ctakes-ytex/scripts/build-nonasf.xml

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<project name="build-nonasf" default="all">
	<description>
		<![CDATA[
Create the ctakes-ytex-resources.zip that contains the following:
* umls dictionary lookup table 
* umls concept graphs
* non asf compliant jars: hibernate, weka, mysql, ms sql

Before running this:
* run the maven build
* need db with umls installed
* run the data/build.xml (so we can generate the v_snomed_fword_lookup table)
]]>
	</description>
	<import file="build-classpath.xml" />
	<property name="sqljdbc.home" value="c:/java/sqljdbc_4.0/enu" />
	<target name="all" depends="create.conceptGraph.all,export.lookup,create.resources.zip,create.lib.zip" />
	<target name="create.resources.zip">
		<delete file="../target/ctakes-ytex-resources.zip" quiet="yes" />
		<zip destfile="../target/ctakes-ytex-resources.zip">
			<!-- dictionary lookup -->
			<zipfileset prefix="resources" dir="${ytex.resources.home}" includes="org/apache/ctakes/ytex/dictionary/lookup/v_snomed_fword_lookup.txt" />
			<!-- concept graphs -->
			<zipfileset prefix="resources" dir="${ytex.resources.home}" includes="org/apache/ctakes/ytex/conceptGraph/*.gz" />
		</zip>
	</target>
	<target name="create.lib.zip">
		<delete file="../target/ctakes-ytex-lib.zip" quiet="yes" />
		<zip destfile="../target/ctakes-ytex-lib.zip">
			<!-- non-asf libraries -->
			<zipfileset prefix="lib" dir="../target/lib" includes="hibernate-*.jar,jboss-*.jar,weka-*.jar,mysql-*.jar" />
			<!-- mssql jdbc driver and authentication dlls -->
			<zipfileset prefix="lib" dir="${sqljdbc.home}" includes="sqljdbc4.jar,auth/**/*.*" />
			<!-- mssql jdbc readmes -->
			<zipfileset prefix="lib/auth" dir="${sqljdbc.home}" includes="*.txt" />
		</zip>

	</target>
	<target name="export.lookup">
		<mkdir dir="${ytex.resources.home}/org/apache/ctakes/ytex/dictionary/lookup" />
		<sql url="${db.url}" userid="${db.username}" password="${db.password}" driver="${db.driver}" classpathref="${kernel.cp}" csvColumnSeparator="&#9;" showheaders="false" showtrailers="false" print="true" output="${ytex.resources.home}/org/apache/ctakes/ytex/dictionary/lookup/v_snomed_fword_lookup.txt">
			select cui, coalesce(tui, ''), fword, coalesce(fstem,''), tok_str, coalesce(stem_str,'') from v_snomed_fword_lookup
		</sql>
	</target>
	<target name="create.conceptGraph.all">
		<antcall target="create.conceptGraph" />
		<antcall target="create.conceptGraph">
			<param name="cg.name" value="sct-rxnorm" />
		</antcall>
	</target>
	<target name="create.conceptGraph">
		<property name="cg.name" value="sct-msh-csp-aod" />
		<java classname="org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl" classpathref="${kernel.cp}" maxmemory="4g" fork="true">
			<arg value="-name" />
			<arg value="${cg.name}" />
		</java>
		<mkdir dir="${ytex.resources.home}/org/apache/ctakes/ytex/conceptGraph" />
		<copy todir="${ytex.resources.home}">
			<javaresource name="org/apache/ctakes/ytex/conceptGraph/${cg.name}.gz" classpathref="${kernel.cp}" />
		</copy>
	</target>
</project>