sandbox/simstream/simstream/simstream.py (12 lines):
	- line 76: # TODO: Read in config
	- line 77: # TODO: Set up configuration dict
	- line 84: # TODO: Create new MessageParser
	- line 85: # TODO: Run message through MessageParser
	- line 86: # TODO: Route message to the correct DataReporter/EventMonitor
	- line 116: # TODO: Create and configure all DataReporters
	- line 117: # TODO: Create and configure all DataCollectors
	- line 118: # TODO: Assign each DataCollector to the correct DataReporter
	- line 126: #TODO: Create and configure all EventMonitors
	- line 127: #TODO: Create and configure all EventHandlers
	- line 128: #TODO: Assign each EventHandler to the correct EventMonitor
	- line 129: #TODO: Assign each EventMonitor to the correct DataCollector


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/public/js/datacat/GLmol.js (11 lines):
	- line 230: if (altLoc != ' ' && altLoc != 'A') continue; // FIXME: ad hoc
	- line 311: // TODO: Implement me!
	- line 525: // TODO: Find inner side of a ring
	- line 650: // FIXME: Winkled...
	- line 868: // FIXME: transition!
	- line 1089: if (atom.atom == 'O3\'') { // to connect 3' end. FIXME: better way to do?
	- line 1113: O.normalize().multiplyScalar(nucleicAcidWidth);  // TODO: refactor
	- line 1201: // TODO: Test
	- line 1398: // TODO: Add near(atomlist, neighbor, distanceCutoff)
	- line 1399: // TODO: Add expandToResidue(atomlist)
	- line 1605: // TODO: Better touch panel support.


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/controllers/GroupController.php (11 lines):
	- line 18: // TODO: Get the group name and description
	- line 19: // TODO: Create the new group
	- line 20: // TODO: Get users to add
	- line 21: // TODO: Update membership of users in list
	- line 33: // TODO: Get users to edit
	- line 34: // TODO: Update membership of users in list
	- line 39: // TODO: Determine if the user is a member of the group
	- line 40: // TODO: Determine if the user is owner of the group
	- line 41: // TODO: If not a member, load a page that says they cannot see the group
	- line 42: // TODO: If a standard member, display group name, description, members, projects(?) and experiments (?)
	- line 43: // TODO: If owner, display buttons to allow adding and removing members


airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java (10 lines):
	- line 897: // TODO: verify that gatewayId and project.gatewayId match authzToken
	- line 1329: // FIXME: re-enable experiment statistics for non-admin users
	- line 1479: // TODO: verify that gatewayId and experiment.gatewayId match authzToken
	- line 1778: // TODO: update the experiment via a DB event
	- line 1858: // TODO - call validation module and validate experiment
	- line 2158: // TODO: verify that gatewayId matches gatewayId in authzToken
	- line 2682: // TODO: verify that gatewayId matches authzToken gatewayId
	- line 2900: // TODO: restrict to only application deployments that are accessible to user
	- line 4683: // TODO: Move this Thrift conversion to utility class
	- line 5655: // TODO: verify that gatewayId in groupResourceProfile matches authzToken gatewayId


airavata-api/airavata-client-sdks/airavata-python-sdk/airavata_experiments/airavata.py (6 lines):
	- line 326: TODO add data_svc fallback
	- line 384: TODO add data_svc fallback
	- line 419: TODO add data_svc fallback
	- line 464: TODO add data_svc fallback
	- line 713: "pythonVersion": "3.10", # TODO verify
	- line 714: "keepAlive": False, # TODO verify


modules/orchestrator/orchestrator-service/src/main/java/org/apache/airavata/orchestrator/server/OrchestratorServerHandler.java (6 lines):
	- line 145: // TODO deprecate this approach as we are replacing gfac
	- line 189: //FIXME Resolving replica if available. This is a very crude way of resolving input replicas. A full featured
	- line 190: //FIXME replica resolving logic should come here
	- line 593: // TODO deprecate this approach as we are replacing gfac
	- line 768: // TODO if experiment have more than one process associated with it, then this should be changed.
	- line 965: // TODO deprecate this approach as we are replacing gfac


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/public/js/moment.js (5 lines):
	- line 538: // TODO: remove 'name' arg after deprecation is removed
	- line 1324: // TODO: We need to take the current isoWeekYear, but that depends on
	- line 2587: // TODO: Move this out of here!
	- line 2590: // TODO: Another silent failure?
	- line 2695: // TODO (iskren): Use anchor date (like 1st Jan) to compute this.


modules/sharing-registry/sharing-registry-server/src/main/java/org/apache/airavata/sharing/registry/server/SharingRegistryServerHandler.java (4 lines):
	- line 568: //TODO limit offset
	- line 580: //TODO limit offset
	- line 912: //TODO Check for permission changes
	- line 963: //TODO Check for permission changes


sandbox/simstream/simstream/eventmonitor.py (4 lines):
	- line 27: # TODO: Add method to add handlers
	- line 28: # TODO: Add method to create PikaProducer
	- line 29: # TODO: Add method to use PikaProducer to respond to events
	- line 30: # TODO: Add method to deactivate monitor


modules/file-server/src/main/java/org/apache/airavata/file/server/service/AirvataFileService.java (3 lines):
	- line 47: AiravataDirectory airavataDirectory = new AiravataDirectory("root", System.currentTimeMillis()); // TODO: set dir name
	- line 51: List<String> fileList = agentAdaptor.listDirectory(subPath); // TODO: Validate if this is a file or dir
	- line 56: fileMetadata.getSize(), System.currentTimeMillis(), System.currentTimeMillis())); // TODO: update created and updated time


modules/credential-store/credential-store-service/src/main/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAO.java (3 lines):
	- line 158: String email = resultSet.getString("COMMUNITY_USER_EMAIL"); // TODO fix typo
	- line 196: String email = resultSet.getString("COMMUNITY_USER_EMAIL"); // TODO fix typo
	- line 235: String email = resultSet.getString("COMMUNITY_USER_EMAIL"); // TODO fix typo


modules/airavata-helix/agent-impl/ssh-agent/src/main/java/org/apache/airavata/helix/agent/ssh/SshAgentAdaptor.java (3 lines):
	- line 37: * TODO: Class level comments please
	- line 292: // TODO file not found does not return exception
	- line 638: //FIXME: Redundant


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/libraries/Keycloak/Keycloak.php (3 lines):
	- line 113: // TODO: add state variable to request and put into session
	- line 409: // TODO: move this to IamAdminServices
	- line 449: // TODO: cache the result of the request


airavata-services/profile-service/profile-service-server/src/main/java/org/apache/airavata/service/profile/handlers/GroupManagerServiceHandler.java (3 lines):
	- line 50: //TODO Validations for authorization
	- line 332: // TODO: replace these methods with ThriftClientPool (see AIRAVATA-2607)
	- line 393: // FIXME: workaround for UserProfiles that failed to sync to the sharing


modules/registry/registry-server/registry-api-service/src/main/java/org/apache/airavata/registry/api/service/handler/RegistryServerHandler.java (3 lines):
	- line 410: // FIXME: for now allowing to pass null accessibleExpIds (only admin users should call this method)
	- line 5098: // TODO check the gateway
	- line 5112: // TODO check the gateway


modules/agent-framework/airavata-fuse/src/grpcfs_server/main.go (3 lines):
	- line 96: // TODO implement any locks here
	- line 107: // TODO implement any locks here
	- line 176: // TODO properly use offset


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/async/TEvhttpServer.cpp (3 lines):
	- line 138: // TODO: Log an error.
	- line 144: // TODO: Log an error.
	- line 152: // TODO: Log an error.


airavata-local-agent/renderer/pages/tabs-view.jsx (3 lines):
	- line 235: "wallTimeLimit": 60, // TODO: get this from the user
	- line 369: // TODO: remove this
	- line 376: //   // TODO: delete these


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/AbstractTask.java (2 lines):
	- line 45: * TODO: Class level comments please
	- line 147: // TODO Publish through kafka channel with task and workflow id


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/libraries/Wsis/Wsis.php (2 lines):
	- line 216: //FIXME hacky fix for the CILogon -> OpenID issue in WSO2 IS
	- line 499: //FIXME hacky fix for the CILogon -> OpenID issue in WSO2 IS


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/VirtualProfiling.cpp (2 lines):
	- line 25: // TODO: This code only works with g++ (since we rely on the fact
	- line 32: // TODO: We also require glibc for the backtrace() and backtrace_symbols()


modules/registry/registry-server/registry-api-service/src/main/java/org/apache/airavata/registry/api/service/messaging/RegistryServiceDBEventHandler.java (2 lines):
	- line 155: //TODO: find appropriate method
	- line 160: //TODO: find appropriate method


sandbox/simstream/simstream/datareporter.py (2 lines):
	- line 27: # TODO: Refactor to iterate over producers, not collectors. Collectors should
	- line 29: # TODO: Add method to deactivate reporter


modules/sharing-registry/sharing-registry-server/src/main/java/org/apache/airavata/sharing/registry/db/repositories/AbstractRepository.java (2 lines):
	- line 52: //FIXME do a bulk insert
	- line 64: //FIXME do a bulk update


airavata-services/profile-service/iam-admin-services-core/src/main/java/org/apache/airavata/service/profile/iam/admin/services/core/impl/TenantManagementKeycloakImpl.java (2 lines):
	- line 721: // TODO: this is needed for migrating from roles to group-based auth but after migration we can remove this
	- line 727: // FIXME: this only searches through the most recent 100 users for the given role (assuming there are no more than 10,000 users in the gateway)


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/submission/config/GroovyMapBuilder.java (2 lines):
	- line 119: // TODO fix this
	- line 159: // TODO fix this


airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/tools/RegisterSampleApplications.java (2 lines):
	- line 1393: // TODO - set job manage commands for UGE and LSF type compute resources.
	- line 1395: // TODO - set parallelism command


modules/credential-store/credential-store-service/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreCallbackServlet.java (2 lines):
	- line 125: // TODO remove hard coded values, once passing query parameters is
	- line 192: certificateCredential.setNotBefore(Utility.convertDateToString(certificates[0].getNotBefore())); //TODO check this is correct


modules/commons/src/main/java/org/apache/airavata/common/utils/DerbyTestUtil.java (2 lines):
	- line 219: * TODO: Handle dependencies by looping in some intelligent way until everything
	- line 341: * TODO: Handle errors to ensure all objects are dropped, probably requires


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/cancel/CancelCompletingTask.java (2 lines):
	- line 29: // TODO: Some schedulers do not send notifications once the job is cancelled. It will cause experiment to stay in
	- line 37: // TODO temporary stop cleaning up because this will cause later cancellation events to be gone un notified


airavata-local-agent/renderer/pages/login.jsx (2 lines):
	- line 58: // TODO: implement this section
	- line 143: // TODO: ask background process for what gateway we are currently configured on


modules/airavata-helix/workflow-impl/src/main/java/org/apache/airavata/helix/workflow/WorkflowOperator.java (2 lines):
	- line 38: * TODO: Class level comments please
	- line 127: //TODO : Do we need to monitor workflow status? If so how do we do it in a scalable manner? For example,


modules/credential-store/credential-store-service/src/main/java/org/apache/airavata/credential/store/server/CredentialStoreServerHandler.java (2 lines):
	- line 273: // FIXME: need to get gatewayId for CertificateCredentials
	- line 275: // FIXME: get the public key? Or what would be appropriate for a summary of a CertificateCredential?


thrift-interface-descriptions/airavata-apis/airavata_api.thrift (2 lines):
	- line 1499: // FIXME: Deprecated, use getApplicationDeploymentsForAppModuleAndGroupResourceProfile instead
	- line 1712: // FIXME: Deprecated, use getApplicationDeploymentsForAppModuleAndGroupResourceProfile instead


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/libraries/ExperimentUtilities.php (2 lines):
	- line 264: // TODO: sort taskStatuses by time and output them
	- line 1164: //TODO - implement following logic with new data model.


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/workflow/ParserWorkflowManager.java (2 lines):
	- line 105: // FIXME is it ApplicationInterfaceId or ApplicationName
	- line 175: // TODO: figure out processId and register


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/controllers/FilemanagerController.php (1 line):
	- line 13: //FIXME check for no ../ parts in the path


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/server/TNonblockingServer.cpp (1 line):
	- line 1458: // TODO: figure out something better to do here, but for now kill the


modules/orchestrator/orchestrator-core/src/main/java/org/apache/airavata/orchestrator/cpi/impl/SimpleOrchestratorImpl.java (1 line):
	- line 320: // TODO - breakdown unicore all in one task to multiple tasks, then we don't need to handle UNICORE here.


modules/registry/registry-server/registry-api-service/src/main/java/org/apache/airavata/registry/api/service/RegistryAPIServer.java (1 line):
	- line 171: // TODO Auto-generated method stub


modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/api/AgentAdaptor.java (1 line):
	- line 30: * TODO: Class level comments please


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/submission/LocalJobSubmissionTask.java (1 line):
	- line 57: // TODO fix this


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/libraries/Airavata/Model/Data/Movement/Types.php (1 line):
	- line 40: * FIXME: Change GSI to a more precise generic security protocol - X509


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/AiravataTask.java (1 line):
	- line 617: // TODO this is inefficient. Try to use a connection pool


modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/api/CommandOutput.java (1 line):
	- line 25: * TODO: Class level comments please


modules/messaging/core/src/main/java/org/apache/airavata/messaging/core/MessagingFactory.java (1 line):
	- line 74: //FIXME: Set autoAck to false and handle possible situations


modules/airavata-helix/agent-impl/ssh-agent/src/main/java/org/apache/airavata/helix/agent/ssh/StandardOutReader.java (1 line):
	- line 29: * TODO: Class level comments please


modules/commons/src/main/java/org/apache/airavata/common/utils/ServiceUtils.java (1 line):
	- line 105: //            //FIXME: the context root will be correct after updating the web.xml


thrift-interface-descriptions/data-models/resource-catalog-models/data_movement_models.thrift (1 line):
	- line 44: * FIXME: Change GSI to a more precise generic security protocol - X509


modules/airavata-helix/task-api/src/main/java/org/apache/airavata/helix/task/api/TaskHelper.java (1 line):
	- line 25: * TODO: Class level comments please


modules/credential-store/credential-store-service/src/main/java/org/apache/airavata/credential/store/store/impl/CertificateCredentialWriter.java (1 line):
	- line 110: * TODO Remove later - If we dont need to expose this in the interface public void writeCommunityUser(CommunityUser


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/controllers/GatewayprofileController.php (1 line):
	- line 19: //TODO:: Maybe this is a better way. Things to ponder upon.


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/support/adaptor/AdaptorSupportImpl.java (1 line):
	- line 34: * TODO: Class level comments please


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/libraries/URPUtilities.php (1 line):
	- line 98: // FIXME: for now assume that if a user is adding or updating a UserComputeResourcePreference then they have also validated that it works. It would be better to confirm that in Airavata.


modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/entities/appcatalog/GroupResourceProfileEntity.java (1 line):
	- line 51: // TODO: change these timestamp to actual Timestamp


airavata-services/services-security/src/main/java/org/apache/airavata/service/security/KeyCloakSecurityManager.java (1 line):
	- line 260: //TODO get the actual token expiration time


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/transport/TSocketPool.cpp (1 line):
	- line 176: /* TODO: without apc we ignore a lot of functionality from the php version */


modules/airavata-helix/task-api/src/main/java/org/apache/airavata/helix/task/api/annotation/TaskParam.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/transport/TFileTransport.h (1 line):
	- line 183: // TODO: what is the correct behaviour for this?


airavata-services/profile-service/profile-service-commons/src/main/java/org/apache/airavata/service/profile/commons/utils/JPAConstants.java (1 line):
	- line 28: // TODO: is this needed?


modules/commons/src/main/java/org/apache/airavata/common/utils/JSONUtil.java (1 line):
	- line 71: // TODO - Implement this method


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/public/js/sharing/share.js (1 line):
	- line 245: // TODO: is this used any longer?  I don't see where resource_id gets


airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/secure/client/SecureClient.java (1 line):
	- line 32: // TODO Implement in keycloak


modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/entities/appcatalog/ComputeResourcePolicyEntity.java (1 line):
	- line 57: // TODO: Store COMPUTE_RESOURCE_ID and QUEUE_NAME in table so it can FK to BATCH_QUEUE


modules/registry/registry-cpi/src/main/java/org/apache/airavata/registry/cpi/ReplicaCatalog.java (1 line):
	- line 25: TODO: Remove interface once registry refactoring is complete


sandbox/simstream/simstream/datacollector.py (1 line):
	- line 33: # TODO: Refactor into subclass of Thread


modules/airavata-helix/task-api/src/main/java/org/apache/airavata/helix/task/api/support/AdaptorSupport.java (1 line):
	- line 29: * TODO: Class level comments please


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/views/admin/manage-experiments.blade.php (1 line):
	- line 673: // TODO: update message to include username, appname and hostname?


modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/utils/ObjectMapperSingleton.java (1 line):
	- line 72: // FIXME: Dozer can handle case insensitive field matching, for example, "gatewayID" maps to


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/protocol/TDebugProtocol.h (1 line):
	- line 207: // TODO: Fix this with a trait.


modules/sharing-registry/sharing-registry-server/src/main/java/org/apache/airavata/sharing/registry/db/repositories/EntityRepository.java (1 line):
	- line 43: //TODO Replace with prepared statements


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/transport/TServerSocket.cpp (1 line):
	- line 387: TODO: if THRIFT_EINTR is received, we'll restart the timeout.


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/support/TaskHelperImpl.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/SecurityProtocol.java (1 line):
	- line 38: * FIXME: Change GSI to a more precise generic security protocol - X509


modules/agent-framework/agent-service/src/main/java/org/apache/airavata/agent/connection/service/handlers/AgentManagementHandler.java (1 line):
	- line 123: String projectId = airavataService.extractDefaultProjectId(airavataClient); // TODO should be configurable


modules/commons/src/main/java/org/apache/airavata/common/utils/ThriftUtils.java (1 line):
	- line 54: // TODO return Environment Clean up task  model


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/libraries/SharingUtilities.php (1 line):
	- line 87: // FIXME: instead of loading all user profiles it would be better to


modules/airavata-metascheduler/process-scheduler/src/main/java/org/apache/airavata/metascheduler/process/scheduling/engine/cr/selection/MultipleComputeResourcePolicy.java (1 line):
	- line 24: * //TODO: implemented for load testing, for proper usecases airavata should enable multiple compute resources in Experiment creation


modules/job-monitor/email-monitor/src/main/java/org/apache/airavata/monitor/email/parser/UGEEmailParser.java (1 line):
	- line 59: //FIXME - HACK to handle Little Dog email issue from SIU


modules/airavata-helix/agent-impl/ssh-agent/src/main/java/org/apache/airavata/helix/agent/ssh/SshAdaptorParams.java (1 line):
	- line 27: * TODO: Class level comments please


modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/api/Agent.java (1 line):
	- line 23: * TODO: Class level comments please


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/support/adaptor/AgentStore.java (1 line):
	- line 33: * TODO: Class level comments please


airavata-local-agent/renderer/components/ExperimentModal.jsx (1 line):
	- line 407: {/* TODO: experiment status does not update bc its passed as a prop */}


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/workflow/PostWorkflowManager.java (1 line):
	- line 150: // TODO get cluster lock before that


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/cancel/RemoteJobCancellationTask.java (1 line):
	- line 139: // TODO this is temporary fix. Remove this line when the schedulers are configured to notify when an job is externally cancelled


modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/repositories/appcatalog/ComputeResourceRepository.java (1 line):
	- line 91: //TODO remove existing one


modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/controller/HelixController.java (1 line):
	- line 37: * TODO: Class level comments please


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/OutPort.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-local-agent/renderer/pages/create-namd-experiment.jsx (1 line):
	- line 89: const [linkedCoreAndNode, setLinkedCoreAndNode] = useState(true); // TODO: fix this


modules/db-event-manager/src/main/java/org/apache/airavata/db/event/manager/DBEventManagerRunner.java (1 line):
	- line 118: // TODO: implement stopping the DBEventManager


modules/airavata-metascheduler/metadata-analyzer/src/main/java/org/apache/airavata/metascheduler/metadata/analyzer/impl/DataAnalyzerImpl.java (1 line):
	- line 33: //TODO: handle multiple gateways


modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/api/AgentException.java (1 line):
	- line 23: * TODO: Class level comments please


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/util/PropertyResolver.java (1 line):
	- line 30: * TODO: Class level comments please


modules/agent-framework/deployments/jupyterhub/jupyterhub_config.py (1 line):
	- line 19: # c.Authenticator.admin_users = {'user@airavata'} TODO Add admin users


modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/entities/appcatalog/ComputeResourceReservationEntity.java (1 line):
	- line 68: // TODO: FK queue table to BatchQueueEntity?


modules/job-monitor/email-monitor/src/main/java/org/apache/airavata/monitor/email/parser/PBSEmailParser.java (1 line):
	- line 81: // TODO - Remove rabbitmq client script line from the script.


airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/Model/Data/Movement/Types.php (1 line):
	- line 40: * FIXME: Change GSI to a more precise generic security protocol - X509


modules/sharing-registry/sharing-registry-server/src/main/java/org/apache/airavata/sharing/registry/messaging/SharingServiceDBEventHandler.java (1 line):
	- line 106: //FIXME: Remove if not required


modules/airavata-helix/task-api/src/main/java/org/apache/airavata/helix/task/api/annotation/TaskOutPort.java (1 line):
	- line 28: * TODO: Class level comments please


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/participant/HelixParticipant.java (1 line):
	- line 45: * TODO: Class level comments please


modules/airavata-helix/agent-api/src/main/java/org/apache/airavata/agents/api/AgentUtils.java (1 line):
	- line 14: // TODO this is inefficient. Try to use a connection pool


airavata-api/airavata-client-sdks/airavata-python-sdk/airavata/model/data/movement/ttypes.py (1 line):
	- line 42: FIXME: Change GSI to a more precise generic security protocol - X509


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/libraries/Keycloak/KeycloakServiceProvider.php (1 line):
	- line 39: // TODO: we can derive this from tenant-domain and service-url


airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/thrift/protocol/TProtocol.h (1 line):
	- line 654: // TODO: remove these two calls, they are for backwards


modules/cluster-monitoring/src/main/java/org/apache/airavata/cluster/monitoring/ClusterStatusMonitorJob.java (1 line):
	- line 83: //FIXME This should come from compute resource description


modules/airavata-helix/task-core/src/main/java/org/apache/airavata/helix/core/util/TaskUtil.java (1 line):
	- line 36: * TODO: Class level comments please


airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/AiravataAPIServer.java (1 line):
	- line 214: // TODO Auto-generated method stub


modules/airavata-helix/task-api/src/main/java/org/apache/airavata/helix/task/api/annotation/TaskDef.java (1 line):
	- line 28: * TODO: Class level comments please


modules/orchestrator/orchestrator-service/src/main/java/org/apache/airavata/orchestrator/server/OrchestratorServer.java (1 line):
	- line 214: // TODO Auto-generated method stub


modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/utils/JPAUtil/RepCatalogJPAUtils.java (1 line):
	- line 31: // TODO: we can rename this back to replicacatalog_data once we completely replace the other replicacatalog_data persistence context in airavata-registry-core


modules/compute-account-provisioning/src/main/java/org/apache/airavata/accountprovisioning/SSHAccountManager.java (1 line):
	- line 171: // TODO: create account for user if user doesn't have account


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/controllers/HomeController.php (1 line):
	- line 25: // FIXME: can't figure out how to pass variables to the landingpage template


thrift-interface-descriptions/airavata-apis/messaging_events.thrift (1 line):
	- line 110: //    // FIXME - Job execution context


modules/ide-integration/src/main/containers/pga/airavata-php-gateway/app/routes.php (1 line):
	- line 168: //TODO check permission


modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/utils/JPAUtil/AppCatalogJPAUtils.java (1 line):
	- line 31: // TODO: we can rename this back to appcatalog_data once we completely replace


modules/computer-resource-monitoring-service/src/main/java/org/apache/airavata/compute/resource/monitoring/job/MonitoringJob.java (1 line):
	- line 115: //TODO: intial phase we are only supporting SLURM