ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml

<?xml version="1.0" encoding="UTF-8"?>
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<analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
    <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
    <primitive>false</primitive>
    <delegateAnalysisEngineSpecifiers>
        <delegateAnalysisEngine key="LocationOfRelationExtractorAnnotator">
            <analysisEngineDescription>
                <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
                <primitive>true</primitive>
                <annotatorImplementationName>org.apache.ctakes.relationextractor.ae.LocationOfRelationExtractorAnnotator</annotatorImplementationName>
                <analysisEngineMetaData>
                    <name>LocationOfRelationExtractorAnnotator</name>
                    <description>Descriptor automatically generated by uimaFIT</description>
                    <version>unknown</version>
                    <vendor>org.apache.ctakes.relationextractor.ae</vendor>
                    <configurationParameters>
                        <configurationParameter>
                            <name>ProbabilityOfKeepingANegativeExample</name>
                            <description>probability that a negative example should be retained for training</description>
                            <type>Float</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>classifierFactoryClassName</name>
                            <description>provides the full name of the ClassifierFactory class to be used.</description>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>dataWriterFactoryClassName</name>
                            <description>provides the full name of the DataWriterFactory class to be used.</description>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>isTraining</name>
                            <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
                            <type>Boolean</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>classifierJarPath</name>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                    </configurationParameters>
                    <configurationParameterSettings>
                        <nameValuePair>
                            <name>classifierFactoryClassName</name>
                            <value>
                                <string>org.cleartk.ml.jar.JarClassifierFactory</string>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>dataWriterFactoryClassName</name>
                            <value>
                                <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>ProbabilityOfKeepingANegativeExample</name>
                            <value>
                                <float>0.5</float>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>classifierJarPath</name>
                            <value>
                                <string>/org/apache/ctakes/relation/extractor/models/location_of/model.jar</string>
                            </value>
                        </nameValuePair>
                    </configurationParameterSettings>
                    <typeSystemDescription>
                        <imports>
                            <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
                        </imports>
                    </typeSystemDescription>
                    <typePriorities/>
                    <fsIndexCollection/>
                    <capabilities/>
                    <operationalProperties>
                        <modifiesCas>true</modifiesCas>
                        <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
                        <outputsNewCASes>false</outputsNewCASes>
                    </operationalProperties>
                </analysisEngineMetaData>
            </analysisEngineDescription>
        </delegateAnalysisEngine>
        <delegateAnalysisEngine key="RelationExtractorPreprocessor">
            <analysisEngineDescription>
                <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
                <primitive>false</primitive>
                <delegateAnalysisEngineSpecifiers>
                    <delegateAnalysisEngine key="TokenizerAnnotator">
                        <import location="../../../ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="ClearNLPAE">
                        <import location="../../../ctakes-dependency-parser/desc/analysis_engine/ClearNLPDependencyParserAE.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="ContextDependentTokenizerAnnotator">
                        <import location="../../../ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="ConstituencyParser">
                        <import location="../../../ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="StatusAnnotator">
                        <import location="../../../ctakes-ne-contexts/desc/StatusAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="NegationAnnotator">
                        <import location="../../../ctakes-ne-contexts/desc/NegationAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="SentenceDetectorAnnotator">
                        <import location="../../../ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="AdjustNounPhraseToIncludeFollowingNP">
                        <import location="../../../ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="AdjustNounPhraseToIncludeFollowingPPNP">
                        <import location="../../../ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="SimpleSegmentAnnotator">
                        <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/SimpleSegmentAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="POSTagger">
                        <import location="../../../ctakes-pos-tagger/desc/POSTagger.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="Chunker">
                        <import location="../../../ctakes-chunker/desc/Chunker.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="DictionaryLookupAnnotatorDB">
                        <import location="../../../ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="LookupWindowAnnotator">
                        <import location="../../../ctakes-clinical-pipeline/desc/analysis_engine/LookupWindowAnnotator.xml"/>
                    </delegateAnalysisEngine>
                    <delegateAnalysisEngine key="LvgAnnotator">
                        <import location="../../../ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml"/>
                    </delegateAnalysisEngine>
                </delegateAnalysisEngineSpecifiers>
                <analysisEngineMetaData>
                    <name>RelationExtractorPreprocessor</name>
                    <description>Same as AggregateRelationExtractorUMLSProcessor, without the RelationExtractorAnnotator.</description>
                    <version/>
                    <vendor/>
                    <configurationParameters searchStrategy="language_fallback">
                        <configurationParameter>
                            <name>SegmentID</name>
                            <description/>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                            <overrides>
                                <parameter>SimpleSegmentAnnotator/SegmentID</parameter>
                            </overrides>
                        </configurationParameter>
                        <configurationParameter>
                            <name>ChunkCreatorClass</name>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>true</mandatory>
                            <overrides>
                                <parameter>Chunker/ChunkCreatorClass</parameter>
                            </overrides>
                        </configurationParameter>
                    </configurationParameters>
                    <configurationParameterSettings>
                        <nameValuePair>
                            <name>ChunkCreatorClass</name>
                            <value>
                                <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
                            </value>
                        </nameValuePair>
                    </configurationParameterSettings>
                    <flowConstraints>
                        <fixedFlow>
                            <node>SimpleSegmentAnnotator</node>
                            <node>SentenceDetectorAnnotator</node>
                            <node>TokenizerAnnotator</node>
                            <node>LvgAnnotator</node>
                            <node>ContextDependentTokenizerAnnotator</node>
                            <node>POSTagger</node>
                            <node>ConstituencyParser</node>
                            <node>ClearNLPAE</node>
                            <node>Chunker</node>
                            <node>AdjustNounPhraseToIncludeFollowingNP</node>
                            <node>AdjustNounPhraseToIncludeFollowingPPNP</node>
                            <node>LookupWindowAnnotator</node>
                            <node>DictionaryLookupAnnotatorDB</node>
                            <node>StatusAnnotator</node>
                            <node>NegationAnnotator</node>
                        </fixedFlow>
                    </flowConstraints>
                    <typePriorities>
                        <name>Ordering</name>
                        <description>For subiterator</description>
                        <version>1.0</version>
                        <priorityList>
                            <type>org.apache.ctakes.typesystem.type.textspan.Segment</type>
                            <type>org.apache.ctakes.typesystem.type.textspan.Sentence</type>
                            <type>org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
                        </priorityList>
                        <priorityList>
                            <type>org.apache.ctakes.typesystem.type.textspan.Sentence</type>
                            <type>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</type>
                        </priorityList>
                    </typePriorities>
                    <fsIndexCollection/>
                    <capabilities>
                        <capability>
                            <inputs/>
                            <outputs>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.NewlineToken</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.WordToken</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.VP</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.refsem.UmlsConcept</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.UCP</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.TimeAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SymbolToken</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.Sentence</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.SBAR</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.RangeAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PunctuationToken</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PRT</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.PP</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.NumToken</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Lemma</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.LST</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.INTJ</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.FractionAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.structured.DocumentID</type>
                                <type allAnnotatorFeatures="true">uima.tcas.DocumentAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.DateAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopySrcAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.CopyDestAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textsem.ContextAnnotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.Chunk</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.CONJP</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
                                <type allAnnotatorFeatures="true">uima.cas.AnnotationBase</type>
                                <type allAnnotatorFeatures="true">uima.tcas.Annotation</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.ADVP</type>
                                <type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.ADJP</type>
                            </outputs>
                            <languagesSupported/>
                        </capability>
                    </capabilities>
                    <operationalProperties>
                        <modifiesCas>true</modifiesCas>
                        <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
                        <outputsNewCASes>false</outputsNewCASes>
                    </operationalProperties>
                </analysisEngineMetaData>
                <resourceManagerConfiguration/>
            </analysisEngineDescription>
        </delegateAnalysisEngine>
        <delegateAnalysisEngine key="DegreeOfRelationExtractorAnnotator">
            <analysisEngineDescription>
                <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
                <primitive>true</primitive>
                <annotatorImplementationName>org.apache.ctakes.relationextractor.ae.DegreeOfRelationExtractorAnnotator</annotatorImplementationName>
                <analysisEngineMetaData>
                    <name>DegreeOfRelationExtractorAnnotator</name>
                    <description>Descriptor automatically generated by uimaFIT</description>
                    <version>unknown</version>
                    <vendor>org.apache.ctakes.relationextractor.ae</vendor>
                    <configurationParameters>
                        <configurationParameter>
                            <name>ProbabilityOfKeepingANegativeExample</name>
                            <description>probability that a negative example should be retained for training</description>
                            <type>Float</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>classifierFactoryClassName</name>
                            <description>provides the full name of the ClassifierFactory class to be used.</description>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>dataWriterFactoryClassName</name>
                            <description>provides the full name of the DataWriterFactory class to be used.</description>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>isTraining</name>
                            <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
                            <type>Boolean</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>classifierJarPath</name>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                    </configurationParameters>
                    <configurationParameterSettings>
                        <nameValuePair>
                            <name>classifierFactoryClassName</name>
                            <value>
                                <string>org.cleartk.ml.jar.JarClassifierFactory</string>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>dataWriterFactoryClassName</name>
                            <value>
                                <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>ProbabilityOfKeepingANegativeExample</name>
                            <value>
                                <float>0.5</float>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>classifierJarPath</name>
                            <value>
                                <string>/org/apache/ctakes/relation/extractor/models/degree_of/model.jar</string>
                            </value>
                        </nameValuePair>
                    </configurationParameterSettings>
                    <typeSystemDescription>
                        <imports>
                            <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
                        </imports>
                    </typeSystemDescription>
                    <typePriorities/>
                    <fsIndexCollection/>
                    <capabilities/>
                    <operationalProperties>
                        <modifiesCas>true</modifiesCas>
                        <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
                        <outputsNewCASes>false</outputsNewCASes>
                    </operationalProperties>
                </analysisEngineMetaData>
            </analysisEngineDescription>
        </delegateAnalysisEngine>
        <delegateAnalysisEngine key="ModifierExtractorAnnotator">
            <analysisEngineDescription>
                <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
                <primitive>true</primitive>
                <annotatorImplementationName>org.apache.ctakes.relationextractor.ae.ModifierExtractorAnnotator</annotatorImplementationName>
                <analysisEngineMetaData>
                    <name>ModifierExtractorAnnotator</name>
                    <description>Descriptor automatically generated by uimaFIT</description>
                    <version>unknown</version>
                    <vendor>org.apache.ctakes.relationextractor.ae</vendor>
                    <configurationParameters>
                        <configurationParameter>
                            <name>classifierFactoryClassName</name>
                            <description>provides the full name of the ClassifierFactory class to be used.</description>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>dataWriterFactoryClassName</name>
                            <description>provides the full name of the DataWriterFactory class to be used.</description>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>isTraining</name>
                            <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
                            <type>Boolean</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                        <configurationParameter>
                            <name>classifierJarPath</name>
                            <type>String</type>
                            <multiValued>false</multiValued>
                            <mandatory>false</mandatory>
                        </configurationParameter>
                    </configurationParameters>
                    <configurationParameterSettings>
                        <nameValuePair>
                            <name>classifierFactoryClassName</name>
                            <value>
                                <string>org.cleartk.ml.jar.JarClassifierFactory</string>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>dataWriterFactoryClassName</name>
                            <value>
                                <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
                            </value>
                        </nameValuePair>
                        <nameValuePair>
                            <name>classifierJarPath</name>
                            <value>
                                <string>/org/apache/ctakes/relation/extractor/models/modifier_extractor/model.jar</string>
                            </value>
                        </nameValuePair>
                    </configurationParameterSettings>
                    <typeSystemDescription>
                        <imports>
                            <import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
                        </imports>
                    </typeSystemDescription>
                    <typePriorities/>
                    <fsIndexCollection/>
                    <capabilities/>
                    <operationalProperties>
                        <modifiesCas>true</modifiesCas>
                        <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
                        <outputsNewCASes>false</outputsNewCASes>
                    </operationalProperties>
                </analysisEngineMetaData>
            </analysisEngineDescription>
        </delegateAnalysisEngine>
    </delegateAnalysisEngineSpecifiers>
    <analysisEngineMetaData>
        <name>RelationExtractorAggregate</name>
        <configurationParameters/>
        <configurationParameterSettings/>
        <flowConstraints>
            <fixedFlow>
                <node>RelationExtractorPreprocessor</node>
                <node>ModifierExtractorAnnotator</node>
                <node>DegreeOfRelationExtractorAnnotator</node>
                <node>LocationOfRelationExtractorAnnotator</node>
            </fixedFlow>
        </flowConstraints>
        <capabilities/>
        <operationalProperties>
            <modifiesCas>true</modifiesCas>
            <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
            <outputsNewCASes>false</outputsNewCASes>
        </operationalProperties>
    </analysisEngineMetaData>
</analysisEngineDescription>