Path	Lines of Code
ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml	93
ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsOverlapLookupAnnotator.xml	119
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/ae/CasedAnnotationFinder.java	334
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/annotation/AlikeSubsumingAnnotationCreator.java	66
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/annotation/AnnotationCreator.java	15
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/annotation/AnnotationCreatorUtil.java	187
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/annotation/NonSubsumingAnnotationCreator.java	25
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/annotation/SemanticSubsumingAnnotationCreator.java	106
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/annotation/SubsumptionUtil.java	82
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/dictionary/BsvDictionary.java	56
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/dictionary/BsvListDictionary.java	52
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/dictionary/CasedDictionary.java	8
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/dictionary/DictionaryStore.java	26
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/dictionary/InMemoryDictionary.java	39
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/dictionary/JdbcDictionary.java	143
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/BsvEncoder.java	48
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/BsvListEncoder.java	47
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/CodeSchema.java	38
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/EncoderStore.java	26
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/InMemoryEncoder.java	20
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/JdbcEncoder.java	132
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/TermEncoder.java	10
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/encoder/TermEncoding.java	26
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/lookup/CandidateTerm.java	165
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/lookup/ContiguousLookupEngine.java	158
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/lookup/DiscoveredTerm.java	42
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/lookup/LookupEngine.java	129
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/lookup/LookupToken.java	68
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/table/column/CodeType.java	17
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/table/column/SchemaCode.java	12
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/table/column/Synonym.java	21
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/bsv/BsvFileParser.java	33
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/bsv/BsvObjectCreator.java	22
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/bsv/StringArrayCreator.java	16
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/jdbc/JdbcUtil.java	64
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/textspan/ContiguousTextSpan.java	30
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/textspan/DiscontiguousTextSpan.java	87
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/textspan/MagicTextSpan.java	28
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/tokenize/TokenizedTerm.java	199
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/util/tokenize/TokenizedTermMapper.java	104
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/cased/wsd/WsdUtil.java	43
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/AbstractJCasTermAnnotator.java	186
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/DefaultJCasTermAnnotator.java	77
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/DictionaryLookupFactory.java	45
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/JCasTermAnnotator.java	26
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java	169
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/WindowProcessor.java	12
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/AbstractConceptFactory.java	25
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/BsvConceptFactory.java	119
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/Concept.java	13
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/ConceptFactory.java	8
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/DefaultConcept.java	75
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/JdbcConceptFactory.java	250
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/MemConceptFactory.java	20
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concept/UmlsJdbcConceptFactory.java	33
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/concurrent/ThreadSafeFastLookup.java	66
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/AbstractTermConsumer.java	63
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/DefaultTermConsumer.java	180
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/DefaultUmlsConceptCreator.java	51
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/PrecisionTermConsumer.java	93
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/SemanticCleanupTermConsumer.java	99
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/TermConsumer.java	19
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/UmlsConceptCreator.java	9
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/consumer/WsdTermConsumer.java	1
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/AbstractRareWordDictionary.java	25
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/BsvRareWordDictionary.java	82
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/DictionaryDescriptorParser.java	212
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/JdbcRareWordDictionary.java	88
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/MemRareWordDictionary.java	16
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/RareWordDictionary.java	9
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/RareWordDictionaryWrapper.java	1
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/RareWordTermMapCreator.java	286
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/dictionary/UmlsJdbcRareWordDictionary.java	34
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/relation/CuiRelationsJdbc.java	1
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/term/RareWordTerm.java	64
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/term/SpannedRareWordTerm.java	36
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/textspan/DefaultTextSpan.java	39
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/textspan/MultiTextSpan.java	56
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/textspan/TextSpan.java	6
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/CuiCodeUtil.java	86
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/DefaultDictionarySpec.java	114
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/DictionarySpec.java	15
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/FastLookupToken.java	47
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/JdbcConnectionFactory.java	103
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/LookupUtil.java	25
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/SemanticUtil.java	10
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/TuiCodeUtil.java	43
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java	206
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/tool/DictionaryComparator.java	69
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/tool/DictionaryCuiCounter.java	60
ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/tool/SemanticTableComparator.java	226
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/CustomCuiBsv.xml	25
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/CustomCuiTui2Bsv.xml	35
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/CustomCuiTuiBsv.xml	35
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/custom_cui_bsv.bsv	20
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/custom_cui_tui_bsv.bsv	22
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/custom_mixed_bsv.bsv	23
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/custom_tui_bsv.bsv	10
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/tinyDict.bsv	42
ctakes-dictionary-lookup-fast/src/user/resources/org/apache/ctakes/dictionary/lookup/fast/bsv/tinyDictSpec.xml	36