aws / amazon-genomics-cli
Duplication

Places in code with 6 or more lines that are exactly the same.

Intro
  • For duplication, we look at places in code where there are 6 or more lines of code that are exactly the same.
  • Before duplication is calculated, the code is cleaned to remove empty lines, comments, and frequently duplicated constructs such as imports.
  • You should aim at having as little as possible (<5%) of duplicated code as high-level of duplication can lead to maintenance difficulties, poor factoring, and logical contradictions.
Learn more...
Duplication Overall
  • 14% duplication:
    • 12,808 cleaned lines of cleaned code (without empty lines, comments, and frequently duplicated constructs such as imports)
    • 1,906 duplicated lines
  • 185 duplicates
system14% (1,906 lines)
Duplication per Extension
yaml93% (1,324 lines)
ts10% (253 lines)
go2% (205 lines)
py8% (124 lines)
Duplication per Component (primary)
packages/cdk25% (977 lines)
packages/wes_api57% (662 lines)
packages/cli3% (205 lines)
extras/agc-minimal-permissions8% (62 lines)
site/static0% (0 lines)
site/assets0% (0 lines)
site0% (0 lines)
site/content0% (0 lines)
site/layouts0% (0 lines)
ROOT0% (0 lines)
packages/engines0% (0 lines)
scripts/context-deploy-benchmark0% (0 lines)

Duplication Between Components (50+ lines)

G packages/cdk packages/cdk packages/wes_api packages/wes_api packages/cdk--packages/wes_api 1324

Download: SVG DOT (open online Graphviz editor)

Open 3D force graph...

Show more details on duplication between components...
Longest Duplicates
The list of 20 longest duplicates.
See data for all 185 duplicates...
Size#FoldersFilesLinesCode
364 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 334:697 (52%)
327:690 (53%)
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56 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 92:147 (8%)
131:186 (8%)
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54 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 16:69 (7%)
57:110 (7%)
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41 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 202:242 (5%)
239:279 (5%)
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41 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 250:290 (5%)
286:326 (5%)
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41 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 157:197 (5%)
195:235 (5%)
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36 x 2 packages/cli/internal/pkg/mocks/manager
packages/cli/internal/pkg/mocks/workflow
mock_interfaces.go
mock_interfaces.go
 83:139 (48%)
83:139 (45%)
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35 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 298:332 (5%)
14:48 (5%)
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25 x 2 packages/wes_api/client/api
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 251:275 (3%)
298:322 (3%)
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25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 262:286 (3%)
251:275 (3%)
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25 x 2 packages/wes_api/client/api
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 20:44 (3%)
158:182 (3%)
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25 x 2 packages/wes_api/client/api
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 82:106 (3%)
158:182 (3%)
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25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/cdk/lib/wes_adapter/rest_api/openapi
openapi.yaml
openapi.yaml
 41:65 (3%)
304:328 (3%)
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25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/cdk/lib/wes_adapter/rest_api/openapi
openapi.yaml
openapi.yaml
 214:238 (3%)
262:286 (3%)
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25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 304:328 (3%)
158:182 (3%)
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25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/cdk/lib/wes_adapter/rest_api/openapi
openapi.yaml
openapi.yaml
 119:143 (3%)
304:328 (3%)
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25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 119:143 (3%)
82:106 (3%)
 view
25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 304:328 (3%)
82:106 (3%)
 view
25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 119:143 (3%)
20:44 (3%)
 view
25 x 2 packages/cdk/lib/wes_adapter/rest_api/openapi
packages/wes_api/client/api
openapi.yaml
openapi.yaml
 214:238 (3%)
298:322 (3%)
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Duplicated Units
The list of top 18 duplicated units.
See data for all 18 unit duplicates...
Size#FoldersFilesLinesCode
10 x 2 packages/cdk/lib/stacks/engines
packages/cdk/lib/stacks/engines
batch-construct.ts
miniwdl-engine-construct.ts
 59:69 
117:127 
 view
10 x 2 packages/cli/internal/pkg/cli/context
packages/cli/internal/pkg/cli/workflow
manager.go
manager.go
 134:144 
377:388 
 view
10 x 2 extras/agc-minimal-permissions/lib
extras/agc-minimal-permissions/lib
policy-statements.ts
policy-statements.ts
 105:117 
345:375 
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8 x 4 packages/cdk/lib/wes_ada...n_genomics/wes/adapters
packages/cdk/lib/wes_ada...n_genomics/wes/adapters
packages/cdk/lib/wes_ada...n_genomics/wes/adapters
packages/cdk/lib/wes_ada...n_genomics/wes/adapters
MiniWdlWESAdapter.py
CromwellWESAdapter.py
NextflowWESAdapter.py
BatchAdapter.py
 0:0 
0:0 
0:0 
0:0 
 view
7 x 2 extras/agc-minimal-permissions/lib
extras/agc-minimal-permissions/lib
policy-statements.ts
policy-statements.ts
 150:157 
203:210 
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7 x 2 extras/agc-minimal-permissions/lib
extras/agc-minimal-permissions/lib
policy-statements.ts
policy-statements.ts
 607:624 
678:703 
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6 x 2 packages/cli/internal/pkg/mocks/manager
packages/cli/internal/pkg/mocks/workflow
mock_interfaces.go
mock_interfaces.go
 53:59 
38:44 
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6 x 2 packages/cli/internal/pkg/mocks/manager
packages/cli/internal/pkg/mocks/workflow
mock_interfaces.go
mock_interfaces.go
 83:89 
83:89 
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6 x 2 packages/cli/internal/pkg/mocks/manager
packages/cli/internal/pkg/mocks/workflow
mock_interfaces.go
mock_interfaces.go
 98:104 
98:104 
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6 x 2 packages/cli/internal/pkg/mocks/manager
packages/cli/internal/pkg/mocks/workflow
mock_interfaces.go
mock_interfaces.go
 113:119 
113:119 
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6 x 2 packages/cli/internal/pkg/mocks/manager
packages/cli/internal/pkg/mocks/workflow
mock_interfaces.go
mock_interfaces.go
 128:134 
128:134 
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6 x 2 packages/cli/internal/pkg/mocks/aws
packages/cli/internal/pkg/mocks/aws
mock_interfaces.go
mock_interfaces.go
 60:66 
75:81 
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6 x 4 packages/cli/internal/pkg/mocks/aws
packages/cli/internal/pkg/mocks/aws
packages/cli/internal/pkg/mocks/storage
packages/cli/internal/pkg/mocks/io
mock_interfaces.go
mock_interfaces.go
mock_interfaces.go
mock_interfaces.go
 222:228 
275:281 
53:59 
112:118 
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6 x 2 packages/cli/internal/pkg/mocks/aws
packages/cli/internal/pkg/mocks/aws
mock_interfaces.go
mock_interfaces.go
 343:349 
373:379 
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6 x 2 packages/cli/internal/pkg/mocks/io
packages/cli/internal/pkg/mocks/io
mock_interfaces.go
mock_interfaces.go
 54:60 
188:194 
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6 x 2 extras/agc-minimal-permissions/lib
extras/agc-minimal-permissions/lib
policy-statements.ts
policy-statements.ts
 292:298 
308:314 
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6 x 2 extras/agc-minimal-permissions/lib
extras/agc-minimal-permissions/lib
policy-statements.ts
policy-statements.ts
 486:499 
716:735 
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10 x 2 packages/cdk/lib/wes_ada...n_genomics/wes/adapters
packages/cdk/lib/wes_ada...n_genomics/wes/adapters
MiniWdlWESAdapter.py
NextflowWESAdapter.py
 0:0 
0:0 
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