Path	Lines of Code
README.md	63
ctakes-assertion-zoner/SectionAnnotatorV5.md	79
ctakes-assertion-zoner/src/main/resources/META-INF/org.apache.uima.fit/types.txt	1
ctakes-assertion/README.md	9
ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/TrainAllAssertionModels.txt	284
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/cue_words/all_cues.txt	454
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/cue_words/cue_words.txt	454
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt	6
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt	14
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt	7
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt	39
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt	12
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt	33
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt	14
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt	16
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt	13
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt	5
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt	5
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt	18
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt	42
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt	8
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt	17
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/fail.txt	13
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/history.txt	3
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/hypothetical_cue_list.txt	51
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/instance.txt	6
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/stop.txt	63
ctakes-assertion/src/main/resources/org/apache/ctakes/assertion/semantic_classes/uncertainty.txt	167
ctakes-chunker/README.md	2
ctakes-chunker/src/main/resources/org/apache/ctakes/chunker/data/treebank/genia/names-00.txt	200
ctakes-chunker/src/main/resources/org/apache/ctakes/chunker/data/treebank/genia/names-01.txt	300
ctakes-chunker/src/test/resources/data/text-files/text1.txt	3
ctakes-clinical-pipeline/README.md	6
ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/data/test/testfakenote.txt	3
ctakes-context-tokenizer/README.md	9
ctakes-core/README.md	1
ctakes-core/src/main/resources/org/apache/ctakes/core/data/test/sample_sd_training_sentences.txt	31
ctakes-core/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt	26
ctakes-core/src/main/resources/org/apache/ctakes/core/train/tokenizer/hyphenated.txt	3922
ctakes-core/src/main/resources/org/apache/ctakes/core/train/tokenizer/hyphenated_sample.txt	11
ctakes-core/src/user/resources/org/apache/ctakes/core/sections/ccda_sections.txt	44
ctakes-coreference/README.md	20
ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/data/test/testfakenote.txt	3
ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/train/stop.txt	270
ctakes-dependency-parser/README.md	15
ctakes-dependency-parser/desc/analysis_engine/README.txt	2
ctakes-dependency-parser/src/main/java/META-INF/org.apache.uima.fit/types.txt	1
ctakes-dependency-parser/src/main/readme.txt	1
ctakes-dictionary-lookup-fast/README.md	81
ctakes-dictionary-lookup-fast/doc/DictionaryLookupHelp.txt	308
ctakes-dictionary-lookup-fast/doc/dantesgate.txt	3
ctakes-dictionary-lookup/README.md	115
ctakes-dictionary-lookup/src/main/resources/org/apache/ctakes/dictionary/lookup/data/text-files/text1.txt	3
ctakes-distribution/README.md	8
ctakes-distribution/src/main/config/license_header.txt	14
ctakes-drug-ner/README.md	5
ctakes-drug-ner/src/main/resources/org/apache/ctakes/drug/ner/tokenizer/hyphen_freq.txt	4350
ctakes-examples/src/main/java/org/apache/ctakes/examples/ae/ApacheConDemoEngine.java	36
ctakes-examples/src/main/java/org/apache/ctakes/examples/ae/BodySideFinder.java	110
ctakes-examples/src/main/java/org/apache/ctakes/examples/ae/ConfigParameterExample.java	57
ctakes-examples/src/main/java/org/apache/ctakes/examples/ae/RegexBpFinder.java	75
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConAnnotationWriter.java	34
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConCorefWriter.java	44
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConDemoWriter.java	32
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConLocationWriter.java	27
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConParagraphWriter.java	23
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConSectionWriter.java	23
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConSentenceWriter.java	23
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/ApacheConTlinkWriter.java	41
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/FileTreeViewXmiWriter.java	54
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/TokenPrinter.java	20
ctakes-examples/src/main/java/org/apache/ctakes/examples/cc/TokenSpanWriter.java	37
ctakes-examples/src/main/java/org/apache/ctakes/examples/cr/ApacheConDemoReader.java	23
ctakes-examples/src/main/java/org/apache/ctakes/examples/cr/LetterColumnReader.java	208
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/HelloWorldBuilderRunner.java	36
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/HelloWorldCuiPiperRunner.java	28
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/HelloWorldPropsPiperRunner.java	30
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/MultiThreadedPipeline.java	118
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/PiperCreatorGui.java	9
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/ProcessDirBuilderRunner.java	47
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/ProcessDirPiperRunner.java	27
ctakes-examples/src/main/java/org/apache/ctakes/examples/pipeline/ProcessLinesClinicalRunner.java	33
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/GenSurg_UmbilicalHernia_1/GenSurg_UmbilicalHernia_1.ctakes_4.dave.completed.xml	1755
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/OBGYN_Gen_Abscess_1/OBGYN_Gen_Abscess_1.ctakes_4.dave.completed.xml	1925
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/OBGYN_HysterectomyAndBSO_1/OBGYN_HysterectomyAndBSO_1.ctakes_4.dave.completed.xml	844
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/OBGYN_IUD_1/OBGYN_IUD_1.ctakes_4.dave.completed.xml	997
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/OBGYN_LaborProgressNote_1/OBGYN_LaborProgressNote_1.ctakes_4.dave.completed.xml	83
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/OBGYN_MVAPrego_1/OBGYN_MVAPrego_1.ctakes_4.dave.completed.xml	988
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/OBGYN_PROMCheck_1/OBGYN_PROMCheck_1.ctakes_4.dave.completed.xml	1118
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/Peds_Dysphagia_1/Peds_Dysphagia_1.ctakes_4.dave.completed.xml	2498
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/Peds_FebrileSez_1/Peds_FebrileSez_1.ctakes_4.dave.completed.xml	3454
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/Peds_RoutBirthNote_1/Peds_RoutBirthNote_1.ctakes_4.dave.completed.xml	779
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_AAA_Leak_1/VascSurg_AAA_Leak_1.ctakes_4.dave.completed.xml	879
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_FollowUp_1/VascSurg_FollowUp_1.ctakes_4.dave.completed.xml	1006
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_PVD_1/VascSurg_PVD_1.ctakes_4.dave.completed.xml	2735
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_AAA_1/VascSurg_RO_AAA_1.ctakes_4.dave.completed.xml	722
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_DVT_1/VascSurg_RO_DVT_1.ctakes_4.dave.completed.xml	722
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/anafora_annotated/ctakes_4-schema.xml	318
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/ctakes_4-schema.xml	260
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/knowtator_annotated/ID000_clinic_demo/ID000_clinic_demo.Coreference.gold.completed.xml	1648
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/knowtator_annotated/ID000_clinic_demo/ID000_clinic_demo.Temporal-Entity.gold.completed.xml	2364
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/knowtator_annotated/ID000_clinic_demo/ID000_clinic_demo.Temporal-Relation.gold.completed.xml	4374
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/knowtator_annotated/ID000_clinic_demo/ID000_clinic_demo.UMLS-Entity.gold.completed.xml	3413
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/knowtator_annotated/ID000_clinic_demo/ID000_clinic_demo.timeline.txt	58
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/knowtator_annotated/ID000_clinic_demo/ID000_clinic_demo.timeline5.xml.txt	531
ctakes-examples/src/user/resources/org/apache/ctakes/examples/annotation/knowtator_annotated/ID000_clinic_demo/ID000_clinic_demo.txt	79
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/README.md	1
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/setup.cfg	25
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/setup.py	3
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/src/ctakes_cnlpt/__init__.py	1
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/src/ctakes_cnlpt/ae/__init__.py	1
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/src/ctakes_cnlpt/ae/doctimerel_delegator.py	34
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/src/ctakes_cnlpt/ae/negation_delegator.py	39
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/src/ctakes_cnlpt/ae/temporal_delegator.py	88
ctakes-examples/src/user/resources/org/apache/ctakes/examples/ctakes_cnlpt_py/src/ctakes_cnlpt/negation_pipeline.py	14
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/annotated/ID000_clinic_demo.txt	79
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/apache_con/Patient456/Adult/snake_bite.txt	3
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/apache_con/Patient456/CasedExample.txt	14
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/apache_con/Patient456/Pediatric/shark_bite.txt	3
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/apache_con/basic/Patient123/Patient123_25122019_RAD.txt	20
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/apache_con/basic/Patient123/Patient123_31122018_PATH.txt	23
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/apache_con/basic/Patient123/Patient123_31122019_NOTE.txt	21
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/cda/testpatient_cn_1.xml	330
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/cda/testpatient_cn_2.xml	254
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/small/dr_nutritious_1.txt	9
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/small/dr_nutritious_2.txt	9
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/small/edge_cases_plaintext_1.txt	2
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/small/pain_no_swelling.txt	3
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/smoker/doc1_07543210_sample_current.txt	2
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/smoker/doc1_07543210_sample_past_smoker.txt	15
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/smoker/doc1_07543210_sample_unknown.txt	105
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/smoker/doc2_07543210_sample_current.txt	119
ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/smoker/doc2_07543210_sample_past_smoker.txt	32
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/ConversionSources.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/CtakesDrugTuis.txt	22
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/CtakesSnomedTuis.txt	36
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/CtakesSources.txt	2
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/ModifierSuffixes.txt	15
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalColonTriggers.txt	21
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalFunctionTriggers.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalPrefixTriggers.txt	2
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RemovalSuffixTriggers.txt	33
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/RightAbbreviations.txt	1178
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/UnwantedPrefixes.txt	30
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/default/UnwantedSuffixes.txt	1023
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesAllTuis.txt	59
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesAnatTuis.txt	8
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesDisoTuis.txt	9
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesFindTuis.txt	12
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/CtakesProcTuis.txt	3
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/UmlsAllSources.txt	63
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/optional/UmlsAllTuis.txt	148
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/ConversionSources.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/CtakesDrugTuis.txt	22
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/CtakesSnomedTuis.txt	36
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/CtakesSources.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/ModifierSuffixes.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RemovalColonTriggers.txt	38
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RemovalPrefixTriggers.txt	30
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RemovalSuffixTriggers.txt	239
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/RightAbbreviations.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/UnwantedPrefixes.txt	3
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/small/UnwantedSuffixes.txt	806
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/ConversionSources.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/ModifierSuffixes.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalColonTriggers.txt	38
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalFunctionTriggers.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalPrefixTriggers.txt	30
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RemovalSuffixTriggers.txt	249
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/RightAbbreviations.txt	8
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimDrugTuis.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimNonDrugSources.txt	55
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimOtherTuis.txt	33
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/TimSpecificTuis.txt	19
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/UnwantedPrefixes.txt	3
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/UnwantedSuffixes.txt	902
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tim/emptyAnatTuis.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/ConversionSources.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesAnatTuis.txt	8
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesDrugTuis.txt	22
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesSnomedTuis.txt	36
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/CtakesSources.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/KeepPrefixTriggers.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/ModifierSuffixes.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalColonTriggers.txt	38
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalFunctionTriggers.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalPrefixTriggers.txt	38
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RemovalSuffixTriggers.txt	1018
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/RightAbbreviations.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedCuis.txt	6
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedPrefixes.txt	1
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedSuffixes.txt	4
ctakes-gui/src/main/resources/org/apache/ctakes/gui/dictionary/data/tiny/UnwantedTexts.txt	60
ctakes-lvg/src/main/resources/org/apache/ctakes/lvg/data/HSqlDb/lvg2008.properties	6
ctakes-lvg/src/main/resources/org/apache/ctakes/lvg/data/ReadMe.txt	9
ctakes-lvg/src/main/resources/org/apache/ctakes/lvg/data/config/lvg.properties	88
ctakes-ne-contexts/README.md	9
ctakes-pbj/README.md	30
ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/ctakes_pbj_py/README.md	115
ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/ctakes_pbj_py/src/ctakes_pbj/examples/__init__.py	1
ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/ctakes_pbj_py/src/ctakes_pbj/examples/sentence_printer.py	11
ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/ctakes_pbj_py/src/ctakes_pbj/examples/sentence_printer_pipeline.py	14
ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/ctakes_pbj_py/src/ctakes_pbj/examples/word_finder.py	32
ctakes-pbj/src/user/resources/org/apache/ctakes/pbj/ctakes_pbj_py/src/ctakes_pbj/examples/word_finder_pipeline.py	13
ctakes-pos-tagger/README.md	3
ctakes-pos-tagger/src/main/resources/org/apache/ctakes/pos/tagger/data/pos/training/sample/sample-pos-training.txt	6
ctakes-pos-tagger/src/test/resources/data/output/unit-test-2lines-tag-dictionary.included.txt	36
ctakes-pos-tagger/src/test/resources/data/unit-test-2lines-training-data.txt	2
ctakes-pos-tagger/src/test/resources/data/unit-test-training-data.txt	500
ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated.txt	3922
ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated_sample.txt	11
ctakes-relation-extractor/README.md	2
ctakes-side-effect/README.md	13
ctakes-side-effect/src/main/resources/org/apache/ctakes/side/effect/sample_note.txt	9
ctakes-smoking-status/README.md	12
ctakes-smoking-status/metadata/PEAR.properties	21
ctakes-smoking-status/src/main/resources/org/apache/ctakes/smoking/status/test/doc1_07543210_sample_current.txt	2
ctakes-smoking-status/src/main/resources/org/apache/ctakes/smoking/status/test/doc1_07543210_sample_past_smoker.txt	15
ctakes-smoking-status/src/main/resources/org/apache/ctakes/smoking/status/test/doc1_07543210_sample_unknown.txt	105
ctakes-smoking-status/src/main/resources/org/apache/ctakes/smoking/status/test/doc2_07543210_sample_current.txt	119
ctakes-smoking-status/src/main/resources/org/apache/ctakes/smoking/status/test/doc2_07543210_sample_past_smoker.txt	32
ctakes-smoking-status/src/main/resources/org/apache/ctakes/smoking/status/test/output/record_resolution.txt	5
ctakes-temporal/README.md	57
ctakes-temporal/src/main/resources/org/apache/ctakes/temporal/section/DefaultMedSections.txt	16
ctakes-temporal/src/main/resources/org/apache/ctakes/temporal/section/ccda_sections.txt	11
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/keras/reqs.txt	10
ctakes-temporal/src/user/resources/org/apache/ctakes/temporal/scripts/nn/reqs.txt	10
ctakes-type-system/src/main/resources/META-INF/org.apache.uima.fit/types.txt	9
ctakes-user-resources/README.md	8
ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/attributes_to_ignore.properties	18
ctakes-web-rest/README.md	29
ctakes-web-rest/src/main/resources/META-INF/org.uimafit/types.txt	1
ctakes-ytex-uima/README.md	10
ctakes-ytex-uima/src/test/resources/log4j_not.properties	37
ctakes-ytex-web/README.md	12
ctakes-ytex/README.md	66
ctakes-ytex/scripts/data/examples/fracture_demo.txt	31
ctakes-ytex/scripts/data/examples/fracture_demo.xml	11
ctakes-ytex/scripts/data/mssql/umls/readme.txt	12
ctakes-ytex/scripts/data/mysql/umls/readme.txt	103
ctakes-ytex/scripts/data/ref_uima_type.txt	38
ctakes-ytex/scripts/data/stopword.txt	360
ctakes-ytex/scripts/data/umls/umls_aui_fword.txt	2822
ctakes-ytex/scripts/data/umls/umls_tty.txt	309
ctakes-ytex/scripts/data/umls/v_snomed_fword_lookup.txt	2733
ctakes-ytex/src/main/resources/org/apache/ctakes/jdl/xdl.xsd	110
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/negex/negex_triggers.txt	277
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/negex/negex_triggers_orig.txt	272
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/uima/annotators/negex_excluded_keys.txt	42
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/uima/annotators/negex_triggers.txt	310
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/web/messages.properties	30
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/web/search-msh.mysql.properties	28
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/web/search-sct.mysql.properties	37
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/web/search.mssql.properties	60
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/web/search.mysql.properties	62
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/web/search.orcl.properties	64
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/ytex-default.properties	26
ctakes-ytex/src/main/resources/org/apache/ctakes/ytex/ytex-umls.properties	20
ctakes-ytex/src/test/resources/log4j_not.properties	37
ctakes-ytex/src/test/resources/maps.properties	22
ctakes-ytex/src/test/resources/org/apache/ctakes/ytex/ytex.hsqldb.properties	39
ctakes-ytex/src/test/resources/org/apache/ctakes/ytex/ytex.mssql.properties	39
ctakes-ytex/src/test/resources/org/apache/ctakes/ytex/ytex.mysql.properties	41
ctakes-ytex/src/test/resources/org/apache/ctakes/ytex/ytex.orcl.properties	42
testfile.txt	1