anthropics / life-sciences
File Age & Freshness

File age measurements show the distribution of file ages (days since the first commit) and the file freshness (days since the latest commit).

Summary
  • Number of files: 30
  • Daily file updates (only one update per file and date counted): 153
  • First update: 2025-10-17
  • Latest update: 2026-05-08
  • Days between first and latest update: 204 (29 weeks, estimated 145 working days)
  • Active days (at least one file change): 16
  • Data:
File Change History Overall
File Age Distribution Overall
Days since first update
  • There are 30 files with 7,013 lines of code in files.
    • 0 files that are 366+ days old (0 lines of code)
    • 3 files that are 181-365 days old (388 lines of code)
    • 27 files that are 91-180 days old (6,625 lines of code)
    • 0 files that are 31-90 days old (0 lines of code)
    • 0 files that are 1-30 days old (0 lines of code)
0% | 5% | 94% | 0% | 0%
Legend:
366+
181-365
91-180
31-90
1-30

explore: grouped by folders | grouped by age
File Freshness Distribution Overall
Days since last update
  • There are 30 files with 7,013 lines of code in files.
    • 0 files have been last changed 366+ days ago (0 lines of code)
    • 3 files have been last changed 181-365 days ago (388 lines of code)
    • 27 files have been last changed 91-180 days ago (6,625 lines of code)
    • 0 files have been last changed 31-90 days ago (0 lines of code)
    • 0 files have been last changed 1-30 days ago (0 lines of code)
0% | 5% | 94% | 0% | 0%
Legend:
366+
181-365
91-180
31-90
1-30

explore: grouped by folders | grouped by freshness
File Change History per File Extension
md, py, json, txt, yaml, gitignore
File Age Distribution per Extension
Days since first update
366+
181-365
91-180
31-90
1-30
py0% | 6% | 93% | 0% | 0%
yaml0% | 0% | 100% | 0% | 0%
File Freshness Distribution per Extension
Days since last update
366+
181-365
91-180
31-90
1-30
py0% | 6% | 93% | 0% | 0%
yaml0% | 0% | 100% | 0% | 0%
File Change History per Logical Decomposition
primary
primary (file age distribution)
Days since first update
366+
181-365
91-180
31-90
1-30
single-cell-rna-qc0% | 100% | 0% | 0% | 0%
nextflow-development0% | 0% | 100% | 0% | 0%
instrument-data-to-allotrope0% | 0% | 100% | 0% | 0%
scvi-tools0% | 0% | 100% | 0% | 0%
clinical-trial-protocol-skill0% | 0% | 100% | 0% | 0%
primary (file freshness distribution)
Days since last update
366+
181-365
91-180
31-90
1-30
single-cell-rna-qc0% | 100% | 0% | 0% | 0%
nextflow-development0% | 0% | 100% | 0% | 0%
instrument-data-to-allotrope0% | 0% | 100% | 0% | 0%
scvi-tools0% | 0% | 100% | 0% | 0%
clinical-trial-protocol-skill0% | 0% | 100% | 0% | 0%
Oldest Files (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
Files Not Recently Changed (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
Most Recently Created Files (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
Most Recently Changed Files (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com