- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Test data path like ".*/testdata/.*" 35 files: ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/edge_cases_plaintext_1.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/text1.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/testfakenote.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/testpatient_plaintext_1.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/testpatient_plaintext_2.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/doc2_07543210_sample_past_smoker.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/doc1_07543210_sample_unknown.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/doc1_07543210_sample_past_smoker.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/doc2_07543210_sample_current.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/doc1_07543210_sample_current.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_past_smoker.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/sample_note.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/testfakenote.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_current.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/sample_note_plaintext.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/testpatient_plaintext_1.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/testpatient_plaintext_2.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/text1.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_past_smoker.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/sample_note.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/testfakenote.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_current.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/sample_note_plaintext.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_1.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_2.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/text1.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_past_smoker.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/edge_cases_plaintext_1.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_current.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Binaries for distribution path like ".*/bin/.*" 26 files: ctakes-distribution/src/main/bin/runPiperFile.sh ctakes-distribution/src/main/bin/runctakesCPE.bat ctakes-distribution/src/main/bin/runPiperGUI.sh ctakes-distribution/src/main/bin/ytexweb.sh ctakes-distribution/src/main/bin/runPiperSubmitter.bat ctakes-distribution/src/main/bin/runDictionaryCreator.sh ctakes-distribution/src/main/bin/runPiperSubmitter.sh ctakes-distribution/src/main/bin/runctakesCVD.sh ctakes-distribution/src/main/bin/runClinicalPipeline.sh ctakes-distribution/src/main/bin/deprecated-setenv.bat ctakes-distribution/src/main/bin/deprecated-ctakes.profile ctakes-distribution/src/main/bin/runPiperCreator.sh ctakes-distribution/src/main/bin/runPiperCreator.bat ctakes-distribution/src/main/bin/runctakesCPE.sh ctakes-distribution/src/main/bin/runPiperGUI.bat ctakes-distribution/src/main/bin/ytexweb.bat ctakes-distribution/src/main/bin/runClinicalPipeline.bat ctakes-distribution/src/main/bin/setenv.sh ctakes-distribution/src/main/bin/setenv.bat ctakes-distribution/src/main/bin/getUmlsDictionary.bat ctakes-distribution/src/main/bin/deprecated-ant.bat ctakes-distribution/src/main/bin/runDictionaryCreator.bat ctakes-distribution/src/main/bin/runPiperFile.bat ctakes-distribution/src/main/bin/OpenCmd.bat ctakes-distribution/src/main/bin/getUmlsDictionary.sh ctakes-distribution/src/main/bin/runctakesCVD.bat - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Too long lines (1000+ characters) 24 files: ctakes-drug-ner/src/main/resources/org/apache/ctakes/drug/ner/data/cda/testpatient_cn_1.xml ctakes-examples/src/user/resources/org/apache/ctakes/examples/notes/small/SampleInputRadiologyNotes.txt ctakes-tiny-rest/src/main/webapp/js/jquery.js ctakes-preprocessor/src/test/data/output/testpatient_cn_1.xml.included.xml ctakes-preprocessor/src/test/resources/testpatient_cn_1.xml ctakes-pos-tagger/src/test/resources/data/GENIAcorpus3.02.pos.test.xml ctakes-web-rest/src/main/webapp/js/jquery.js ctakes-smoking-status/src/main/resources/org/apache/ctakes/smoking/status/test/cda/testpatient_cn_1.xml ctakes-smoking-status/metadata/setenv.txt ctakes-smoking-status/metadata/install.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/cda/testpatient_cn_2.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/cda/testpatient_cn_1.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/input/plaintext/SampleInputRadiologyNotes.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_unknown.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_current.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/SampleInputRadiologyNotes.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_past_smoker.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_past_smoker.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_unknown.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_current.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/SampleInputRadiologyNotes.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml ctakes-coreference/metadata/install.xml ctakes-constituency-parser/metadata/install.xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Too long file (1000000+ bytes) 6 files: ctakes-temporal/desc/analysis_engine/TemporalAggregatePipeline.xml ctakes-clinical-pipeline/desc/analysis_engine/auto/defaultPipeline.xml git-history.txt ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_unknown.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_current.txt.xml ctakes-regression-test/src/main/resources/org/apache/ctakes/regression/test/testdata/expectedoutput/CoreferenceCPETest/SampleInputRadiologyNotes.txt.xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Hidden files and folders path like ".*/[.][a-zA-Z0-9_]+.*" 5 files: ctakes-examples/.gitignore .gitignore .asf.yaml ctakes-pbj/.gitignore .gitattributes - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Documentation path like ".*/docs/.*" 3 files: ctakes-relation-extractor/docs/knowtator.txt ctakes-relation-extractor/docs/readme.txt ctakes-relation-extractor/docs/todo.txt - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Dependencies path like ".*/extern(al)?/.*" 1 files: ctakes-core/src/main/java/org/apache/ctakes/core/util/external/SystemUtil.java - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -