Path	Lines of Code
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/BackwardsTimeAnnotator.java	204
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/CRFTimeAnnotator.java	148
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ClearTKDocTimeRelAnnotator.java	51
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ClearTKDocumentCreationTimeAnnotator.java	26
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ClearTKLinkToTHYMELinkAnnotator.java	66
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ConsecutiveSentencesEventEventRelationAnnotator.java	204
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ConsecutiveSentencesEventTimeRelationAnnotator.java	177
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ConstituencyBasedTimeAnnotator.java	233
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ContextualModalityAnnotator.java	103
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/CrossSentenceTemporalRelationAnnotator.java	95
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/DeepPheAnaforaXMLReader.java	207
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/DocTimeApproximator.java	77
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/DocTimeRelAnnotator.java	343
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/DocTimeRelWithTreeAnnotator.java	1
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventAdmissionTimeAnnotator.java	227
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventAnnotator.java	329
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventDischargeTimeAnnotator.java	209
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventEventCNNAnnotator.java	265
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventEventCRFRelationAnnotator.java	226
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventEventI2B2RelationAnnotator.java	181
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventEventRelationAnnotator.java	222
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventEventRelationGoldContainerAnnotator.java	211
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventEventRelationSeedBasedAnnotator.java	206
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeCNNAnnotator.java	267
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeI2B2RelationAnnotator.java	173
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java	174
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventTimeSelfRelationAnnotator.java	172
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/EventToClearTKEventAnnotator.java	35
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/I2B2TemporalXMLReader.java	141
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java	186
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/NEPredicateEventAnnotator.java	67
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/NeuralEventTimeSelfRelationAnnotator.java	173
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/SimpleMedDatesFinder.java	323
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/THYMEAnaforaXMLReader.java	386
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/THYMEKnowtatorXMLReader.java	93
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/THYMEQAAnaforaXMLReader.java	300
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/THYMETreebankReader.java	250
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TemporalEntityAnnotator_ImplBase.java	28
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TemporalRelationExtractorAnnotator.java	211
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TemporalRelationRuleAnnotator.java	156
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TemporalSequenceAnnotator_ImplBase.java	19
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/ThymePatientViewAnnotator.java	63
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TimeAnnotator.java	239
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java	193
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TimexDischargeTimeAnnotator.java	192
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TimexToClearTKTimexAnnotator.java	25
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/WithinSentenceBeforeRelationAnnotator.java	131
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/baselines/F1BaselineEventTimeRelationAnnotator.java	84
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/baselines/PrecisionBaselineEventTimeRelationAnnotator.java	82
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/baselines/RecallBaselineEventEventRelationAnnotator.java	58
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/baselines/RecallBaselineEventTimeRelationAnnotator.java	73
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/baselines/TimidBaselineEventTimeRelationAnnotator.java	70
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/baselines/TreeHeightBaseline.java	80
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/CheckSpecialWordRelationExtractor.java	91
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/ChunkingExtractor.java	31
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/ClosestVerbExtractor.java	73
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/ConjunctionRelationFeaturesExtractor.java	49
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/ContinuousTextExtractor.java	51
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/CoordinateFeaturesExtractor.java	53
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/CoveredTextToValuesExtractor.java	88
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/DateAndMeasurementExtractor.java	81
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/DependencyFeatureExtractor.java	55
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/DependencyParseUtils.java	103
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/DependencyPathFeaturesExtractor.java	27
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/DependingVerbsFeatureExtractor.java	83
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/DeterminerRelationFeaturesExtractor.java	31
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/DocTimeRelFeatureExtractor.java	27
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/EmptyFeaturesExtractor.java	13
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/EventArgumentPropertyExtractor.java	70
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/EventPositionFeatureExtractor.java	93
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/EventPositionRelationFeaturesExtractor.java	94
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/EventPropertyExtractor.java	221
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/EventTimeRelationFeatureExtractor.java	87
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/EventTimeRelationsFeaturesExtractor.java	37
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/FramesetCategoryExtractor.java	45
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/IdentifiedAnnotationFeatureExtractor.java	92
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/ListFeaturesExtractor.java	90
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java	119
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/NearbyVerbTenseRelationExtractor.java	59
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/NearbyVerbTenseXExtractor.java	62
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/NearestFlagFeatureExtractor.java	73
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/NoOtherETPuntInBetweenFeaturesExtractor.java	36
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/NumberOfEventTimeBetweenCandidatesExtractor.java	51
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/NumberOfEventsInTheSameSentenceExtractor.java	76
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/OverlappedHeadFeaturesExtractor.java	67
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/ParseFeatureExtractor.java	35
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/ParseSpanFeatureExtractor.java	53
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/PredicateArgumentExtractor.java	47
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/RelationEmbeddingFeatureExtractor.java	119
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/RelationSyntacticETEmbeddingFeatureExtractor.java	135
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/RelationSyntacticEmbeddingFeatureExtractor.java	179
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/SRLRelationFeaturesExtractor.java	62
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/SectionHeaderExtractor.java	55
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/SectionHeaderRelationExtractor.java	73
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/SpecialAnnotationRelationExtractor.java	110
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/SyntacticParentFeatureExtractor.java	21
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TemporalAttributeFeatureExtractor.java	35
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TemporalAttributeForMixEventTimeExtractor.java	45
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TemporalPETFlatExtractor.java	141
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TimeWordTypeExtractor.java	50
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TimeXExtractor.java	134
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TimeXPropertyRelationFeaturesExtractor.java	46
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TimeXRelationFeaturesExtractor.java	66
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/TokenPropertyFeaturesExtractor.java	97
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java	76
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UmlsFeatureExtractor.java	57
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UmlsSingleFeatureExtractor.java	40
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java	49
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/duration/DurationDistributionFeatureExtractor.java	38
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/duration/DurationEventEventFeatureExtractor.java	46
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/duration/DurationEventTimeFeatureExtractor.java	45
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/duration/DurationExpectationFeatureExtractor.java	56
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/duration/DurationTimeUnitFeatureExtractor.java	38
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/BinaryAlphaFeatureSelection.java	150
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/Chi2FeatureSelection.java	160
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/FeatureSelection.java	50
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/MutualInformationFeatureSelection.java	192
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/OddsRatioFeatureSelection.java	121
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/ZscoreNormalizationExtractor.java	141
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/treekernel/DependencySingleTreeExtractor.java	46
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/treekernel/EventTimeFlatTreeFeatureExtractor.java	78
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/treekernel/SyntaticSingleTreeExtractor.java	40
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/treekernel/TemporalFTExtractor.java	65
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/treekernel/TemporalPETExtractor.java	111
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/treekernel/TemporalPathExtractor.java	64
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/cc/EventTimeAnaforaWriter.java	256
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/cc/SimpleMedDatesPrinter.java	63
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/concurrent/ThreadSafeBackTimeAnnotator.java	93
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/concurrent/ThreadSafeDocTimeRelAnnotator.java	82
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/concurrent/ThreadSafeEventAnnotator.java	90
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/concurrent/ThreadSafeEventEventRelAnnotator.java	87
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/concurrent/ThreadSafeEventTimeRelAnnotator.java	87
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CompareFeatureStructures.java	269
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/EventContextAnalysisPipeline.java	147
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/EventPrinterPipeline.java	156
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/ExtractDoctimerelPairProbabilities.java	72
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/GoldRelationViewer.java	104
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/PrintFailedTimeNormalizations.java	80
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/PrintInconsistentAnnotations.java	145
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/PrintNonrelatedEvents.java	78
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/PrintNormalizedTemporalExpressions.java	36
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/RelationContextViewerPipeline.java	147
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/TimexTreeAlignmentStatistics.java	85
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/EventDurationDistribution.java	204
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/EventEventDurationStatistics.java	108
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/EventTimeDurationStatistics.java	117
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/ExtractDurationsUsingContainsRelation.java	137
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/PreserveCertainEventEventRelationsInGold.java	59
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/PreserveCertainEventTimeRelationsInGold.java	73
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/PreserveCertainEventsInGold.java	39
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/PreserveUMLSEventEventRelationsInGold.java	70
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/PreserveUMLSEventTimeRelationsInGold.java	76
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/duration/Utils.java	319
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/CommandLine.java	27
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfAnnotationSpans_ImplBase.java	198
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfBothEEAndETRelations.java	700
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfClearTKEventProperties.java	203
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfClearTKEventSpans.java	80
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfClearTKRelations.java	146
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfClearTKTimeSpans.java	79
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventDocTimeRelDeepPhe.java	411
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventCRFRelations.java	659
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventDeepPheRelations.java	726
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventHybridModelsRelations.java	629
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventRelations.java	166
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventEventThymeRelations.java	792
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java	300
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventPropertiesTk.java	1
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventSpans.java	130
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeDeepPheRelations.java	730
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventTimeRelations.java	929
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfI2B2TemporalRelations.java	566
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfMetaTimeExpressionExtractor.java	187
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfNEPredicateEventSpans.java	70
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfSelfEventTimeRelations.java	652
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTemporalRelations_ImplBase.java	222
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java	239
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/Evaluation_ImplBase.java	1083
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/I2B2Data.java	61
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/NeuralEventEventRelationsCNNEvaluation.java	621
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/NeuralEventTimeRelationsCNNEvaluation.java	842
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/NeuralEventTimeRelationsEvaluation.java	871
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/PrintRelations.java	68
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/RemoveTreeAlignedMentions.java	48
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/THYMEData.java	53
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/KerasStringFeatureDataWriter.java	15
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/KerasStringOutcomeClassifier.java	15
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/KerasStringOutcomeClassifierBuilder.java	57
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/KerasStringOutcomeDataWriter.java	20
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/ScriptStringFeatureDataWriter.java	54
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/ScriptStringOutcomeClassifier.java	86
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/ScriptStringOutcomeClassifierBuilder.java	80
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/keras/ScriptStringOutcomeDataWriter.java	47
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventEventPosBasedAnnotator.java	183
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventEventPositionBasedAnnotator.java	183
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventEventTokenAndBIOBasedAnnotator.java	186
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventEventTokenAndPosBasedAnnotator.java	186
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventEventTokenBasedAnnotator.java	346
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventTimePosBasedAnnotator.java	160
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventTimePositionBasedAnnotator.java	160
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventTimeTokenAndBIOBasedAnnotator.java	254
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventTimeTokenAndPosBasedAnnotator.java	254
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/EventTimeTokenBasedAnnotator.java	330
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/JointRelationTokenBasedAnnotator.java	388
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/ae/WindowBasedAnnotator.java	250
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/ArgContextProvider.java	352
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/DtrRelPrinter.java	146
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/EventEventAllPairRelPrinter.java	190
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/EventEventRelPositionPrinter.java	142
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/EventEventRelPrinter.java	143
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/EventTimeRelPositionPrinter.java	152
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/EventTimeRelPrinter.java	157
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/GoldEventPrinter.java	140
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/data/GoldEventPrinterWithLabels.java	142
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/eval/EvaluationOfNeuralEEAndETRelations.java	678
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/eval/EvaluationOfNeuralJointRelations.java	679
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/eval/EventEventNeuralEvaluation.java	625
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/nn/eval/EventTimeNeuralEvaluation.java	845
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/EventAndTimeExtractionPipeline.java	46
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/EventExtractionPipeline.java	39
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/EventPrintingPipeline.java	57
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/FullTemporalExtractionPipeline.java	101
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/TemporalExtractionPipeline_ImplBase.java	41
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/pipelines/TimeExtractionPipeline.java	33
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/AnnotationIdCollection.java	76
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/CalendarUtil.java	187
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/CheckKnowtatorAnnotations.java	74
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/PatientViewsUtil.java	53
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/RunCorpusDiagnostics.java	86
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/SMOTEplus.java	94
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/SoftMaxUtil.java	35
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/TLinkTypeArray2.java	275
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/TimeRelationConstants.java	11
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/TlinkType.java	170
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/TlinkTypeSet.java	62
ctakes-temporal/src/main/java/org/apache/ctakes/temporal/utils/TokenPreprocForWord2Vec.java	32
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/cleartk_io.py	109
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/dataset.py	105
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/dima-predict.py	51
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/et_RCNN_train-and-package.py	112
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/et_cleartk_io.py	117
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/et_dimaCNN_train-and-package.py	77
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/et_neural_testCNN.py	59
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/et_neural_train-and-package.py	63
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/et_resnet_func2_train-and-package.py	97
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/keras-predict.py	42
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/nn_models.py	83
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/rCNN-predict.py	84
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/resnet-predict.py	49
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/cleartk_io.py	109
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/cnn_classify.py	52
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/cnn_classify_hybrid.py	67
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/cnn_classify_position.py	81
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/cnn_train.py	72
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/cnn_train_hybrid.py	90
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/cnn_train_position.py	88
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/dataset.py	53
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/dataset_hybrid.py	71
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/dataset_position.py	87
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/et_cleartk_io.py	117
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/lstm_classify.py	47
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/lstm_classify_hybrid.py	61
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/lstm_train.py	56
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/lstm_train_hybrid.py	76
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/nn_models.py	83