| anthropics / life-sciences Temporal Dependencies |
A temporal dependency occurs when developers change two or more files at the same time (i.e. they are a part of the same commit).
Dependencies between files in same commits
The number on the lines shows the number of shared commits.
No temporal dependencies found.
Dependencies between components in same commits (primary)
The number on the lines shows the number of shared commits.
No temporal dependencies found.
No file pairs changed together.
Dependencies between files in same commits
The number on the lines shows the number of shared commits.
No temporal dependencies found.
Dependencies between components in same commits (primary)
The number on the lines shows the number of shared commits.
No temporal dependencies found.
No file pairs changed together.
Dependencies between files in same commits
The number on the lines shows the number of shared commits.
Dependencies between components in same commits (primary)
The number on the lines shows the number of shared commits.
flowchart TB
n0["scvi-tools"]
n1["nextflow-development"]
n2["instrument-data-to-allotrope"]
n0 ---|"4"| n0
n1 ---|"2"| n1
n2 ---|"2"| n2
classDef default fill:#00b2ee,stroke:#ffffff,color:#000000;
classDef highlighted fill:#00b2ee,stroke:#ffffff,color:#000000;
linkStyle 0 stroke:#a0a0a093,stroke-width:4px
linkStyle 1 stroke:#a0a0a070,stroke-width:2px
linkStyle 2 stroke:#a0a0a070,stroke-width:2px
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Files Most Frequently Changed Together (Top 50)
| Pairs | # same commits | # commits 1 | # commits 2 | latest commit |
|---|---|---|---|---|
| scvi-tools/scripts/prepare_data.py scvi-tools/scripts/model_utils.py |
4 | 4 (100%) | 4 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/__init__.py nextflow-development/scripts/config/pipelines/atacseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| instrument-data-to-allotrope/scripts/validate_asm.py instrument-data-to-allotrope/scripts/flatten_asm.py |
2 | 2 (100%) | 2 (100%) | 2026-01-08 |
| nextflow-development/scripts/detect_data_type.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/train_model.py scvi-tools/scripts/cluster_embed.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/sra_geo_fetch.py nextflow-development/scripts/check_environment.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/transfer_labels.py scvi-tools/scripts/model_utils.py |
2 | 2 (100%) | 4 (50%) | 2026-01-09 |
| scvi-tools/scripts/prepare_data.py scvi-tools/scripts/cluster_embed.py |
2 | 4 (50%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/config/pipelines/sarek.yaml nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/manage_genomes.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/detect_data_type.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/manage_genomes.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/__init__.py nextflow-development/scripts/sra_geo_fetch.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/check_environment.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/model_utils.py scvi-tools/scripts/cluster_embed.py |
2 | 4 (50%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/manage_genomes.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/sra_geo_fetch.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/validators.py nextflow-development/scripts/utils/sample_inference.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/sra_geo_fetch.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/manage_genomes.py nextflow-development/scripts/generate_samplesheet.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/integrate_datasets.py scvi-tools/scripts/cluster_embed.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/train_model.py scvi-tools/scripts/integrate_datasets.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/utils/__init__.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/utils/file_discovery.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/validators.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/validate_adata.py scvi-tools/scripts/prepare_data.py |
2 | 2 (100%) | 4 (50%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/manage_genomes.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| instrument-data-to-allotrope/scripts/flatten_asm.py instrument-data-to-allotrope/scripts/convert_to_asm.py |
2 | 2 (100%) | 2 (100%) | 2026-01-08 |
| nextflow-development/scripts/utils/__init__.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/transfer_labels.py scvi-tools/scripts/train_model.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| instrument-data-to-allotrope/scripts/export_parser.py instrument-data-to-allotrope/scripts/convert_to_asm.py |
2 | 2 (100%) | 2 (100%) | 2026-01-08 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/manage_genomes.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/validators.py nextflow-development/scripts/utils/__init__.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/detect_data_type.py nextflow-development/scripts/check_environment.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/generate_samplesheet.py nextflow-development/scripts/detect_data_type.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/validators.py nextflow-development/scripts/check_environment.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/sra_geo_fetch.py nextflow-development/scripts/generate_samplesheet.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| instrument-data-to-allotrope/scripts/validate_asm.py instrument-data-to-allotrope/scripts/convert_to_asm.py |
2 | 2 (100%) | 2 (100%) | 2026-01-08 |
| nextflow-development/scripts/config/genomes.yaml nextflow-development/scripts/check_environment.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/config/pipelines/atacseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/manage_genomes.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/sra_geo_fetch.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/detect_data_type.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/generate_samplesheet.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| scvi-tools/scripts/differential_expression.py scvi-tools/scripts/cluster_embed.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
Files from Different Folders Most Frequently Changed Together (Top 20)
| Pairs | # same commits | # commits 1 | # commits 2 | latest commit |
|---|---|---|---|---|
| nextflow-development/scripts/utils/__init__.py nextflow-development/scripts/config/pipelines/atacseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/detect_data_type.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/config/pipelines/sarek.yaml nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/manage_genomes.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/detect_data_type.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/manage_genomes.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/__init__.py nextflow-development/scripts/sra_geo_fetch.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/check_environment.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/manage_genomes.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/sra_geo_fetch.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/sra_geo_fetch.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/validators.py nextflow-development/scripts/config/genomes.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/ncbi_utils.py nextflow-development/scripts/manage_genomes.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/__init__.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/config/pipelines/rnaseq.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/sample_inference.py nextflow-development/scripts/manage_genomes.py |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |
| nextflow-development/scripts/utils/file_discovery.py nextflow-development/scripts/config/pipelines/sarek.yaml |
2 | 2 (100%) | 2 (100%) | 2026-01-09 |