
13 shared files
packages/engines/snakemake/Dockerfile
packages/engines/snakemake/THIRD-PARTY
packages/engines/new-engine-template/THIRD-PARTY
packages/engines/new-engine-template/Dockerfile
packages/engines/snakemake/.gitignore
packages/engines/snakemake/README.md
packages/engines/snakemake/LICENSE
packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh
packages/engines/new-engine-template/.aws.sh
packages/engines/new-engine-template/buildspec.yml
packages/engines/snakemake/buildspec.yml
packages/engines/new-engine-template/DEVELOPMENT.MD
packages/engines/snakemake/snakemake.aws.sh
70.
dovydenk@amazon.com
30308260+abassyiouni@users.noreply.github.com
13 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
71.
atahlil@amazon.com
IllyaYalovyy@users.noreply.github.com
13 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
72.
dovydenk@amazon.com
2242982+ghawk1ns@users.noreply.github.com
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/.eslintrc.js
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
73.
dovydenk@amazon.com
guyhawki@amazon.com
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/.eslintrc.js
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
74.
mrschre@amazon.com
30308260+abassyiouni@users.noreply.github.com
12 shared files
packages/cli/internal/pkg/cli/format/table.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
75.
atahlil@amazon.com
30308260+abassyiouni@users.noreply.github.com
12 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
76.
7497012+a-li@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
12 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
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site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
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12 shared files
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packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
78.
93626953+anisatahlil@users.noreply.github.com
guyhawki@amazon.com
12 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
79.
mrschre@amazon.com
yalovyyi@amazon.com
11 shared files
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
80.
tayneely@amazon.com
mrschre@amazon.com
11 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
81.
7497012+a-li@users.noreply.github.com
dovydenk@amazon.com
11 shared files
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
82.
wleepang@gmail.com
2242982+ghawk1ns@users.noreply.github.com
10 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
83.
wleepang@gmail.com
guyhawki@amazon.com
10 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
84.
30308260+abassyiouni@users.noreply.github.com
elliotsm@amazon.com
9 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/cmd/application/main.go
85.
mrschre@amazon.com
7497012+a-li@users.noreply.github.com
9 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/flag.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
86.
93286759+aws-genomics-automation@users.noreply.github.com
wleepang@gmail.com
9 shared files
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
87.
7497012+a-li@users.noreply.github.com
dtzeng@users.noreply.github.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
88.
7497012+a-li@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
89.
dtzeng@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
90.
dtzeng@users.noreply.github.com
tneely@users.noreply.github.com
8 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
91.
wleepang@gmail.com
IllyaYalovyy@users.noreply.github.com
7 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
92.
wleepang@gmail.com
yalovyyi@amazon.com
7 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
93.
dtzeng@users.noreply.github.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
94.
dtzeng@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
95.
dtzeng@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
96.
dtzeng@amazon.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
97.
dtzeng@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
98.
elliotsm@amazon.com
yalovyyi@amazon.com
6 shared files
site/content/en/docs/Concepts/workflows.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/contexts.md
99.
dovydenk@amazon.com
mrschre@amazon.com
6 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/package-lock.json
packages/cdk/lib/stacks/context-stack.ts
100.
93626953+anisatahlil@users.noreply.github.com
tneely@users.noreply.github.com
6 shared files
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/cmd/application/main.go
| Contributor 1 | Contributor 2 | # shared files | |
|---|---|---|---|
| 1. | 2242982+ghawk1ns@users.noreply.github.com | guyhawki@amazon.com |
455 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow/workflow_details.go packages/common/aws/s3/interface.go site/config.toml packages/common/aws/sts/get_account.go packages/wes_api/client/model_error_response.go examples/gatk-best-practices-project/workflow-diagrams/cram-to-bam.dot.png examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/options.json packages/common/aws/cfn/get_stack_status.go packages/common/aws/cfn/get_stack_exports.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/TESTING.md packages/common/aws/ecr/ecr_client_test.go packages/cli/internal/pkg/constants/product.go packages/common/aws/ddb/write_workflow_instance.go packages/cli/internal/pkg/wes/option/workflow_attachment.go packages/common/aws/cdk/append_context_arguments.go examples/gatk-best-practices-project/gatk4-germline-snps-indels/options.json site/content/en/docs/Concepts/workflows.md packages/common/aws/cwl/client.go packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/spec/data.go packages/wes_api/client/.travis.yml examples/gatk-best-practices-project/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json packages/cli/internal/pkg/storage/project_client_test.go packages/cli/internal/pkg/cli/context/manager_deploy.go examples/gatk-best-practices-project/workflow-diagrams/gatk4-basic-joint-genotyping.dot.png packages/cli/internal/pkg/cli/context/context_environment.go packages/common/aws/cdk/deploy_app.go examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/cli/logs_adapter.go packages/common/Makefile packages/common/aws/cwl/stream_logs_test.go site/LICENSE packages/hello.go packages/common/aws/ddb/list_workflow_instances_by_name.go packages/wes_api/client/response.go packages/cli/internal/pkg/term/color/color_test.go packages/cli/LICENSE site/content/en/community/_index.md packages/wes_api/client/model_workflow_type_version.go packages/common/aws/cwl/stream_logs.go packages/cdk/apps/context/app.ts packages/common/aws/cdk/execute_cdk.go packages/common/aws/cdk/parse_output_test.go packages/cli/Makefile extras/agc-minimal-permissions/.npmignore packages/cdk/lib/types/compute-type.ts examples/gatk-best-practices-project/workflow-diagrams/gatk4-data-processing.dot packages/wes_api/client/api/openapi.yaml site/static/favicons/android-chrome-512x512.png packages/common/logging/prefix.go packages/wes_api/client/api_workflow_execution_service.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/spec/workflow.go site/content/en/docs/Best practices/controllingcosts.md packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/common/aws/ssm/client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/gatk-best-practices-project/workflow-diagrams/gatk4-germline-snps-indels.dot.png packages/common/aws/util/time.go site/content/en/docs/Concepts/namespaces.md buildspec.yml examples/demo-wdl-project/workflows/read/read.wdl site/layouts/404.html packages/cli/internal/pkg/cli/spec/project.go packages/cli/.dockerignore packages/cli/internal/pkg/cli/workflow/workflow_list_test.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json examples/demo-wdl-project/workflows/haplotype/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json packages/cli/internal/pkg/cli/project_test.go examples/gatk-best-practices-project/workflow-diagrams/paired-fastq-to-unmapped-bam.dot.png examples/demo-nextflow-project/agc-project.yaml examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/context/interface.go extras/agc-minimal-permissions/cdk.json packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/common/aws/ecr/Interface.go packages/wes_api/client/sigv4_client.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go README.md packages/cli/internal/pkg/cli/context_test.go packages/cdk/README.md packages/common/aws/ddb/list_workflow_instances_by_context.go packages/cli/internal/pkg/cli/spec/context.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/common/aws/provider.go examples/demo-wdl-project/workflows/hello/hello.wdl packages/common/aws/provider_test.go packages/common/internal/pkg/mocks/io/mock_interfaces.go ... |
| 2. | tneely@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
122 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cdk/apps/context/app.ts packages/cli/Makefile packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go buildspec.yml packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/cli/workflow/workflow_list_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/cli/context/common_test.go scripts/update-tags.sh packages/cli/internal/pkg/cli/context.go packages/cli/cmd/application/template/template.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go .gitignore packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/context/manager_status_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/cli/context_status_test.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/project_describe_test.go packages/cdk/lib/constructs/secure-service.ts packages/cli/internal/pkg/mocks/wes/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go packages/cli/internal/pkg/cli/configure.go scripts/run-dev.sh packages/cli/internal/pkg/mocks/wes/interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/cli/workflow/workflow_describe_test.go packages/cli/internal/pkg/cli/logs.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cdk/lib/env/core-app-parameters.ts packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod CONTRIBUTING.md packages/cli/internal/pkg/cli/workflow_status_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/awsresources/awsresources.go packages/cli/internal/pkg/cli/account_deactivate_test.go packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go ... |
| 3. | 93286759+aws-genomics-automation@users.noreply.github.com | atahlil@amazon.com |
119 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cdk/lib/wes_adapter/index.py examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py site/content/en/docs/Workflow engines/miniwdl.md packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/typing_utils.py examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py site/package-lock.json packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts site/themes/docsy packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md packages/cdk/lib/wes_adapter/rest_api/models/service_info.py examples/gatk-best-practices-project-miniwdl/README.md packages/cdk/lib/wes_adapter/rest_api/util.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cdk/lib/wes_adapter/rest_api/workflow/input.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/error_handling.py site/content/en/docs/Concepts/contexts.md packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json .github/workflows/ci.yml packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl ... |
| 4. | tneely@users.noreply.github.com | guyhawki@amazon.com |
116 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cdk/apps/context/app.ts packages/cli/Makefile packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go buildspec.yml packages/cli/internal/pkg/cli/workflow/workflow_list_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/cli/context/common_test.go scripts/update-tags.sh packages/cli/internal/pkg/cli/context.go packages/cli/cmd/application/template/template.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go .gitignore packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/context/manager_status_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/cli/context_status_test.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/project_describe_test.go packages/cdk/lib/constructs/secure-service.ts packages/cli/internal/pkg/mocks/wes/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go packages/cli/internal/pkg/cli/configure.go scripts/run-dev.sh packages/cli/internal/pkg/mocks/wes/interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/cli/workflow/workflow_describe_test.go packages/cli/internal/pkg/cli/logs.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cdk/lib/env/core-app-parameters.ts packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go CONTRIBUTING.md packages/cli/internal/pkg/cli/workflow_status_test.go packages/cli/internal/pkg/cli/awsresources/awsresources.go packages/cli/internal/pkg/cli/account_deactivate_test.go packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_status.go packages/cdk/lib/env/index.ts ... |
| 5. | 93286759+aws-genomics-automation@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
97 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/Makefile packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts buildspec.yml packages/cli/internal/pkg/logging/prefix.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json packages/cdk/lib/constants.ts site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md .gitignore packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cdk/lib/constructs/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/logs_core.go extras/agc-minimal-permissions/package-lock.json scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go .github/workflows/codeql-analysis.yml packages/cli/internal/pkg/cli/context_destroy.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md extras/agc-minimal-permissions/package.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json site/README.md packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/constructs/batch.ts site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go packages/cli/internal/pkg/cli/logs_core_test.go Makefile packages/cdk/lib/types/index.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/cli/context/manager_info.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 6. | 93286759+aws-genomics-automation@users.noreply.github.com | mrschre@amazon.com |
94 shared files
packages/cli/internal/pkg/cli/context/manager_list.go packages/cli/internal/pkg/cli/format/table.go examples/nf-core-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cdk/lib/roles/cromwell-engine-role.ts examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json site/content/en/docs/Concepts/workflows.md site/content/en/docs/Workflow engines/_index.md examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json packages/cli/internal/pkg/cli/workflow_output.go examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json THIRD-PARTY packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/nf-core-project/workflows/rnaseq/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json site/content/en/docs/Workflow engines/miniwdl.md examples/demo-wdl-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/workflow/workflow_output.go packages/cli/internal/pkg/cli/workflow_output_test.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md examples/gatk-best-practices-project/README.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/project_validate_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_output_test.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/project_validate.go packages/cli/internal/pkg/cli/types/context.go site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl packages/cli/internal/pkg/cli/describe_output_test.go examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/nf-core-project/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl packages/cli/internal/pkg/mocks/manager/interfaces.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go site/content/en/docs/Concepts/projects.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl packages/cli/internal/pkg/cli/project.go examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl site/content/en/docs/Getting started/installation.md examples/nf-core-project/workflows/rnaseq/inputs.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/slices/slice_utils.go packages/cli/internal/pkg/slices/slice_utils_test.go |
| 7. | 93286759+aws-genomics-automation@users.noreply.github.com | guyhawki@amazon.com |
91 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/Makefile packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts buildspec.yml examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json packages/cdk/lib/constants.ts site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md .gitignore packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cdk/lib/constructs/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/logs_core.go extras/agc-minimal-permissions/package-lock.json scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md extras/agc-minimal-permissions/package.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json site/README.md packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cdk/lib/constructs/batch.ts site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go packages/cli/internal/pkg/cli/logs_core_test.go Makefile packages/cdk/lib/types/index.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/context/manager_info.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 8. | 93286759+aws-genomics-automation@users.noreply.github.com | tneely@users.noreply.github.com |
88 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go examples/nf-core-project/agc-project.yaml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go buildspec.yml packages/cli/internal/pkg/logging/prefix.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go .versionrc packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cli/internal/pkg/mocks/io/mock_interfaces.go CHANGELOG.md .gitignore packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go bump.sh packages/cli/internal/pkg/cli/logs_core.go scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/account_activate_test.go scripts/package-release.sh packages/cli/internal/pkg/aws/cwl/get_logs.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/cli/context/manager_info.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 9. | elliotsm@amazon.com | tneely@users.noreply.github.com |
86 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/aws/s3/bucket_exists.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/aws/ddb/get_workflow_instance_by_id.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cfn/get_stack_status.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_context.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cfn/list_stacks.go packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/aws/s3/upload_file.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/aws/ddb/list_workflows.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/batch/get_jobs.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/aws/sts/get_account.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/aws/ecr/image_listable.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/aws/cfn/get_stack_exports.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_name.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/s3/sync_file.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cfn/delete_stack.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/aws/cwl/get_logs.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/aws/ecr/image_reference.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go packages/cli/internal/pkg/aws/ddb/write_workflow_instance.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 10. | elliotsm@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
71 shared files
packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/cli/spec/project.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/cli.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/clierror/cli_error.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 11. | elliotsm@amazon.com | guyhawki@amazon.com |
68 shared files
packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/cli/spec/project.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/cli.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/clierror/cli_error.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 12. | braidn@amazon.com | tayneely@amazon.com |
64 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 13. | atahlil@amazon.com | dovydenk@amazon.com |
64 shared files
packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/package.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/.eslintrc.js packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl |
| 14. | 93286759+aws-genomics-automation@users.noreply.github.com | dovydenk@amazon.com |
64 shared files
packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl |
| 15. | tneely@users.noreply.github.com | braidn@amazon.com |
62 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 16. | 2242982+ghawk1ns@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
58 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/storage/project_client_test.go site/content/en/community/_index.md packages/cli/Makefile site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md packages/cli/internal/pkg/logging/prefix.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Concepts/logs.md scripts/cli/install.sh packages/cli/internal/pkg/cli/format/text_test.go site/README.md site/content/en/about/_index.html packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md packages/cli/internal/pkg/cli/logs_core_test.go site/content/en/docs/Concepts/_index.md packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go site/content/en/docs/Best practices/scalingworkloads.md |
| 17. | braidn@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
58 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cdk/Makefile packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go scripts/cli/install.sh packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cdk/lib/stacks/nested/nested-engine-stack.ts packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 18. | braidn@amazon.com | guyhawki@amazon.com |
55 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cdk/Makefile packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go scripts/cli/install.sh packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cdk/lib/stacks/nested/nested-engine-stack.ts packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cdk/lib/stacks/index.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 19. | 93286759+aws-genomics-automation@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
54 shared files
site/content/en/docs/Concepts/accounts.md site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/version/cache.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/version/replenish_func.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/version/cache_test.go packages/cli/internal/pkg/version/interfaces.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/version/store_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/version/version_check_result.go packages/cli/internal/pkg/version/store.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go examples/demo-wdl-project/workflows/words/MANIFEST.json scripts/run-dev.sh site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/version/checker.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/version/replenish_func_test.go site/README.md packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/version/check_func.go packages/cli/internal/pkg/version/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/version/info.go packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/version/checker_test.go packages/cli/internal/pkg/version/check_func_test.go examples/demo-wdl-project/workflows/read/main.wdl |
| 20. | IllyaYalovyy@users.noreply.github.com | guyhawki@amazon.com |
54 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/storage/project_client_test.go site/content/en/community/_index.md packages/cli/Makefile site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Concepts/logs.md scripts/cli/install.sh packages/cli/internal/pkg/cli/format/text_test.go site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md packages/cli/internal/pkg/cli/logs_core_test.go site/content/en/docs/Concepts/_index.md packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go site/content/en/docs/Best practices/scalingworkloads.md |
| 21. | 93286759+aws-genomics-automation@users.noreply.github.com | elliotsm@amazon.com |
50 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go .github/ISSUE_TEMPLATE/feature_request.md packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go .github/ISSUE_TEMPLATE/bug_report.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/PULL_REQUEST_TEMPLATE.md packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cwl/get_logs.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go |
| 22. | braidn@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
48 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 23. | atahlil@amazon.com | mrschre@amazon.com |
47 shared files
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json site/content/en/docs/Workflow engines/miniwdl.md examples/demo-wdl-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts site/package-lock.json packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts site/themes/docsy examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl site/content/en/docs/Getting started/installation.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl |
| 24. | elliotsm@amazon.com | braidn@amazon.com |
46 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 25. | mrschre@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
45 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go site/content/en/docs/Concepts/contexts.md packages/cdk/package-lock.json packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 26. | tneely@users.noreply.github.com | tayneely@amazon.com |
44 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 27. | tayneely@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
43 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 28. | mrschre@amazon.com | guyhawki@amazon.com |
42 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go site/content/en/docs/Concepts/contexts.md packages/cdk/package-lock.json packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 29. | atahlil@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
41 shared files
packages/cli/Makefile packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json site/package-lock.json packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts site/themes/docsy packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cdk/.eslintrc.js site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/configure_describe.go |
| 30. | braidn@amazon.com | atahlil@amazon.com |
41 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/requirements.txt packages/cli/internal/pkg/storage/interfaces.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 31. | tayneely@amazon.com | guyhawki@amazon.com |
40 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 32. | atahlil@amazon.com | guyhawki@amazon.com |
40 shared files
packages/cli/Makefile packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json site/package-lock.json packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cdk/.eslintrc.js site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/configure_describe.go |
| 33. | 7497012+a-li@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
39 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go .versionrc packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md .github/semantic.yml packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py .github/workflows/stale_issue.yml packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py bump.sh packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/config/config_client.go .github/PULL_REQUEST_TEMPLATE.md scripts/package-release.sh site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 34. | elliotsm@amazon.com | tayneely@amazon.com |
38 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 35. | 93286759+aws-genomics-automation@users.noreply.github.com | 30308260+abassyiouni@users.noreply.github.com |
37 shared files
packages/cli/internal/pkg/cli/format/table.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/workflow_auto_complete.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/cli/logs_core.go scripts/context-deploy-benchmark/context-benchmark.sh packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/cli/workflow/interface.go packages/cli/internal/pkg/cli/workflow_auto_complete_test.go packages/cli/internal/pkg/cli/workflow_run.go scripts/context-deploy-benchmark/cromwell/agc-project.yaml packages/cli/internal/pkg/cli/context_destroy.go scripts/context-deploy-benchmark/nextflow/agc-project.yaml packages/cli/internal/pkg/cli/context_auto_complete_test.go packages/cli/internal/pkg/cli/context_auto_complete.go packages/cli/internal/pkg/mocks/workflow/mock_interfaces.go packages/cli/internal/pkg/cli/format/table_test.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/mocks/workflow/interfaces.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 36. | IllyaYalovyy@users.noreply.github.com | yalovyyi@amazon.com |
35 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go examples/demo-wdl-project/workflows/haplotype/MANIFEST.json site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md examples/demo-nextflow-project/workflows/rnaseq/inputs.json site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml site/content/en/docs/Best practices/scalingworkloads.md |
| 37. | 2242982+ghawk1ns@users.noreply.github.com | yalovyyi@amazon.com |
33 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md packages/common/Makefile site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md site/content/en/docs/Best practices/scalingworkloads.md |
| 38. | yalovyyi@amazon.com | guyhawki@amazon.com |
33 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md packages/common/Makefile site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md site/content/en/docs/Best practices/scalingworkloads.md |
| 39. | IllyaYalovyy@users.noreply.github.com | tneely@users.noreply.github.com |
33 shared files
packages/cli/internal/pkg/aws/ddb/client.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go scripts/run-dev.sh site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go |
| 40. | braidn@amazon.com | 7497012+a-li@users.noreply.github.com |
33 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/osutils/utils_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context/manager_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 41. | atahlil@amazon.com | tneely@users.noreply.github.com |
32 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/configure_email.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 42. | tayneely@amazon.com | atahlil@amazon.com |
27 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 43. | 30308260+abassyiouni@users.noreply.github.com | tneely@users.noreply.github.com |
26 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 44. | tneely@users.noreply.github.com | 7497012+a-li@users.noreply.github.com |
26 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/logs_workflow_test.go .versionrc packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md bump.sh packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go scripts/package-release.sh site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 45. | tneely@users.noreply.github.com | mrschre@amazon.com |
25 shared files
examples/nf-core-project/agc-project.yaml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 46. | 7497012+a-li@users.noreply.github.com | atahlil@amazon.com |
25 shared files
packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 47. | tayneely@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
24 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 48. | elliotsm@amazon.com | IllyaYalovyy@users.noreply.github.com |
24 shared files
site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 49. | 7497012+a-li@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
24 shared files
packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/wes_api/client/model_log.go packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 50. | 7497012+a-li@users.noreply.github.com | guyhawki@amazon.com |
24 shared files
packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/wes_api/client/model_log.go packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 51. | atahlil@amazon.com | elliotsm@amazon.com |
22 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 52. | braidn@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
20 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 53. | 7497012+a-li@users.noreply.github.com | elliotsm@amazon.com |
19 shared files
packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context/manager_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go .github/PULL_REQUEST_TEMPLATE.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go |
| 54. | 30308260+abassyiouni@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
18 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 55. | braidn@amazon.com | IllyaYalovyy@users.noreply.github.com |
18 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go scripts/cli/install.sh packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 56. | braidn@amazon.com | dovydenk@amazon.com |
18 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 57. | mrschre@amazon.com | IllyaYalovyy@users.noreply.github.com |
17 shared files
site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md packages/cli/go.mod site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 58. | 30308260+abassyiouni@users.noreply.github.com | guyhawki@amazon.com |
17 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 59. | braidn@amazon.com | mrschre@amazon.com |
17 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context_deploy_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 60. | tayneely@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
16 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 61. | 93626953+anisatahlil@users.noreply.github.com | braidn@amazon.com |
16 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 62. | 93626953+anisatahlil@users.noreply.github.com | tayneely@amazon.com |
16 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 63. | 93626953+anisatahlil@users.noreply.github.com | atahlil@amazon.com |
16 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 64. | tayneely@amazon.com | 7497012+a-li@users.noreply.github.com |
16 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 65. | 93286759+aws-genomics-automation@users.noreply.github.com | yalovyyi@amazon.com |
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site/content/en/docs/Concepts/accounts.md site/content/en/docs/Concepts/workflows.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md scripts/run-dev.sh site/content/en/_index.html site/content/en/docs/Concepts/contexts.md site/README.md site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 66. | tneely@users.noreply.github.com | dovydenk@amazon.com |
15 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/context-stack.ts |
| 67. | elliotsm@amazon.com | mrschre@amazon.com |
15 shared files
site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 68. | tayneely@amazon.com | IllyaYalovyy@users.noreply.github.com |
14 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 69. | waliag87@gmail.com | gwalia@amazon.com |
13 shared files
packages/engines/snakemake/Dockerfile packages/engines/snakemake/THIRD-PARTY packages/engines/new-engine-template/THIRD-PARTY packages/engines/new-engine-template/Dockerfile packages/engines/snakemake/.gitignore packages/engines/snakemake/README.md packages/engines/snakemake/LICENSE packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh packages/engines/new-engine-template/ packages/engines/new-engine-template/buildspec.yml packages/engines/snakemake/buildspec.yml packages/engines/new-engine-template/DEVELOPMENT.MD packages/engines/snakemake/snakemake.aws.sh |
| 70. | dovydenk@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
13 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 71. | atahlil@amazon.com | IllyaYalovyy@users.noreply.github.com |
13 shared files
packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 72. | dovydenk@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/util/index.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/.eslintrc.js packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 73. | dovydenk@amazon.com | guyhawki@amazon.com |
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/util/index.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/.eslintrc.js packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 74. | mrschre@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
12 shared files
packages/cli/internal/pkg/cli/format/table.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 75. | atahlil@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
12 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 76. | 7497012+a-li@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
12 shared files
packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 77. | 93626953+anisatahlil@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
12 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 78. | 93626953+anisatahlil@users.noreply.github.com | guyhawki@amazon.com |
12 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 79. | mrschre@amazon.com | yalovyyi@amazon.com |
11 shared files
site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md |
| 80. | tayneely@amazon.com | mrschre@amazon.com |
11 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 81. | 7497012+a-li@users.noreply.github.com | dovydenk@amazon.com |
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packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 82. | wleepang@gmail.com | 2242982+ghawk1ns@users.noreply.github.com |
10 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md |
| 83. | wleepang@gmail.com | guyhawki@amazon.com |
10 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md |
| 84. | 30308260+abassyiouni@users.noreply.github.com | elliotsm@amazon.com |
9 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/cmd/application/main.go |
| 85. | mrschre@amazon.com | 7497012+a-li@users.noreply.github.com |
9 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/flag.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go examples/gatk-best-practices-project-miniwdl/agc-project.yaml site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 86. | 93286759+aws-genomics-automation@users.noreply.github.com | wleepang@gmail.com |
9 shared files
site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 87. | 7497012+a-li@users.noreply.github.com | dtzeng@users.noreply.github.com |
8 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 88. | 7497012+a-li@users.noreply.github.com | dtzeng@amazon.com |
8 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 89. | dtzeng@users.noreply.github.com | dtzeng@amazon.com |
8 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 90. | dtzeng@users.noreply.github.com | tneely@users.noreply.github.com |
8 shared files
packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 91. | wleepang@gmail.com | IllyaYalovyy@users.noreply.github.com |
7 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 92. | wleepang@gmail.com | yalovyyi@amazon.com |
7 shared files
site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 93. | dtzeng@users.noreply.github.com | braidn@amazon.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 94. | dtzeng@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 95. | dtzeng@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 96. | dtzeng@amazon.com | braidn@amazon.com |
7 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 97. | dtzeng@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
7 shared files
packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 98. | elliotsm@amazon.com | yalovyyi@amazon.com |
6 shared files
site/content/en/docs/Concepts/workflows.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/contexts.md |
| 99. | dovydenk@amazon.com | mrschre@amazon.com |
6 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/package-lock.json packages/cdk/lib/stacks/context-stack.ts |
| 100. | 93626953+anisatahlil@users.noreply.github.com | tneely@users.noreply.github.com |
6 shared files
packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/cmd/application/main.go |
34 contributors (230 commits):
| # | Contributor |
First Commit |
Latest Commit |
Commits Count |
|---|---|---|---|---|
| 1. | tneely@users.noreply.github.com | 2021-09-27 | 2022-01-10 | 24 (10%) |
| 2. | mrschre@amazon.com | 2021-09-28 | 2021-12-13 | 24 (10%) |
| 3. | elliotsm@amazon.com | 2021-09-28 | 2022-01-25 | 22 (9%) |
| 4. | atahlil@amazon.com | 2021-11-09 | 2021-11-12 | 21 (9%) |
| 5. | 7497012+a-li@users.noreply.github.com | 2021-09-29 | 2022-01-26 | 19 (8%) |
| 6. | IllyaYalovyy@users.noreply.github.com | 2021-09-25 | 2022-01-05 | 16 (6%) |
| 7. | wleepang@gmail.com | 2021-09-27 | 2021-11-10 | 14 (6%) |
| 8. | 2242982+ghawk1ns@users.noreply.github.com | 2021-09-07 | 2022-01-28 | 13 (5%) |
| 9. | braidn@amazon.com | 2021-11-01 | 2021-12-17 | 13 (5%) |
| 10. | 30308260+abassyiouni@users.noreply.github.com | 2021-09-30 | 2022-01-05 | 9 (3%) |
| 11. | markjschreiber@gmail.com | 2021-09-22 | 2021-09-27 | 6 (2%) |
| 12. | waliag87@gmail.com | 2022-01-04 | 2022-01-12 | 5 (2%) |
| 13. | gwalia@amazon.com | 2021-12-30 | 2022-01-07 | 5 (2%) |
| 14. | dovydenk@amazon.com | 2021-09-28 | 2021-11-24 | 5 (2%) |
| 15. | 93626953+anisatahlil@users.noreply.github.com | 2021-11-15 | 2021-12-07 | 3 (1%) |
| 16. | andrewjdresser@gmail.com | 2021-10-06 | 2021-10-13 | 3 (1%) |
| 17. | 49699333+dependabot[bot]@users.noreply.github.com | 2021-09-29 | 2021-09-29 | 3 (1%) |
| 18. | dtzeng@users.noreply.github.com | 2022-01-21 | 2022-01-28 | 2 (<1%) |
| 19. | dovydenko.andrej@gmail.com | 2021-12-10 | 2021-12-11 | 2 (<1%) |
| 20. | dzl@88665a545034.ant.amazon.com | 2021-11-15 | 2021-11-17 | 2 (<1%) |
| 21. | seaam@amazon.com | 2021-10-13 | 2021-10-13 | 2 (<1%) |
| 22. | mr.fermion@gmail.com | 2021-09-30 | 2021-09-30 | 2 (<1%) |
| 23. | midaisuk@gmail.com | 2021-09-27 | 2021-09-27 | 2 (<1%) |
| 24. | yalovyyi@amazon.com | 2021-09-25 | 2021-09-27 | 2 (<1%) |
| 25. | guyhawki@amazon.com | 2021-09-01 | 2021-09-23 | 2 (<1%) |
| 26. | dtzeng@amazon.com | 2022-01-20 | 2022-01-20 | 1 (<1%) |
| 27. | chuanyut@amazon.com | 2022-01-13 | 2022-01-13 | 1 (<1%) |
| 28. | evanyui@hotmail.com | 2022-01-11 | 2022-01-11 | 1 (<1%) |
| 29. | anovak@soe.ucsc.edu | 2021-12-21 | 2021-12-21 | 1 (<1%) |
| 30. | tayneely@amazon.com | 2021-11-17 | 2021-11-17 | 1 (<1%) |
| 31. | awlucattini@icloud.com | 2021-11-16 | 2021-11-16 | 1 (<1%) |
| 32. | 93286759+aws-genomics-automation@users.noreply.github.com | 2021-11-11 | 2021-11-11 | 1 (<1%) |
| 33. | aaron.j.friedman@gmail.com | 2021-09-28 | 2021-09-28 | 1 (<1%) |
| 34. | badger@gitter.im | 2021-09-27 | 2021-09-27 | 1 (<1%) |
Contributor Dependencies
A contributor dependency is detected if two contributors have changed the same files in the past 365 days.
C-median: 15.0
A half of the contributors has more than 15.0 connections, and a half has less than this number.
C-mean: 16.1
An average number of connections a contributor has with other contributors.
C-index: 16.0
There are 16.0 contributors with 16.0 or more connections.
Most Connected Contributors
| Contributor | # connections | # commits | |
|---|---|---|---|
| 1. | 2242982+ghawk1ns@users.noreply.github.com | 30 | 13 |
| 2. | guyhawki@amazon.com | 30 | 2 |
| 3. | 93286759+aws-genomics-automation@users.noreply.github.com | 29 | 1 |
| 4. | IllyaYalovyy@users.noreply.github.com | 28 | 16 |
| 5. | tneely@users.noreply.github.com | 26 | 24 |
| 6. | mrschre@amazon.com | 26 | 24 |
| 7. | braidn@amazon.com | 25 | 13 |
| 8. | atahlil@amazon.com | 24 | 21 |
| 9. | elliotsm@amazon.com | 23 | 22 |
| 10. | 7497012+a-li@users.noreply.github.com | 23 | 19 |
| 11. | wleepang@gmail.com | 22 | 14 |
| 12. | yalovyyi@amazon.com | 22 | 2 |
| 13. | tayneely@amazon.com | 21 | 1 |
| 14. | dtzeng@users.noreply.github.com | 19 | 2 |
| 15. | dtzeng@amazon.com | 18 | 1 |
| 16. | midaisuk@gmail.com | 17 | 2 |
| 17. | 30308260+abassyiouni@users.noreply.github.com | 16 | 9 |
| 18. | 93626953+anisatahlil@users.noreply.github.com | 14 | 3 |
| 19. | seaam@amazon.com | 14 | 2 |
| 20. | andrewjdresser@gmail.com | 13 | 3 |
| 21. | dovydenk@amazon.com | 12 | 5 |
| 22. | markjschreiber@gmail.com | 11 | 6 |
| 23. | anovak@soe.ucsc.edu | 10 | 1 |
| 24. | awlucattini@icloud.com | 10 | 1 |
| 25. | badger@gitter.im | 10 | 1 |
| 26. | aaron.j.friedman@gmail.com | 9 | 1 |
| 27. | dovydenko.andrej@gmail.com | 8 | 2 |
| 28. | chuanyut@amazon.com | 7 | 1 |
| 29. | evanyui@hotmail.com | 7 | 1 |
| 30. | waliag87@gmail.com | 6 | 5 |
| 31. | 49699333+dependabot[bot]@users.noreply.github.com | 6 | 3 |
| 32. | dzl@88665a545034.ant.amazon.com | 6 | 2 |
| 33. | mr.fermion@gmail.com | 5 | 2 |
| 34. | gwalia@amazon.com | 3 | 5 |
Contributor Dependencies via Shared Files
show graph...
The number on lines shows the number of same files that both persons changed in past 365 days.
- open 3D force graph
Contributor 1
Contributor 2
# shared files
1.
2242982+ghawk1ns@users.noreply.github.com
guyhawki@amazon.com
455 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/content/en/docs/Concepts/accounts.md
packages/cli/internal/pkg/cli/workflow/workflow_details.go
packages/common/aws/s3/interface.go
site/config.toml
packages/common/aws/sts/get_account.go
packages/wes_api/client/model_error_response.go
examples/gatk-best-practices-project/workflow-diagrams/cram-to-bam.dot.png
examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/options.json
packages/common/aws/cfn/get_stack_status.go
packages/common/aws/cfn/get_stack_exports.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/wes/interface.go
packages/cli/TESTING.md
packages/common/aws/ecr/ecr_client_test.go
packages/cli/internal/pkg/constants/product.go
packages/common/aws/ddb/write_workflow_instance.go
packages/cli/internal/pkg/wes/option/workflow_attachment.go
packages/common/aws/cdk/append_context_arguments.go
examples/gatk-best-practices-project/gatk4-germline-snps-indels/options.json
site/content/en/docs/Concepts/workflows.md
packages/common/aws/cwl/client.go
packages/cli/internal/pkg/cli/context_describe.go
.go-version
packages/cli/internal/pkg/cli/spec/data.go
packages/wes_api/client/.travis.yml
examples/gatk-best-practices-project/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
packages/cli/internal/pkg/storage/project_client_test.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
examples/gatk-best-practices-project/workflow-diagrams/gatk4-basic-joint-genotyping.dot.png
packages/cli/internal/pkg/cli/context/context_environment.go
packages/common/aws/cdk/deploy_app.go
examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cli/internal/pkg/cli/logs_adapter.go
packages/common/Makefile
packages/common/aws/cwl/stream_logs_test.go
site/LICENSE
packages/hello.go
packages/common/aws/ddb/list_workflow_instances_by_name.go
packages/wes_api/client/response.go
packages/cli/internal/pkg/term/color/color_test.go
packages/cli/LICENSE
site/content/en/community/_index.md
packages/wes_api/client/model_workflow_type_version.go
packages/common/aws/cwl/stream_logs.go
packages/cdk/apps/context/app.ts
packages/common/aws/cdk/execute_cdk.go
packages/common/aws/cdk/parse_output_test.go
packages/cli/Makefile
extras/agc-minimal-permissions/.npmignore
packages/cdk/lib/types/compute-type.ts
examples/gatk-best-practices-project/workflow-diagrams/gatk4-data-processing.dot
packages/wes_api/client/api/openapi.yaml
site/static/favicons/android-chrome-512x512.png
packages/common/logging/prefix.go
packages/wes_api/client/api_workflow_execution_service.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/spec/workflow.go
site/content/en/docs/Best practices/controllingcosts.md
packages/cli/internal/pkg/wes/Client.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/common/aws/ssm/client.go
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/gatk-best-practices-project/workflow-diagrams/gatk4-germline-snps-indels.dot.png
packages/common/aws/util/time.go
site/content/en/docs/Concepts/namespaces.md
buildspec.yml
examples/demo-wdl-project/workflows/read/read.wdl
site/layouts/404.html
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/.dockerignore
packages/cli/internal/pkg/cli/workflow/workflow_list_test.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
examples/demo-wdl-project/workflows/haplotype/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
packages/cli/internal/pkg/cli/project_test.go
examples/gatk-best-practices-project/workflow-diagrams/paired-fastq-to-unmapped-bam.dot.png
examples/demo-nextflow-project/agc-project.yaml
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
packages/cli/internal/pkg/cli/context/interface.go
extras/agc-minimal-permissions/cdk.json
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/common/aws/ecr/Interface.go
packages/wes_api/client/sigv4_client.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
README.md
packages/cli/internal/pkg/cli/context_test.go
packages/cdk/README.md
packages/common/aws/ddb/list_workflow_instances_by_context.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cdk/lib/constructs/api-proxy.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/common/aws/provider.go
examples/demo-wdl-project/workflows/hello/hello.wdl
packages/common/aws/provider_test.go
packages/common/internal/pkg/mocks/io/mock_interfaces.go
...
2.
tneely@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
122 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/wes/interface.go
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/context/context_environment.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cdk/apps/context/app.ts
packages/cli/Makefile
packages/cli/internal/pkg/wes/Client.go
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
buildspec.yml
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/cli/workflow/workflow_list_test.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cdk/lib/constructs/api-proxy.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
packages/cli/internal/pkg/cli/context/common_test.go
scripts/update-tags.sh
packages/cli/internal/pkg/cli/context.go
packages/cli/cmd/application/template/template.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
.gitignore
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/context/manager_status_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/cli/context_status_test.go
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/cmd/application/description.go
packages/cdk/lib/env/context-app-parameters.ts
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/project_describe_test.go
packages/cdk/lib/constructs/secure-service.ts
packages/cli/internal/pkg/mocks/wes/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
packages/cli/internal/pkg/cli/configure.go
scripts/run-dev.sh
packages/cli/internal/pkg/mocks/wes/interfaces.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
site/content/en/_index.html
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/group/group.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/cli/workflow/workflow_describe_test.go
packages/cli/internal/pkg/cli/logs.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cdk/lib/env/core-app-parameters.ts
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
CONTRIBUTING.md
packages/cli/internal/pkg/cli/workflow_status_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/awsresources/awsresources.go
packages/cli/internal/pkg/cli/account_deactivate_test.go
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/project.go
Makefile
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
...
3.
93286759+aws-genomics-automation@users.noreply.github.com
atahlil@amazon.com
119 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cdk/lib/wes_adapter/index.py
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
site/content/en/docs/Workflow engines/miniwdl.md
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
site/package-lock.json
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
site/themes/docsy
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
packages/cdk/lib/wes_adapter/rest_api/encoder.py
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
examples/gatk-best-practices-project-miniwdl/README.md
packages/cdk/lib/wes_adapter/rest_api/util.py
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
site/content/en/docs/Concepts/contexts.md
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
.github/workflows/ci.yml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
...
4.
tneely@users.noreply.github.com
guyhawki@amazon.com
116 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/wes/interface.go
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packages/cli/internal/pkg/cli/workflow_status.go
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examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cdk/lib/roles/cromwell-engine-role.ts
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packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
site/content/en/docs/Concepts/workflows.md
site/content/en/docs/Workflow engines/_index.md
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
packages/cli/internal/pkg/cli/workflow_output.go
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
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packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/nf-core-project/workflows/rnaseq/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
site/content/en/docs/Workflow engines/miniwdl.md
examples/demo-wdl-project/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
packages/cdk/lib/roles/nextflow-engine-role.ts
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packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/workflow/workflow_output.go
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packages/cli/internal/pkg/cli/flag.go
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packages/cli/internal/pkg/cli/types/context.go
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
examples/gatk-best-practices-project-miniwdl/README.md
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packages/cli/internal/pkg/cli/context/manager_list_test.go
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examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
packages/cli/internal/pkg/cli/context_list_test.go
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examples/gatk-best-practices-project-miniwdl/agc-project.yaml
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examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
site/content/en/docs/Concepts/contexts.md
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packages/cli/internal/pkg/mocks/manager/interfaces.go
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packages/cli/internal/pkg/cli/context_deploy_test.go
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examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
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site/content/en/docs/Concepts/projects.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
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examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
site/content/en/docs/Getting started/installation.md
examples/nf-core-project/workflows/rnaseq/inputs.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
packages/cli/internal/pkg/cli/context/manager.go
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examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
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packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
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packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
packages/cdk/lib/constants.ts
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
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packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
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extras/agc-minimal-permissions/lib/policy-statements.ts
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packages/cli/internal/pkg/cli/types/context.go
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packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
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packages/cli/internal/pkg/cli/context_destroy.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
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packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/cli/project_init_test.go
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packages/cdk/lib/constructs/batch.ts
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packages/cdk/lib/constructs/engines/engine-job-definition.ts
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packages/cdk/lib/roles/nextflow-adapter-role.ts
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packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/cmd/application/description.go
packages/cdk/lib/env/context-app-parameters.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
bump.sh
packages/cli/internal/pkg/cli/logs_core.go
scripts/run-dev.sh
packages/cli/internal/pkg/cli/workflow_status.go
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/group/group.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/project.go
Makefile
packages/cli/internal/pkg/cli/account_activate_test.go
scripts/package-release.sh
packages/cli/internal/pkg/aws/cwl/get_logs.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cdk/lib/env/index.ts
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/cli/context/manager_info.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
9.
elliotsm@amazon.com
tneely@users.noreply.github.com
86 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/aws/s3/bucket_exists.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/aws/ddb/get_workflow_instance_by_id.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cfn/get_stack_status.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_context.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cfn/list_stacks.go
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/aws/s3/upload_file.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/aws/ddb/list_workflows.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/batch/get_jobs.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/aws/sts/get_account.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/aws/ecr/image_listable.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/aws/cfn/get_stack_exports.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_name.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/s3/sync_file.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cfn/delete_stack.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/aws/cwl/get_logs.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/aws/ecr/image_reference.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
packages/cli/internal/pkg/aws/ddb/write_workflow_instance.go
packages/cli/internal/pkg/aws/cdk/new_client.go
10.
elliotsm@amazon.com
2242982+ghawk1ns@users.noreply.github.com
71 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/cli.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/clierror/cli_error.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
packages/cli/internal/pkg/aws/cdk/new_client.go
11.
elliotsm@amazon.com
guyhawki@amazon.com
68 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/logs_adapter.go
packages/cli/internal/pkg/cli/spec/project.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context/common_test.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow_list.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/util/instance-types.ts
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
packages/cli/internal/pkg/cli/spec/io.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/cli.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/context/manager_info_test.go
packages/cli/internal/pkg/cli/account_deactivate.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/clierror/cli_error.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/project_describe.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_engine.go
packages/cli/internal/pkg/cli/logs_access.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
12.
braidn@amazon.com
tayneely@amazon.com
64 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
13.
atahlil@amazon.com
dovydenk@amazon.com
64 shared files
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/package.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/.eslintrc.js
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
14.
93286759+aws-genomics-automation@users.noreply.github.com
dovydenk@amazon.com
64 shared files
packages/cdk/lib/wes_adapter/index.py
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml
packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py
packages/cdk/lib/wes_adapter/rest_api/models/run_status.py
packages/cdk/lib/wes_adapter/rest_api/models/__init__.py
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py
packages/cdk/lib/wes_adapter/rest_api/models/run_id.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py
packages/cdk/lib/wes_adapter/rest_api/typing_utils.py
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/constants.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/state.py
packages/cdk/lib/wes_adapter/start-local-server.sh
packages/cdk/lib/wes_adapter/format-code.sh
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/models/run_request.py
packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py
packages/cdk/lib/wes_adapter/local-server.py
packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/wes_adapter/rest_api/encoder.py
packages/cdk/lib/wes_adapter/rest_api/models/service_info.py
packages/cdk/lib/wes_adapter/rest_api/util.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/wes_adapter/rest_api/__init__.py
packages/cdk/lib/wes_adapter/init-local-server.sh
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/input.json
packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py
packages/cdk/lib/wes_adapter/rest_api/error_handling.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py
packages/cdk/lib/wes_adapter/rest_api/models/log.py
packages/cdk/lib/wes_adapter/rest_api/models/run_log.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py
packages/cdk/lib/wes_adapter/rest_api/models/error_response.py
packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py
packages/cdk/lib/wes_adapter/README.md
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py
packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py
packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl
15.
tneely@users.noreply.github.com
braidn@amazon.com
62 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
16.
2242982+ghawk1ns@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
58 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/storage/project_client_test.go
site/content/en/community/_index.md
packages/cli/Makefile
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
packages/cli/internal/pkg/logging/prefix.go
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
packages/cli/internal/pkg/cli/format/text_test.go
site/README.md
site/content/en/about/_index.html
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
packages/cli/internal/pkg/cli/logs_core_test.go
site/content/en/docs/Concepts/_index.md
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
site/content/en/docs/Best practices/scalingworkloads.md
17.
braidn@amazon.com
2242982+ghawk1ns@users.noreply.github.com
58 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/Makefile
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
scripts/cli/install.sh
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cdk/lib/stacks/nested/nested-engine-stack.ts
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
18.
braidn@amazon.com
guyhawki@amazon.com
55 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/Makefile
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
scripts/cli/install.sh
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cdk/lib/stacks/nested/nested-engine-stack.ts
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cdk/lib/stacks/index.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
19.
93286759+aws-genomics-automation@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
54 shared files
site/content/en/docs/Concepts/accounts.md
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/version/cache.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/version/replenish_func.go
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/version/cache_test.go
packages/cli/internal/pkg/version/interfaces.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/version/store_test.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/version/version_check_result.go
packages/cli/internal/pkg/version/store.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
examples/demo-wdl-project/workflows/words/MANIFEST.json
scripts/run-dev.sh
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/version/checker.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/version/replenish_func_test.go
site/README.md
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/version/check_func.go
packages/cli/internal/pkg/version/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/version/info.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/version/checker_test.go
packages/cli/internal/pkg/version/check_func_test.go
examples/demo-wdl-project/workflows/read/main.wdl
20.
IllyaYalovyy@users.noreply.github.com
guyhawki@amazon.com
54 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
.go-version
packages/cli/internal/pkg/storage/project_client_test.go
site/content/en/community/_index.md
packages/cli/Makefile
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
examples/demo-wdl-project/agc-project.yaml
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
packages/cli/internal/pkg/cli/format/text_test.go
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
packages/cli/internal/pkg/cli/logs_core_test.go
site/content/en/docs/Concepts/_index.md
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
site/content/en/docs/Best practices/scalingworkloads.md
21.
93286759+aws-genomics-automation@users.noreply.github.com
elliotsm@amazon.com
50 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/cli/workflow_describe.go
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/mocks/io/mock_interfaces.go
site/content/en/docs/Getting started/helloworld.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
.github/ISSUE_TEMPLATE/feature_request.md
packages/cdk/lib/util/instance-types.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/io/interfaces.go
.github/ISSUE_TEMPLATE/bug_report.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/PULL_REQUEST_TEMPLATE.md
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/aws/cwl/get_logs.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/context_status.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
22.
braidn@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
48 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constructs/engines/engine-job-definition.ts
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/roles/policies/head-job-batch-policy.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/environment/environment.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/roles/policies/batch-policies.ts
packages/cdk/lib/constructs/batch.ts
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
23.
atahlil@amazon.com
mrschre@amazon.com
47 shared files
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json
site/content/en/docs/Workflow engines/miniwdl.md
examples/demo-wdl-project/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
site/package-lock.json
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
site/themes/docsy
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Workflow engines/nextflow.md
site/content/en/docs/Workflow engines/cromwell.md
examples/gatk-best-practices-project-miniwdl/README.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json
site/content/en/docs/Concepts/contexts.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json
packages/cdk/package-lock.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl
examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl
site/content/en/docs/Getting started/installation.md
examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json
examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
24.
elliotsm@amazon.com
braidn@amazon.com
46 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cdk/apps/core/app.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/npm-shrinkwrap.json
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/aws/cdk/new_client.go
25.
mrschre@amazon.com
2242982+ghawk1ns@users.noreply.github.com
45 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context/info.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_schema.json
site/themes/docsy
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
site/content/en/docs/Concepts/contexts.md
packages/cdk/package-lock.json
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
26.
tneely@users.noreply.github.com
tayneely@amazon.com
44 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
27.
tayneely@amazon.com
2242982+ghawk1ns@users.noreply.github.com
43 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
packages/cli/internal/pkg/aws/cdk/new_client.go
28.
mrschre@amazon.com
guyhawki@amazon.com
42 shared files
packages/cli/internal/pkg/cli/context/manager_list.go
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/spec/context.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/types/workflow.go
site/package-lock.json
site/content/en/docs/Tutorials/_index.md
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context/info.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/engines.md
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
site/content/en/docs/Concepts/contexts.md
packages/cdk/package-lock.json
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
site/content/en/docs/Concepts/projects.md
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
29.
atahlil@amazon.com
2242982+ghawk1ns@users.noreply.github.com
41 shared files
packages/cli/Makefile
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
site/package-lock.json
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
site/themes/docsy
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cdk/.eslintrc.js
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/configure_describe.go
30.
braidn@amazon.com
atahlil@amazon.com
41 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cli/internal/pkg/storage/interfaces.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
31.
tayneely@amazon.com
guyhawki@amazon.com
40 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
32.
atahlil@amazon.com
guyhawki@amazon.com
40 shared files
packages/cli/Makefile
packages/cli/internal/pkg/cli/config/io.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
site/package-lock.json
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
extras/agc-minimal-permissions/lib/policy-statements.ts
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
extras/agc-minimal-permissions/lib/permissions-stack.ts
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cdk/.eslintrc.js
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/config/config.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cli/internal/pkg/cli/configure_describe.go
33.
7497012+a-li@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
39 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
.versionrc
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
.github/semantic.yml
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
.github/workflows/stale_issue.yml
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
bump.sh
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/config/config_client.go
.github/PULL_REQUEST_TEMPLATE.md
scripts/package-release.sh
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
34.
elliotsm@amazon.com
tayneely@amazon.com
38 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/context/interface.go
packages/cli/internal/pkg/cli/context/manager_deploy_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/context/util.go
packages/cli/internal/pkg/aws/cdk/destroy_app.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/clear_context_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/mocks/context/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context/manager_destroy.go
packages/cli/internal/pkg/aws/cdk/clear_context.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/aws/cdk/deploy_app_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager_destroy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/aws/cdk/destroy_app_test.go
packages/cli/internal/pkg/aws/cdk/new_client.go
35.
93286759+aws-genomics-automation@users.noreply.github.com
30308260+abassyiouni@users.noreply.github.com
37 shared files
packages/cli/internal/pkg/cli/format/table.go
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/workflow_auto_complete.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/cli/logs_core.go
scripts/context-deploy-benchmark/context-benchmark.sh
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/cli/workflow/interface.go
packages/cli/internal/pkg/cli/workflow_auto_complete_test.go
packages/cli/internal/pkg/cli/workflow_run.go
scripts/context-deploy-benchmark/cromwell/agc-project.yaml
packages/cli/internal/pkg/cli/context_destroy.go
scripts/context-deploy-benchmark/nextflow/agc-project.yaml
packages/cli/internal/pkg/cli/context_auto_complete_test.go
packages/cli/internal/pkg/cli/context_auto_complete.go
packages/cli/internal/pkg/mocks/workflow/mock_interfaces.go
packages/cli/internal/pkg/cli/format/table_test.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cli/internal/pkg/mocks/workflow/interfaces.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
36.
IllyaYalovyy@users.noreply.github.com
yalovyyi@amazon.com
35 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
examples/demo-wdl-project/workflows/haplotype/MANIFEST.json
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
examples/demo-nextflow-project/workflows/rnaseq/inputs.json
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
site/content/en/docs/Best practices/scalingworkloads.md
37.
2242982+ghawk1ns@users.noreply.github.com
yalovyyi@amazon.com
33 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
packages/common/Makefile
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
site/content/en/docs/Best practices/scalingworkloads.md
38.
yalovyyi@amazon.com
guyhawki@amazon.com
33 shared files
site/content/en/docs/Concepts/accounts.md
site/config.toml
site/content/en/docs/Concepts/workflows.md
packages/common/Makefile
site/content/en/community/_index.md
site/content/en/docs/Best practices/controllingcosts.md
site/content/en/docs/Concepts/namespaces.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Getting started/_index.md
site/content/en/docs/Best practices/_index.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/data.md
examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json
site/content/en/docs/Concepts/users.md
scripts/run-dev.sh
site/content/en/docs/Overview/_index.md
site/content/en/_index.html
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/logs.md
scripts/cli/install.sh
site/README.md
site/content/en/about/_index.html
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Examples/_index.md
site/content/en/docs/Concepts/_index.md
site/content/en/docs/Getting started/installation.md
site/content/en/docs/Best practices/scalingworkloads.md
39.
IllyaYalovyy@users.noreply.github.com
tneely@users.noreply.github.com
33 shared files
packages/cli/internal/pkg/aws/ddb/client.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/logging/prefix.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/logs_engine_test.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/logs_access_test.go
scripts/run-dev.sh
site/content/en/_index.html
packages/cli/internal/pkg/aws/cwl/interface.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init_test.go
packages/cli/internal/pkg/cli/project_init.go
packages/cli/go.mod
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
.github/workflows/github-pages.yaml
packages/cli/internal/pkg/cli/logs_adapter_test.go
packages/cli/cmd/application/template/macro.go
40.
braidn@amazon.com
7497012+a-li@users.noreply.github.com
33 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/osutils/utils_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/constructs/engines/engine.ts
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
41.
atahlil@amazon.com
tneely@users.noreply.github.com
32 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/package.json
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
CHANGELOG.md
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
packages/cli/internal/pkg/cli/configure_email.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
42.
tayneely@amazon.com
atahlil@amazon.com
27 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
.github/workflows/ci.yml
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/workflow/workflow_status.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
43.
30308260+abassyiouni@users.noreply.github.com
tneely@users.noreply.github.com
26 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/roles/policies/cromwell-batch-policy.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/context-stack.ts
packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts
44.
tneely@users.noreply.github.com
7497012+a-li@users.noreply.github.com
26 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/constructs/engines/engine.ts
packages/cli/internal/pkg/cli/logs_workflow_test.go
.versionrc
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
bump.sh
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
scripts/package-release.sh
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
45.
tneely@users.noreply.github.com
mrschre@amazon.com
25 shared files
examples/nf-core-project/agc-project.yaml
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/workflow.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
packages/cli/internal/pkg/cli/context_list_test.go
packages/cli/internal/pkg/storage/project_client.go
packages/cli/internal/pkg/mocks/manager/interfaces.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/go.mod
packages/cli/internal/pkg/cli/project.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
46.
7497012+a-li@users.noreply.github.com
atahlil@amazon.com
25 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
site/content/en/docs/Getting started/installation.md
version.json
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
47.
tayneely@amazon.com
93286759+aws-genomics-automation@users.noreply.github.com
24 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/flag.go
CHANGELOG.md
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/context_deploy_test.go
.github/workflows/ci.yml
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
48.
elliotsm@amazon.com
IllyaYalovyy@users.noreply.github.com
24 shared files
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/stream_logs.go
packages/cli/internal/pkg/cli/project_init.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/logs_core_test.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
49.
7497012+a-li@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
24 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/wes_api/client/model_log.go
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
50.
7497012+a-li@users.noreply.github.com
guyhawki@amazon.com
24 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/Makefile
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/wes_api/client/model_log.go
packages/cli/internal/pkg/cli/context_describe_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
51.
atahlil@amazon.com
elliotsm@amazon.com
22 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cdk/lib/constants.ts
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/aws/cwl/get_logs_test.go
packages/cli/internal/pkg/mocks/storage/interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/configure_email.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/internal/pkg/cli/workflow/workflow_status_test.go
packages/cli/internal/pkg/cli/configure_describe.go
52.
braidn@amazon.com
30308260+abassyiouni@users.noreply.github.com
20 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
53.
7497012+a-li@users.noreply.github.com
elliotsm@amazon.com
19 shared files
packages/cli/internal/pkg/cli/context_describe.go
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cdk/lib/util/index.ts
packages/cli/internal/pkg/cli/context_describe_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go
packages/cli/internal/pkg/cli/config/config_client.go
.github/PULL_REQUEST_TEMPLATE.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/osutils/utils.go
packages/cli/cmd/application/main.go
54.
30308260+abassyiouni@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
18 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
55.
braidn@amazon.com
IllyaYalovyy@users.noreply.github.com
18 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/workflow/workflow_run_test.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
scripts/cli/install.sh
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
56.
braidn@amazon.com
dovydenk@amazon.com
18 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
57.
mrschre@amazon.com
IllyaYalovyy@users.noreply.github.com
17 shared files
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
packages/cli/go.mod
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
58.
30308260+abassyiouni@users.noreply.github.com
guyhawki@amazon.com
17 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
59.
braidn@amazon.com
mrschre@amazon.com
17 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
60.
tayneely@amazon.com
30308260+abassyiouni@users.noreply.github.com
16 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/stacks/engines/batch-construct.ts
packages/cdk/lib/types/engine-options.ts
packages/cli/internal/pkg/cli/context_destroy.go
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/stacks/index.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
61.
93626953+anisatahlil@users.noreply.github.com
braidn@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
62.
93626953+anisatahlil@users.noreply.github.com
tayneely@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
63.
93626953+anisatahlil@users.noreply.github.com
atahlil@amazon.com
16 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/cli/configure_format_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/cmd/application/set_format.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/configure_format.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/cmd/application/set_format_test.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
64.
tayneely@amazon.com
7497012+a-li@users.noreply.github.com
16 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
packages/cli/internal/pkg/cli/logs_workflow_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
CHANGELOG.md
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/account_activate.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/workflow/workflow_tasks.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
65.
93286759+aws-genomics-automation@users.noreply.github.com
yalovyyi@amazon.com
15 shared files
site/content/en/docs/Concepts/accounts.md
site/content/en/docs/Concepts/workflows.md
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
scripts/run-dev.sh
site/content/en/_index.html
site/content/en/docs/Concepts/contexts.md
site/README.md
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
66.
tneely@users.noreply.github.com
dovydenk@amazon.com
15 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/core-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/context-stack.ts
67.
elliotsm@amazon.com
mrschre@amazon.com
15 shared files
site/content/en/docs/Concepts/workflows.md
packages/cli/internal/pkg/cli/context_list.go
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Getting started/helloworld.md
packages/cli/internal/pkg/cli/spec/project_test.go
packages/cli/internal/pkg/cli/context_deploy.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context/manager_list_test.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
68.
tayneely@amazon.com
IllyaYalovyy@users.noreply.github.com
14 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/aws/cdk/progress_test.go
packages/cli/internal/pkg/aws/cdk/deploy_app.go
packages/cli/internal/pkg/cli/account_activate_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
69.
waliag87@gmail.com
gwalia@amazon.com
13 shared files
packages/engines/snakemake/Dockerfile
packages/engines/snakemake/THIRD-PARTY
packages/engines/new-engine-template/THIRD-PARTY
packages/engines/new-engine-template/Dockerfile
packages/engines/snakemake/.gitignore
packages/engines/snakemake/README.md
packages/engines/snakemake/LICENSE
packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh
packages/engines/new-engine-template/.aws.sh
packages/engines/new-engine-template/buildspec.yml
packages/engines/snakemake/buildspec.yml
packages/engines/new-engine-template/DEVELOPMENT.MD
packages/engines/snakemake/snakemake.aws.sh
70.
dovydenk@amazon.com
30308260+abassyiouni@users.noreply.github.com
13 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts
packages/cdk/lib/stacks/engines/engine-construct.ts
packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
71.
atahlil@amazon.com
IllyaYalovyy@users.noreply.github.com
13 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
examples/demo-wdl-project/agc-project.yaml
packages/cli/internal/pkg/cli/workflow/manager.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cwl/stream_logs_test.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
site/content/en/docs/Concepts/contexts.md
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
72.
dovydenk@amazon.com
2242982+ghawk1ns@users.noreply.github.com
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/.eslintrc.js
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
73.
dovydenk@amazon.com
guyhawki@amazon.com
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/core-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/package.json
packages/cdk/lib/constants.ts
packages/cdk/lib/util/index.ts
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/.eslintrc.js
packages/cdk/package-lock.json
packages/cdk/tsconfig.json
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
packages/cdk/lib/stacks/context-stack.ts
74.
mrschre@amazon.com
30308260+abassyiouni@users.noreply.github.com
12 shared files
packages/cli/internal/pkg/cli/format/table.go
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/roles/nextflow-engine-role.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
packages/cdk/lib/stacks/context-stack.ts
75.
atahlil@amazon.com
30308260+abassyiouni@users.noreply.github.com
12 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts
packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/flag.go
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/lib/roles/cromwell-adapter-role.ts
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
76.
7497012+a-li@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
12 shared files
packages/cli/Makefile
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go
README.md
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/aws/cdk/execute_cdk.go
packages/cli/internal/pkg/aws/cdk/progress.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/internal/pkg/cli/config/config_client.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
77.
93626953+anisatahlil@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
12 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
78.
93626953+anisatahlil@users.noreply.github.com
guyhawki@amazon.com
12 shared files
packages/cli/internal/pkg/cli/config/io.go
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/config/config_client_test.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/internal/pkg/cli/config/config_client.go
packages/cli/internal/pkg/cli/config/config.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
79.
mrschre@amazon.com
yalovyyi@amazon.com
11 shared files
site/config.toml
site/content/en/docs/Concepts/workflows.md
site/content/en/community/_index.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Tutorials/_index.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/engines.md
site/content/en/docs/Concepts/contexts.md
site/content/en/docs/Concepts/projects.md
site/content/en/docs/Getting started/installation.md
80.
tayneely@amazon.com
mrschre@amazon.com
11 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/cli/spec/project_schema.json
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/mocks/manager/mock_interfaces.go
packages/cli/internal/pkg/cli/spec/io_test.go
packages/cli/internal/pkg/cli/context_deploy_test.go
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/cli/format/format.go
packages/cli/cmd/application/main.go
packages/cdk/lib/stacks/context-stack.ts
81.
7497012+a-li@users.noreply.github.com
dovydenk@amazon.com
11 shared files
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py
packages/cdk/lib/wes_adapter/requirements.txt
packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py
packages/cdk/lib/util/index.ts
packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py
packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py
packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts
packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts
packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts
82.
wleepang@gmail.com
2242982+ghawk1ns@users.noreply.github.com
10 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
83.
wleepang@gmail.com
guyhawki@amazon.com
10 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
84.
30308260+abassyiouni@users.noreply.github.com
elliotsm@amazon.com
9 shared files
packages/cli/internal/pkg/cli/workflow_describe.go
packages/cli/internal/pkg/cli/logs_workflow.go
packages/cli/internal/pkg/cli/context_destroy_test.go
packages/cli/internal/pkg/cli/context_deploy.go
packages/cli/internal/pkg/cli/logs_core.go
packages/cli/internal/pkg/cli/workflow_status.go
packages/cli/internal/pkg/cli/workflow_run.go
packages/cli/internal/pkg/cli/context_destroy.go
packages/cli/cmd/application/main.go
85.
mrschre@amazon.com
7497012+a-li@users.noreply.github.com
9 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts
packages/cli/internal/pkg/cli/flag.go
site/content/en/docs/Tutorials/walkthrough.md
packages/cli/internal/pkg/cli/types/context.go
packages/cli/internal/pkg/cli/describe_output_test.go
examples/gatk-best-practices-project-miniwdl/agc-project.yaml
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
86.
93286759+aws-genomics-automation@users.noreply.github.com
wleepang@gmail.com
9 shared files
site/content/en/docs/Getting started/setup.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
extras/agc-minimal-permissions/lib/policy-statements.ts
extras/agc-minimal-permissions/package-lock.json
extras/agc-minimal-permissions/lib/permissions-stack.ts
extras/agc-minimal-permissions/package.json
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
87.
7497012+a-li@users.noreply.github.com
dtzeng@users.noreply.github.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
88.
7497012+a-li@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
89.
dtzeng@users.noreply.github.com
dtzeng@amazon.com
8 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
90.
dtzeng@users.noreply.github.com
tneely@users.noreply.github.com
8 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/internal/pkg/logging/logging.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
91.
wleepang@gmail.com
IllyaYalovyy@users.noreply.github.com
7 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
92.
wleepang@gmail.com
yalovyyi@amazon.com
7 shared files
site/config.toml
site/content/en/docs/Getting started/setup.md
README.md
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Getting started/installation.md
.github/workflows/github-pages.yaml
93.
dtzeng@users.noreply.github.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
94.
dtzeng@users.noreply.github.com
93286759+aws-genomics-automation@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
95.
dtzeng@users.noreply.github.com
2242982+ghawk1ns@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
96.
dtzeng@amazon.com
braidn@amazon.com
7 shared files
packages/cli/internal/pkg/cli/flag.go
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/cli/context/manager_test.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
97.
dtzeng@users.noreply.github.com
IllyaYalovyy@users.noreply.github.com
7 shared files
packages/cli/internal/pkg/aws/cdk/progress.go
packages/cli/internal/pkg/mocks/aws/mock_interfaces.go
packages/cli/go.mod
site/content/en/docs/Getting started/installation.md
packages/cli/internal/pkg/cli/context/manager.go
packages/cli/cmd/application/main.go
packages/cli/go.sum
98.
elliotsm@amazon.com
yalovyyi@amazon.com
6 shared files
site/content/en/docs/Concepts/workflows.md
site/content/en/docs/Getting started/prerequisites.md
packages/cli/internal/pkg/cli/workflow/manager.go
site/content/en/docs/Getting started/helloworld.md
site/content/en/docs/Tutorials/walkthrough.md
site/content/en/docs/Concepts/contexts.md
99.
dovydenk@amazon.com
mrschre@amazon.com
6 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts
examples/demo-wdl-project/agc-project.yaml
packages/cdk/lib/stacks/nested/batch-stack.ts
packages/cdk/lib/roles/nextflow-adapter-role.ts
packages/cdk/package-lock.json
packages/cdk/lib/stacks/context-stack.ts
100.
93626953+anisatahlil@users.noreply.github.com
tneely@users.noreply.github.com
6 shared files
packages/cli/internal/pkg/cli/config/config_test.go
packages/cli/internal/pkg/storage/interfaces.go
packages/cli/internal/pkg/mocks/storage/mock_interfaces.go
packages/cli/internal/pkg/cli/configure.go
packages/cli/internal/pkg/cli/configure_describe_test.go
packages/cli/cmd/application/main.go
| Contributor 1 | Contributor 2 | # shared files | |
|---|---|---|---|
| 1. | 2242982+ghawk1ns@users.noreply.github.com | guyhawki@amazon.com |
455 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow/workflow_details.go packages/common/aws/s3/interface.go site/config.toml packages/common/aws/sts/get_account.go packages/wes_api/client/model_error_response.go examples/gatk-best-practices-project/workflow-diagrams/cram-to-bam.dot.png examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/options.json packages/common/aws/cfn/get_stack_status.go packages/common/aws/cfn/get_stack_exports.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/TESTING.md packages/common/aws/ecr/ecr_client_test.go packages/cli/internal/pkg/constants/product.go packages/common/aws/ddb/write_workflow_instance.go packages/cli/internal/pkg/wes/option/workflow_attachment.go packages/common/aws/cdk/append_context_arguments.go examples/gatk-best-practices-project/gatk4-germline-snps-indels/options.json site/content/en/docs/Concepts/workflows.md packages/common/aws/cwl/client.go packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/spec/data.go packages/wes_api/client/.travis.yml examples/gatk-best-practices-project/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json packages/cli/internal/pkg/storage/project_client_test.go packages/cli/internal/pkg/cli/context/manager_deploy.go examples/gatk-best-practices-project/workflow-diagrams/gatk4-basic-joint-genotyping.dot.png packages/cli/internal/pkg/cli/context/context_environment.go packages/common/aws/cdk/deploy_app.go examples/gatk-best-practices-project/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/cli/logs_adapter.go packages/common/Makefile packages/common/aws/cwl/stream_logs_test.go site/LICENSE packages/hello.go packages/common/aws/ddb/list_workflow_instances_by_name.go packages/wes_api/client/response.go packages/cli/internal/pkg/term/color/color_test.go packages/cli/LICENSE site/content/en/community/_index.md packages/wes_api/client/model_workflow_type_version.go packages/common/aws/cwl/stream_logs.go packages/cdk/apps/context/app.ts packages/common/aws/cdk/execute_cdk.go packages/common/aws/cdk/parse_output_test.go packages/cli/Makefile extras/agc-minimal-permissions/.npmignore packages/cdk/lib/types/compute-type.ts examples/gatk-best-practices-project/workflow-diagrams/gatk4-data-processing.dot packages/wes_api/client/api/openapi.yaml site/static/favicons/android-chrome-512x512.png packages/common/logging/prefix.go packages/wes_api/client/api_workflow_execution_service.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/spec/workflow.go site/content/en/docs/Best practices/controllingcosts.md packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/common/aws/ssm/client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/gatk-best-practices-project/workflow-diagrams/gatk4-germline-snps-indels.dot.png packages/common/aws/util/time.go site/content/en/docs/Concepts/namespaces.md buildspec.yml examples/demo-wdl-project/workflows/read/read.wdl site/layouts/404.html packages/cli/internal/pkg/cli/spec/project.go packages/cli/.dockerignore packages/cli/internal/pkg/cli/workflow/workflow_list_test.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json examples/demo-wdl-project/workflows/haplotype/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json packages/cli/internal/pkg/cli/project_test.go examples/gatk-best-practices-project/workflow-diagrams/paired-fastq-to-unmapped-bam.dot.png examples/demo-nextflow-project/agc-project.yaml examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/context/interface.go extras/agc-minimal-permissions/cdk.json packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/common/aws/ecr/Interface.go packages/wes_api/client/sigv4_client.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go README.md packages/cli/internal/pkg/cli/context_test.go packages/cdk/README.md packages/common/aws/ddb/list_workflow_instances_by_context.go packages/cli/internal/pkg/cli/spec/context.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/common/aws/provider.go examples/demo-wdl-project/workflows/hello/hello.wdl packages/common/aws/provider_test.go packages/common/internal/pkg/mocks/io/mock_interfaces.go ... |
| 2. | tneely@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
122 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cdk/apps/context/app.ts packages/cli/Makefile packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go buildspec.yml packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/cli/workflow/workflow_list_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/cli/context/common_test.go scripts/update-tags.sh packages/cli/internal/pkg/cli/context.go packages/cli/cmd/application/template/template.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go .gitignore packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/context/manager_status_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/cli/context_status_test.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/project_describe_test.go packages/cdk/lib/constructs/secure-service.ts packages/cli/internal/pkg/mocks/wes/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go packages/cli/internal/pkg/cli/configure.go scripts/run-dev.sh packages/cli/internal/pkg/mocks/wes/interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/cli/workflow/workflow_describe_test.go packages/cli/internal/pkg/cli/logs.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cdk/lib/env/core-app-parameters.ts packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod CONTRIBUTING.md packages/cli/internal/pkg/cli/workflow_status_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/awsresources/awsresources.go packages/cli/internal/pkg/cli/account_deactivate_test.go packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go ... |
| 3. | 93286759+aws-genomics-automation@users.noreply.github.com | atahlil@amazon.com |
119 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cdk/lib/wes_adapter/index.py examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py site/content/en/docs/Workflow engines/miniwdl.md packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/wes_adapter/rest_api/typing_utils.py examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py site/package-lock.json packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts site/themes/docsy packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md packages/cdk/lib/wes_adapter/rest_api/models/service_info.py examples/gatk-best-practices-project-miniwdl/README.md packages/cdk/lib/wes_adapter/rest_api/util.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cdk/lib/wes_adapter/rest_api/workflow/input.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/error_handling.py site/content/en/docs/Concepts/contexts.md packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json .github/workflows/ci.yml packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl ... |
| 4. | tneely@users.noreply.github.com | guyhawki@amazon.com |
116 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/wes/interface.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cdk/apps/context/app.ts packages/cli/Makefile packages/cli/internal/pkg/wes/Client.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go buildspec.yml packages/cli/internal/pkg/cli/workflow/workflow_list_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cdk/lib/constructs/api-proxy.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/cli/context/common_test.go scripts/update-tags.sh packages/cli/internal/pkg/cli/context.go packages/cli/cmd/application/template/template.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go .gitignore packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/context/manager_status_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/cli/context_status_test.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/project_describe_test.go packages/cdk/lib/constructs/secure-service.ts packages/cli/internal/pkg/mocks/wes/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go packages/cli/internal/pkg/cli/configure.go scripts/run-dev.sh packages/cli/internal/pkg/mocks/wes/interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/cli/workflow/workflow_describe_test.go packages/cli/internal/pkg/cli/logs.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cdk/lib/env/core-app-parameters.ts packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go CONTRIBUTING.md packages/cli/internal/pkg/cli/workflow_status_test.go packages/cli/internal/pkg/cli/awsresources/awsresources.go packages/cli/internal/pkg/cli/account_deactivate_test.go packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/context/manager_status.go packages/cdk/lib/env/index.ts ... |
| 5. | 93286759+aws-genomics-automation@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
97 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/Makefile packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts buildspec.yml packages/cli/internal/pkg/logging/prefix.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json packages/cdk/lib/constants.ts site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md .gitignore packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cdk/lib/constructs/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/logs_core.go extras/agc-minimal-permissions/package-lock.json scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go .github/workflows/codeql-analysis.yml packages/cli/internal/pkg/cli/context_destroy.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md extras/agc-minimal-permissions/package.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json site/README.md packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/constructs/batch.ts site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go packages/cli/internal/pkg/cli/logs_core_test.go Makefile packages/cdk/lib/types/index.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/cli/context/manager_info.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 6. | 93286759+aws-genomics-automation@users.noreply.github.com | mrschre@amazon.com |
94 shared files
packages/cli/internal/pkg/cli/context/manager_list.go packages/cli/internal/pkg/cli/format/table.go examples/nf-core-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cdk/lib/roles/cromwell-engine-role.ts examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json site/content/en/docs/Concepts/workflows.md site/content/en/docs/Workflow engines/_index.md examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json packages/cli/internal/pkg/cli/workflow_output.go examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json THIRD-PARTY packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/nf-core-project/workflows/rnaseq/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json site/content/en/docs/Workflow engines/miniwdl.md examples/demo-wdl-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/workflow/workflow_output.go packages/cli/internal/pkg/cli/workflow_output_test.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md examples/gatk-best-practices-project/README.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/project_validate_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_output_test.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/project_validate.go packages/cli/internal/pkg/cli/types/context.go site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl packages/cli/internal/pkg/cli/describe_output_test.go examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/nf-core-project/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl packages/cli/internal/pkg/mocks/manager/interfaces.go examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go site/content/en/docs/Concepts/projects.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl packages/cli/internal/pkg/cli/project.go examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl site/content/en/docs/Getting started/installation.md examples/nf-core-project/workflows/rnaseq/inputs.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/slices/slice_utils.go packages/cli/internal/pkg/slices/slice_utils_test.go |
| 7. | 93286759+aws-genomics-automation@users.noreply.github.com | guyhawki@amazon.com |
91 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/content/en/docs/Concepts/accounts.md packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go .go-version packages/cli/internal/pkg/cli/context/context_environment.go packages/cli/Makefile packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts buildspec.yml examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json packages/cdk/lib/constants.ts site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md .gitignore packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cdk/lib/constructs/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/logs_core.go extras/agc-minimal-permissions/package-lock.json scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md extras/agc-minimal-permissions/package.json packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json site/README.md packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cdk/lib/constructs/batch.ts site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go packages/cli/internal/pkg/cli/logs_core_test.go Makefile packages/cdk/lib/types/index.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/context/manager_info.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 8. | 93286759+aws-genomics-automation@users.noreply.github.com | tneely@users.noreply.github.com |
88 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go examples/nf-core-project/agc-project.yaml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/context_environment.go packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go buildspec.yml packages/cli/internal/pkg/logging/prefix.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go .versionrc packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cli/internal/pkg/mocks/io/mock_interfaces.go CHANGELOG.md .gitignore packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/cmd/application/description.go packages/cdk/lib/env/context-app-parameters.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go bump.sh packages/cli/internal/pkg/cli/logs_core.go scripts/run-dev.sh packages/cli/internal/pkg/cli/workflow_status.go site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/group/group.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/project.go Makefile packages/cli/internal/pkg/cli/account_activate_test.go scripts/package-release.sh packages/cli/internal/pkg/aws/cwl/get_logs.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cdk/lib/env/index.ts packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/cli/context/manager_info.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 9. | elliotsm@amazon.com | tneely@users.noreply.github.com |
86 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/aws/s3/bucket_exists.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/aws/ddb/get_workflow_instance_by_id.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cfn/get_stack_status.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_context.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cfn/list_stacks.go packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/aws/s3/upload_file.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/aws/ddb/list_workflows.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/batch/get_jobs.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/aws/sts/get_account.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/aws/ecr/image_listable.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/aws/cfn/get_stack_exports.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/ddb/list_workflow_instances_by_name.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/s3/sync_file.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cfn/delete_stack.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/aws/cwl/get_logs.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/aws/ecr/image_reference.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go packages/cli/internal/pkg/aws/ddb/write_workflow_instance.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 10. | elliotsm@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
71 shared files
packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/cli/spec/project.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/cli.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/clierror/cli_error.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 11. | elliotsm@amazon.com | guyhawki@amazon.com |
68 shared files
packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/logs_adapter.go packages/cli/internal/pkg/cli/spec/project.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context/common_test.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow_list.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/util/instance-types.ts site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go packages/cli/internal/pkg/cli/spec/io.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/cli.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/context/manager_info_test.go packages/cli/internal/pkg/cli/account_deactivate.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/project_init.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/clierror/cli_error.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/project_describe.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_engine.go packages/cli/internal/pkg/cli/logs_access.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 12. | braidn@amazon.com | tayneely@amazon.com |
64 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 13. | atahlil@amazon.com | dovydenk@amazon.com |
64 shared files
packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/package.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/.eslintrc.js packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl |
| 14. | 93286759+aws-genomics-automation@users.noreply.github.com | dovydenk@amazon.com |
64 shared files
packages/cdk/lib/wes_adapter/index.py packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/wes_adapter/rest_api/openapi/openapi.yaml packages/cdk/lib/wes_adapter/rest_api/models/default_workflow_engine_parameter.py packages/cdk/lib/wes_adapter/rest_api/models/run_status.py packages/cdk/lib/wes_adapter/rest_api/models/__init__.py packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/rest_api/models/base_model_.py packages/cdk/lib/wes_adapter/rest_api/models/run_id.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/wes_adapter/amazon_genomics/wes/__init__.py packages/cdk/lib/wes_adapter/rest_api/typing_utils.py packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/wes_adapter/rest_api/exception/Exceptions.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/NextflowWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/AbstractWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/constants.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/state.py packages/cdk/lib/wes_adapter/start-local-server.sh packages/cdk/lib/wes_adapter/format-code.sh packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/models/run_request.py packages/cdk/lib/wes_adapter/rest_api/exception/__init__.py packages/cdk/lib/wes_adapter/local-server.py packages/cdk/lib/wes_adapter/amazon_genomics/util/__init__.py packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/rest_api/models/run_list_response.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/wes_adapter/rest_api/encoder.py packages/cdk/lib/wes_adapter/rest_api/models/service_info.py packages/cdk/lib/wes_adapter/rest_api/util.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/wes_adapter/rest_api/__init__.py packages/cdk/lib/wes_adapter/init-local-server.sh packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/input.json packages/cdk/lib/wes_adapter/rest_api/models/workflow_type_version.py packages/cdk/lib/wes_adapter/rest_api/error_handling.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/verify_utils.py packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/config/__init__.py packages/cdk/lib/wes_adapter/rest_api/models/log.py packages/cdk/lib/wes_adapter/rest_api/models/run_log.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_NextflowWESAdapter.py packages/cdk/lib/wes_adapter/rest_api/models/error_response.py packages/cdk/lib/wes_adapter/amazon_genomics/__init__.py packages/cdk/lib/wes_adapter/README.md packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/wes_adapter/amazon_genomics/util/method_logger.py packages/cdk/lib/wes_adapter/rest_api/controllers/__init__.py packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/__init__.py packages/cdk/lib/wes_adapter/rest_api/workflow/sampleWorkFlow.wdl |
| 15. | tneely@users.noreply.github.com | braidn@amazon.com |
62 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 16. | 2242982+ghawk1ns@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
58 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/storage/project_client_test.go site/content/en/community/_index.md packages/cli/Makefile site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md packages/cli/internal/pkg/logging/prefix.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Concepts/logs.md scripts/cli/install.sh packages/cli/internal/pkg/cli/format/text_test.go site/README.md site/content/en/about/_index.html packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md packages/cli/internal/pkg/cli/logs_core_test.go site/content/en/docs/Concepts/_index.md packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go site/content/en/docs/Best practices/scalingworkloads.md |
| 17. | braidn@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
58 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cdk/Makefile packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go scripts/cli/install.sh packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cdk/lib/stacks/nested/nested-engine-stack.ts packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 18. | braidn@amazon.com | guyhawki@amazon.com |
55 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cdk/Makefile packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go scripts/cli/install.sh packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cdk/lib/stacks/nested/nested-engine-stack.ts packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cdk/lib/stacks/index.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 19. | 93286759+aws-genomics-automation@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
54 shared files
site/content/en/docs/Concepts/accounts.md site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/version/cache.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/version/replenish_func.go examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/version/cache_test.go packages/cli/internal/pkg/version/interfaces.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/version/store_test.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/version/version_check_result.go packages/cli/internal/pkg/version/store.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go examples/demo-wdl-project/workflows/words/MANIFEST.json scripts/run-dev.sh site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/version/checker.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/version/replenish_func_test.go site/README.md packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/version/check_func.go packages/cli/internal/pkg/version/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/version/info.go packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/version/checker_test.go packages/cli/internal/pkg/version/check_func_test.go examples/demo-wdl-project/workflows/read/main.wdl |
| 20. | IllyaYalovyy@users.noreply.github.com | guyhawki@amazon.com |
54 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md .go-version packages/cli/internal/pkg/storage/project_client_test.go site/content/en/community/_index.md packages/cli/Makefile site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md examples/demo-wdl-project/agc-project.yaml site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Concepts/logs.md scripts/cli/install.sh packages/cli/internal/pkg/cli/format/text_test.go site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md packages/cli/internal/pkg/cli/logs_core_test.go site/content/en/docs/Concepts/_index.md packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go site/content/en/docs/Best practices/scalingworkloads.md |
| 21. | 93286759+aws-genomics-automation@users.noreply.github.com | elliotsm@amazon.com |
50 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/cli/workflow_describe.go site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/mocks/io/mock_interfaces.go site/content/en/docs/Getting started/helloworld.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go .github/ISSUE_TEMPLATE/feature_request.md packages/cdk/lib/util/instance-types.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/io/interfaces.go .github/ISSUE_TEMPLATE/bug_report.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/PULL_REQUEST_TEMPLATE.md packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/aws/cwl/get_logs.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/context_status.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go |
| 22. | braidn@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
48 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constructs/engines/engine-job-definition.ts packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/roles/policies/head-job-batch-policy.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/environment/environment.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/roles/policies/batch-policies.ts packages/cdk/lib/constructs/batch.ts packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 23. | atahlil@amazon.com | mrschre@amazon.com |
47 shared files
examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/MANIFEST.json packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.inputs.json site/content/en/docs/Workflow engines/miniwdl.md examples/demo-wdl-project/agc-project.yaml examples/gatk-best-practices-project-miniwdl/gatk4-basic-joint-genotyping/MANIFEST.json packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts site/package-lock.json packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts site/themes/docsy examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.wdl packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Workflow engines/nextflow.md site/content/en/docs/Workflow engines/cromwell.md examples/gatk-best-practices-project-miniwdl/README.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/cram-to-bam/cram-to-bam.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/processing-for-variant-discovery-gatk4.wdl examples/gatk-best-practices-project-miniwdl/agc-project.yaml examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-inputs.json site/content/en/docs/Concepts/contexts.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/MANIFEST.json packages/cdk/package-lock.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/paired-fastq-to-unmapped-bam/paired-fastq-to-unmapped-bam.wdl examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-data-processing/MANIFEST.json examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bams.input.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.inputs.json examples/gatk-best-practices-project-miniwdl/seq-format-conversions/interleaved-fastq-to-paired-fastq/interleaved-fastq-to-paired-fastq.wdl examples/gatk-best-practices-project-miniwdl/seq-format-validation/validate-bam.wdl site/content/en/docs/Getting started/installation.md examples/gatk-best-practices-project-miniwdl/seq-format-conversions/bam-to-unmapped-bams/bam-to-unmapped-bams.inputs.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go examples/gatk-best-practices-project-miniwdl/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.wgs.inputs.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/MANIFEST.json examples/gatk-best-practices-project-miniwdl/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl |
| 24. | elliotsm@amazon.com | braidn@amazon.com |
46 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cdk/apps/core/app.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/npm-shrinkwrap.json packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/workflow/workflow_run.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 25. | mrschre@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
45 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_schema.json site/themes/docsy packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go site/content/en/docs/Concepts/contexts.md packages/cdk/package-lock.json packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 26. | tneely@users.noreply.github.com | tayneely@amazon.com |
44 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 27. | tayneely@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
43 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts packages/cli/internal/pkg/aws/cdk/new_client.go |
| 28. | mrschre@amazon.com | guyhawki@amazon.com |
42 shared files
packages/cli/internal/pkg/cli/context/manager_list.go site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/spec/context.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/types/workflow.go site/package-lock.json site/content/en/docs/Tutorials/_index.md packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context/info.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go examples/gatk-best-practices-project/gatk4-basic-joint-genotyping/gatk4-basic-joint-genotyping.wdl packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go examples/gatk-best-practices-project/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels.wdl packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/engines.md packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go site/content/en/docs/Concepts/contexts.md packages/cdk/package-lock.json packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go site/content/en/docs/Concepts/projects.md packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 29. | atahlil@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
41 shared files
packages/cli/Makefile packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json site/package-lock.json packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts site/themes/docsy packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cdk/.eslintrc.js site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/configure_describe.go |
| 30. | braidn@amazon.com | atahlil@amazon.com |
41 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/requirements.txt packages/cli/internal/pkg/storage/interfaces.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 31. | tayneely@amazon.com | guyhawki@amazon.com |
40 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 32. | atahlil@amazon.com | guyhawki@amazon.com |
40 shared files
packages/cli/Makefile packages/cli/internal/pkg/cli/config/io.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cli/internal/pkg/cli/config/config_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json site/package-lock.json packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go extras/agc-minimal-permissions/lib/policy-statements.ts packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go extras/agc-minimal-permissions/lib/permissions-stack.ts packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cdk/.eslintrc.js site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/config/config.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cli/internal/pkg/cli/configure_describe.go |
| 33. | 7497012+a-li@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
39 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go .versionrc packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md .github/semantic.yml packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py .github/workflows/stale_issue.yml packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py bump.sh packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/config/config_client.go .github/PULL_REQUEST_TEMPLATE.md scripts/package-release.sh site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 34. | elliotsm@amazon.com | tayneely@amazon.com |
38 shared files
packages/cli/internal/pkg/cli/context/manager_deploy.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/context/interface.go packages/cli/internal/pkg/cli/context/manager_deploy_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/context/util.go packages/cli/internal/pkg/aws/cdk/destroy_app.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/clear_context_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/mocks/context/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context/manager_destroy.go packages/cli/internal/pkg/aws/cdk/clear_context.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/aws/cdk/deploy_app_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager_destroy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/aws/cdk/destroy_app_test.go packages/cli/internal/pkg/aws/cdk/new_client.go |
| 35. | 93286759+aws-genomics-automation@users.noreply.github.com | 30308260+abassyiouni@users.noreply.github.com |
37 shared files
packages/cli/internal/pkg/cli/format/table.go packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/workflow_auto_complete.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/cli/logs_core.go scripts/context-deploy-benchmark/context-benchmark.sh packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/cli/workflow/interface.go packages/cli/internal/pkg/cli/workflow_auto_complete_test.go packages/cli/internal/pkg/cli/workflow_run.go scripts/context-deploy-benchmark/cromwell/agc-project.yaml packages/cli/internal/pkg/cli/context_destroy.go scripts/context-deploy-benchmark/nextflow/agc-project.yaml packages/cli/internal/pkg/cli/context_auto_complete_test.go packages/cli/internal/pkg/cli/context_auto_complete.go packages/cli/internal/pkg/mocks/workflow/mock_interfaces.go packages/cli/internal/pkg/cli/format/table_test.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cli/internal/pkg/mocks/workflow/interfaces.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 36. | IllyaYalovyy@users.noreply.github.com | yalovyyi@amazon.com |
35 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go examples/demo-wdl-project/workflows/haplotype/MANIFEST.json site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md examples/demo-nextflow-project/workflows/rnaseq/inputs.json site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml site/content/en/docs/Best practices/scalingworkloads.md |
| 37. | 2242982+ghawk1ns@users.noreply.github.com | yalovyyi@amazon.com |
33 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md packages/common/Makefile site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md site/content/en/docs/Best practices/scalingworkloads.md |
| 38. | yalovyyi@amazon.com | guyhawki@amazon.com |
33 shared files
site/content/en/docs/Concepts/accounts.md site/config.toml site/content/en/docs/Concepts/workflows.md packages/common/Makefile site/content/en/community/_index.md site/content/en/docs/Best practices/controllingcosts.md site/content/en/docs/Concepts/namespaces.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md README.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Getting started/_index.md site/content/en/docs/Best practices/_index.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/data.md examples/demo-nextflow-project/workflows/rnaseq/MANIFEST.json site/content/en/docs/Concepts/users.md scripts/run-dev.sh site/content/en/docs/Overview/_index.md site/content/en/_index.html site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/logs.md scripts/cli/install.sh site/README.md site/content/en/about/_index.html site/content/en/docs/Concepts/projects.md site/content/en/docs/Examples/_index.md site/content/en/docs/Concepts/_index.md site/content/en/docs/Getting started/installation.md site/content/en/docs/Best practices/scalingworkloads.md |
| 39. | IllyaYalovyy@users.noreply.github.com | tneely@users.noreply.github.com |
33 shared files
packages/cli/internal/pkg/aws/ddb/client.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/logging/prefix.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/logs_engine_test.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/logs_access_test.go scripts/run-dev.sh site/content/en/_index.html packages/cli/internal/pkg/aws/cwl/interface.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/workflow/workflow_stop_test.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init_test.go packages/cli/internal/pkg/cli/project_init.go packages/cli/go.mod packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum .github/workflows/github-pages.yaml packages/cli/internal/pkg/cli/logs_adapter_test.go packages/cli/cmd/application/template/macro.go |
| 40. | braidn@amazon.com | 7497012+a-li@users.noreply.github.com |
33 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/osutils/utils_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/constructs/engines/engine.ts packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context/manager_test.go packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 41. | atahlil@amazon.com | tneely@users.noreply.github.com |
32 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/package.json packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go CHANGELOG.md packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/mocks/storage/interfaces.go packages/cli/internal/pkg/cli/configure_email.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 42. | tayneely@amazon.com | atahlil@amazon.com |
27 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go .github/workflows/ci.yml packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/workflow/workflow_status.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 43. | 30308260+abassyiouni@users.noreply.github.com | tneely@users.noreply.github.com |
26 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/roles/policies/cromwell-batch-policy.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/context-stack.ts packages/cdk/lib/roles/policies/nextflow-adapter-batch-policy.ts |
| 44. | tneely@users.noreply.github.com | 7497012+a-li@users.noreply.github.com |
26 shared files
packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/constructs/engines/engine.ts packages/cli/internal/pkg/cli/logs_workflow_test.go .versionrc packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md bump.sh packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go scripts/package-release.sh site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 45. | tneely@users.noreply.github.com | mrschre@amazon.com |
25 shared files
examples/nf-core-project/agc-project.yaml packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/workflow.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go packages/cli/internal/pkg/cli/context_list_test.go packages/cli/internal/pkg/storage/project_client.go packages/cli/internal/pkg/mocks/manager/interfaces.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/go.mod packages/cli/internal/pkg/cli/project.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 46. | 7497012+a-li@users.noreply.github.com | atahlil@amazon.com |
25 shared files
packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts examples/gatk-best-practices-project-miniwdl/agc-project.yaml packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go site/content/en/docs/Getting started/installation.md version.json packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 47. | tayneely@amazon.com | 93286759+aws-genomics-automation@users.noreply.github.com |
24 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/flag.go CHANGELOG.md packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/context_deploy_test.go .github/workflows/ci.yml packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 48. | elliotsm@amazon.com | IllyaYalovyy@users.noreply.github.com |
24 shared files
site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/stream_logs.go packages/cli/internal/pkg/cli/project_init.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/logs_core_test.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 49. | 7497012+a-li@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
24 shared files
packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/wes_api/client/model_log.go packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 50. | 7497012+a-li@users.noreply.github.com | guyhawki@amazon.com |
24 shared files
packages/cli/internal/pkg/cli/context_describe.go packages/cli/Makefile packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/wes_api/client/model_log.go packages/cli/internal/pkg/cli/context_describe_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/workflow/workflow_tasks_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 51. | atahlil@amazon.com | elliotsm@amazon.com |
22 shared files
packages/cli/internal/pkg/aws/cfn/stack_filters.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cdk/lib/constants.ts packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/aws/cwl/get_logs_test.go packages/cli/internal/pkg/mocks/storage/interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/configure_email.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/internal/pkg/cli/workflow/workflow_status_test.go packages/cli/internal/pkg/cli/configure_describe.go |
| 52. | braidn@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
20 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 53. | 7497012+a-li@users.noreply.github.com | elliotsm@amazon.com |
19 shared files
packages/cli/internal/pkg/cli/context_describe.go packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cdk/lib/util/index.ts packages/cli/internal/pkg/cli/context_describe_test.go packages/cli/internal/pkg/cli/context/manager_test.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/zipfile/compress_to_tmp.go packages/cli/internal/pkg/cli/config/config_client.go .github/PULL_REQUEST_TEMPLATE.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/osutils/utils.go packages/cli/cmd/application/main.go |
| 54. | 30308260+abassyiouni@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
18 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 55. | braidn@amazon.com | IllyaYalovyy@users.noreply.github.com |
18 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/workflow/workflow_run_test.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go scripts/cli/install.sh packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 56. | braidn@amazon.com | dovydenk@amazon.com |
18 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 57. | mrschre@amazon.com | IllyaYalovyy@users.noreply.github.com |
17 shared files
site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md packages/cli/go.mod site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 58. | 30308260+abassyiouni@users.noreply.github.com | guyhawki@amazon.com |
17 shared files
packages/cli/internal/pkg/cli/workflow_describe.go packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 59. | braidn@amazon.com | mrschre@amazon.com |
17 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context_deploy_test.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 60. | tayneely@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
16 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/stacks/engines/batch-construct.ts packages/cdk/lib/types/engine-options.ts packages/cli/internal/pkg/cli/context_destroy.go packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/stacks/index.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 61. | 93626953+anisatahlil@users.noreply.github.com | braidn@amazon.com |
16 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 62. | 93626953+anisatahlil@users.noreply.github.com | tayneely@amazon.com |
16 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 63. | 93626953+anisatahlil@users.noreply.github.com | atahlil@amazon.com |
16 shared files
packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/cli/configure_format_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/cmd/application/set_format.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/configure_format.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/cmd/application/set_format_test.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 64. | tayneely@amazon.com | 7497012+a-li@users.noreply.github.com |
16 shared files
packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go packages/cli/internal/pkg/cli/logs_workflow_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go CHANGELOG.md packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/account_activate.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/workflow/workflow_tasks.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 65. | 93286759+aws-genomics-automation@users.noreply.github.com | yalovyyi@amazon.com |
15 shared files
site/content/en/docs/Concepts/accounts.md site/content/en/docs/Concepts/workflows.md site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md scripts/run-dev.sh site/content/en/_index.html site/content/en/docs/Concepts/contexts.md site/README.md site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 66. | tneely@users.noreply.github.com | dovydenk@amazon.com |
15 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/core-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/util/index.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/context-stack.ts |
| 67. | elliotsm@amazon.com | mrschre@amazon.com |
15 shared files
site/content/en/docs/Concepts/workflows.md packages/cli/internal/pkg/cli/context_list.go packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Getting started/helloworld.md packages/cli/internal/pkg/cli/spec/project_test.go packages/cli/internal/pkg/cli/context_deploy.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context/manager_list_test.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/clierror/actionableerror/mappings.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 68. | tayneely@amazon.com | IllyaYalovyy@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/aws/cdk/progress_test.go packages/cli/internal/pkg/aws/cdk/deploy_app.go packages/cli/internal/pkg/cli/account_activate_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 69. | waliag87@gmail.com | gwalia@amazon.com |
13 shared files
packages/engines/snakemake/Dockerfile packages/engines/snakemake/THIRD-PARTY packages/engines/new-engine-template/THIRD-PARTY packages/engines/new-engine-template/Dockerfile packages/engines/snakemake/.gitignore packages/engines/snakemake/README.md packages/engines/snakemake/LICENSE packages/cdk/lib/artifacts/batch-artifacts/ecs-additions/get-amazon-ebs-autoscale.sh packages/engines/new-engine-template/ packages/engines/new-engine-template/buildspec.yml packages/engines/snakemake/buildspec.yml packages/engines/new-engine-template/DEVELOPMENT.MD packages/engines/snakemake/snakemake.aws.sh |
| 70. | dovydenk@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
13 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/stacks/engines/cromwell-engine-construct.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cdk/lib/stacks/engines/nextflow-engine-construct.ts packages/cdk/lib/stacks/engines/engine-construct.ts packages/cdk/lib/stacks/engines/miniwdl-engine-construct.ts packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 71. | atahlil@amazon.com | IllyaYalovyy@users.noreply.github.com |
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packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go examples/demo-wdl-project/agc-project.yaml packages/cli/internal/pkg/cli/workflow/manager.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cwl/stream_logs_test.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go site/content/en/docs/Concepts/contexts.md packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 72. | dovydenk@amazon.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/util/index.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/.eslintrc.js packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 73. | dovydenk@amazon.com | guyhawki@amazon.com |
13 shared files
packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/core-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/package.json packages/cdk/lib/constants.ts packages/cdk/lib/util/index.ts packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/.eslintrc.js packages/cdk/package-lock.json packages/cdk/tsconfig.json packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts packages/cdk/lib/stacks/context-stack.ts |
| 74. | mrschre@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
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packages/cli/internal/pkg/cli/format/table.go packages/cdk/lib/roles/cromwell-engine-role.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/roles/nextflow-engine-role.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cli/go.sum packages/cdk/lib/stacks/context-stack.ts |
| 75. | atahlil@amazon.com | 30308260+abassyiouni@users.noreply.github.com |
12 shared files
packages/cdk/lib/roles/policies/nextflow-engine-batch-policy.ts packages/cdk/lib/roles/policies/nextflow-submit-job-batch-policy.ts packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts packages/cdk/lib/stacks/nested/batch-stack.ts packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/flag.go packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/lib/roles/cromwell-adapter-role.ts packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/roles/policies/nextflow-describe-jobs-batch-policy.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 76. | 7497012+a-li@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
12 shared files
packages/cli/Makefile packages/cli/internal/pkg/aws/cdk/execute_cdk_test.go README.md packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/aws/cdk/execute_cdk.go packages/cli/internal/pkg/aws/cdk/progress.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/internal/pkg/cli/config/config_client.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 77. | 93626953+anisatahlil@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 78. | 93626953+anisatahlil@users.noreply.github.com | guyhawki@amazon.com |
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packages/cli/internal/pkg/cli/config/io.go packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/config/config_client_test.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/internal/pkg/cli/config/config_client.go packages/cli/internal/pkg/cli/config/config.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go |
| 79. | mrschre@amazon.com | yalovyyi@amazon.com |
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site/config.toml site/content/en/docs/Concepts/workflows.md site/content/en/community/_index.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Tutorials/_index.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/engines.md site/content/en/docs/Concepts/contexts.md site/content/en/docs/Concepts/projects.md site/content/en/docs/Getting started/installation.md |
| 80. | tayneely@amazon.com | mrschre@amazon.com |
11 shared files
packages/cdk/lib/roles/cromwell-engine-role.ts packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/cli/spec/project_schema.json packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/mocks/manager/mock_interfaces.go packages/cli/internal/pkg/cli/spec/io_test.go packages/cli/internal/pkg/cli/context_deploy_test.go packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/cli/format/format.go packages/cli/cmd/application/main.go packages/cdk/lib/stacks/context-stack.ts |
| 81. | 7497012+a-li@users.noreply.github.com | dovydenk@amazon.com |
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packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/MiniWdlWESAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_BatchAdapter.py packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/CromwellWESAdapter.py packages/cdk/lib/wes_adapter/requirements.txt packages/cdk/lib/wes_adapter/amazon_genomics/wes/adapters/BatchAdapter.py packages/cdk/lib/util/index.ts packages/cdk/lib/wes_adapter/rest_api/controllers/workflow_execution_service_controller.py packages/cdk/lib/wes_adapter/amazon_genomics/tests/test_MiniwdlWESAdapter.py packages/cdk/lib/constructs/engines/nextflow/nextflow-engine.ts packages/cdk/lib/stacks/nested/miniwdl-engine-stack.ts packages/cdk/lib/stacks/nested/nextflow-engine-stack.ts |
| 82. | wleepang@gmail.com | 2242982+ghawk1ns@users.noreply.github.com |
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site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md |
| 83. | wleepang@gmail.com | guyhawki@amazon.com |
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site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md |
| 84. | 30308260+abassyiouni@users.noreply.github.com | elliotsm@amazon.com |
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packages/cli/internal/pkg/cli/workflow_describe.go packages/cli/internal/pkg/cli/logs_workflow.go packages/cli/internal/pkg/cli/context_destroy_test.go packages/cli/internal/pkg/cli/context_deploy.go packages/cli/internal/pkg/cli/logs_core.go packages/cli/internal/pkg/cli/workflow_status.go packages/cli/internal/pkg/cli/workflow_run.go packages/cli/internal/pkg/cli/context_destroy.go packages/cli/cmd/application/main.go |
| 85. | mrschre@amazon.com | 7497012+a-li@users.noreply.github.com |
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packages/cdk/lib/constructs/engines/miniwdl/miniwdl-engine.ts packages/cli/internal/pkg/cli/flag.go site/content/en/docs/Tutorials/walkthrough.md packages/cli/internal/pkg/cli/types/context.go packages/cli/internal/pkg/cli/describe_output_test.go examples/gatk-best-practices-project-miniwdl/agc-project.yaml site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 86. | 93286759+aws-genomics-automation@users.noreply.github.com | wleepang@gmail.com |
9 shared files
site/content/en/docs/Getting started/setup.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md extras/agc-minimal-permissions/lib/policy-statements.ts extras/agc-minimal-permissions/package-lock.json extras/agc-minimal-permissions/lib/permissions-stack.ts extras/agc-minimal-permissions/package.json site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 87. | 7497012+a-li@users.noreply.github.com | dtzeng@users.noreply.github.com |
8 shared files
packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 88. | 7497012+a-li@users.noreply.github.com | dtzeng@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 89. | dtzeng@users.noreply.github.com | dtzeng@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go |
| 90. | dtzeng@users.noreply.github.com | tneely@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/internal/pkg/logging/logging.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 91. | wleepang@gmail.com | IllyaYalovyy@users.noreply.github.com |
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site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 92. | wleepang@gmail.com | yalovyyi@amazon.com |
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site/config.toml site/content/en/docs/Getting started/setup.md README.md site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Getting started/installation.md .github/workflows/github-pages.yaml |
| 93. | dtzeng@users.noreply.github.com | braidn@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 94. | dtzeng@users.noreply.github.com | 93286759+aws-genomics-automation@users.noreply.github.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 95. | dtzeng@users.noreply.github.com | 2242982+ghawk1ns@users.noreply.github.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 96. | dtzeng@amazon.com | braidn@amazon.com |
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packages/cli/internal/pkg/cli/flag.go packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/cli/context/manager_test.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go |
| 97. | dtzeng@users.noreply.github.com | IllyaYalovyy@users.noreply.github.com |
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packages/cli/internal/pkg/aws/cdk/progress.go packages/cli/internal/pkg/mocks/aws/mock_interfaces.go packages/cli/go.mod site/content/en/docs/Getting started/installation.md packages/cli/internal/pkg/cli/context/manager.go packages/cli/cmd/application/main.go packages/cli/go.sum |
| 98. | elliotsm@amazon.com | yalovyyi@amazon.com |
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site/content/en/docs/Concepts/workflows.md site/content/en/docs/Getting started/prerequisites.md packages/cli/internal/pkg/cli/workflow/manager.go site/content/en/docs/Getting started/helloworld.md site/content/en/docs/Tutorials/walkthrough.md site/content/en/docs/Concepts/contexts.md |
| 99. | dovydenk@amazon.com | mrschre@amazon.com |
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packages/cdk/lib/stacks/nested/cromwell-engine-stack.ts examples/demo-wdl-project/agc-project.yaml packages/cdk/lib/stacks/nested/batch-stack.ts packages/cdk/lib/roles/nextflow-adapter-role.ts packages/cdk/package-lock.json packages/cdk/lib/stacks/context-stack.ts |
| 100. | 93626953+anisatahlil@users.noreply.github.com | tneely@users.noreply.github.com |
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packages/cli/internal/pkg/cli/config/config_test.go packages/cli/internal/pkg/storage/interfaces.go packages/cli/internal/pkg/mocks/storage/mock_interfaces.go packages/cli/internal/pkg/cli/configure.go packages/cli/internal/pkg/cli/configure_describe_test.go packages/cli/cmd/application/main.go |