gsoc2013/app/scripts/registryAPI.js (23 lines):
	- line 972: // TODO throw an exception
	- line 984: // TODO throw an exception
	- line 1034: // TODO throw an exception
	- line 1046: // TODO throw an exception
	- line 1058: // TODO throw an exception
	- line 1070: // TODO throw an exception
	- line 1087: // TODO check this function
	- line 1098: // TODO throw an exception
	- line 1202: // TODO throw an exception
	- line 1214: // TODO throw an exception
	- line 1294: // TODO throw an exception
	- line 1306: // TODO throw an exception
	- line 1318: // TODO throw an exception
	- line 1363: // TODO throw an exception
	- line 1672: // TODO throw an exception
	- line 1820: // TODO throw an exception
	- line 1832: // TODO throw an exception
	- line 1844: // TODO throw an exception
	- line 1856: // TODO throw an exception
	- line 1868: // TODO throw an exception
	- line 1880: // TODO throw an exception
	- line 1983: // TODO throw an exception
	- line 2168: // TODO this will return xml file, fix this to return JSON object


gsoc2016/simstream/simstream/simstream.py (12 lines):
	- line 76: # TODO: Read in config
	- line 77: # TODO: Set up configuration dict
	- line 84: # TODO: Create new MessageParser
	- line 85: # TODO: Run message through MessageParser
	- line 86: # TODO: Route message to the correct DataReporter/EventMonitor
	- line 116: # TODO: Create and configure all DataReporters
	- line 117: # TODO: Create and configure all DataCollectors
	- line 118: # TODO: Assign each DataCollector to the correct DataReporter
	- line 126: #TODO: Create and configure all EventMonitors
	- line 127: #TODO: Create and configure all EventHandlers
	- line 128: #TODO: Assign each EventHandler to the correct EventMonitor
	- line 129: #TODO: Assign each EventMonitor to the correct DataCollector


gsoc2022/seagrid-rich-client/molview/src/js/chem/chem/molfile.js (12 lines):
	- line 31: chem.Molfile.loadRGroupFragments = true; // TODO: set to load the fragments
	- line 755: { // TODO: why do we need that?
	- line 994: // TODO: let sections follow in arbitrary order
	- line 1002: // TODO: read collection information
	- line 1289: // TODO: saving to V3000
	- line 1299: this.writeCR(); // TODO: write structure name
	- line 1478: { // TODO need to force rglabel=null when label is not 'R#'
	- line 1587: // TODO: write subtype, M SST
	- line 1635: // TODO: write M  APO
	- line 1636: // TODO: write M  AAL
	- line 1637: // TODO: write M  RGP
	- line 1638: // TODO: write M  LOG


gsoc2022/seagrid-rich-client/molview/src/js/lib/GLmol.js (10 lines):
	- line 704: if(altLoc != ' ' && altLoc != 'A') continue;//FIXME: ad hoc
	- line 832: //TODO: Implement me!
	- line 1094: * TODO: Find inner side of a ring
	- line 1255: * FIXME: Winkled tube
	- line 1545: * FIXME: Tube to cylinder transition
	- line 1843: {//to connect 3' end. FIXME: better way to do?
	- line 1878: O.normalize().multiplyScalar(nucleicAcidWidth);//TODO: refactor
	- line 2003: * TODO: Testing
	- line 2258: * TODO: Add near(atomlist, neighbor, distanceCutoff)
	- line 2259: * TODO: Add expandToResidue(atomlist)


gsoc2022/seagrid-rich-client/molview/src/js/chem/chem/struct.js (7 lines):
	- line 381: // TODO: make a consistency check on atom/s-group assignments
	- line 466: // TODO: handle reaxys generics separately
	- line 783: chem.Struct.itemSetPos = function (item, pp) // TODO: remove
	- line 1001: // TODO: need to maintain half-bond and neighbor structure permanently
	- line 1135: if(avg < 0 && !this.isReaction) // TODO [MK] this doesn't work well for reactions as the distances between
	- line 1170: // TODO: [MK] rewrite the detection algorithm to only find simple ones right away?
	- line 1313: // TODO: [MK] make sure the addition does not break the hierarchy?


gsoc2022/seagrid-rich-client/molview/src/js/chem/chem/sgroup.js (7 lines):
	- line 61: // TODO: these methods should be overridden
	- line 70: // TODO: should be group-specific
	- line 196: { // TODO: remove all non-primitive properties from 'data'
	- line 284: return; // TODO: use object box instead
	- line 413: return; // TODO: use object box instead
	- line 527: lines = lines.concat(chem.SGroup.makeAtomBondLines('SAL', idstr, util.idList(this.atomSet), atomMap)); // TODO: check atomSet
	- line 1128: // TODO: make children Map<int, Set> instead of Map<int, []>?


gsoc2016/Design Changes in Airavata/AuroraMarathonIntegration/src/main/java/org/apache/airavata/cloud/drivers/auroraDriver/AuroraAdminDriver.java (7 lines):
	- line 24: // TODO: need javadoc documentation at the top of each method
	- line 26: // TODO: individually import the types
	- line 44: // TODO: do command line validation
	- line 52: // TODO: explain why this Map data structure is needed
	- line 55: // TODO: explain what is the purpose of this List
	- line 65: // TODO: explain the purpose of this ArrayList
	- line 69: // TODO: explain when this "else" branch is taken


gsoc2016/Big-Data-Integration/MarathonIntegration/src/org/apache/airavata/cloud/marathon/driver/MarathonAdminDriver.java (7 lines):
	- line 3: // TODO: need javadoc documentation at the top of each method
	- line 5: // TODO: individually import the types
	- line 17: // TODO: do command line validation
	- line 25: // TODO: explain why this Map data structure is needed
	- line 28: // TODO: explain what is the purpose of this List
	- line 38: // TODO: explain the purpose of this ArrayList
	- line 42: // TODO: explain when this "else" branch is taken


gsoc2016/Big-Data-Integration/AuroraIntegration/src/org/apache/airavata/cloud/aurora/driver/AuroraAdminDriver.java (7 lines):
	- line 3: // TODO: need javadoc documentation at the top of each method
	- line 5: // TODO: individually import the types
	- line 17: // TODO: do command line validation
	- line 25: // TODO: explain why this Map data structure is needed
	- line 28: // TODO: explain what is the purpose of this List
	- line 38: // TODO: explain the purpose of this ArrayList
	- line 42: // TODO: explain when this "else" branch is taken


registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/impl/AiravataJPARegistry.java (6 lines):
	- line 171: //TODO check if the db connections are proper & accessible & the relevant db/tables are
	- line 1678: // TODO Auto-generated method stub
	- line 1690: // TODO Auto-generated method stub
	- line 1702: // TODO Auto-generated method stub
	- line 1761: // TODO Auto-generated method stub
	- line 1924: //TODO setup status


workflow-engine/src/main/java/org/apache/airavata/workflow/engine/component/impl/WorkflowExecutionModel.java (5 lines):
	- line 106: // TODO Auto-generated method stub
	- line 112: // TODO Auto-generated method stub
	- line 118: // TODO Auto-generated method stub
	- line 124: // TODO Auto-generated method stub
	- line 150: // TODO Auto-generated method stub


datacat/web/portal/scripts/moment.js (5 lines):
	- line 535: // TODO: remove 'name' arg after deprecation is removed
	- line 1283: // TODO: We need to take the current isoWeekYear, but that depends on
	- line 2508: // TODO: Move this out of here!
	- line 2511: // TODO: Another silent failure?
	- line 2616: // TODO (iskren): Use anchor date (like 1st Jan) to compute this.


airavata-kubernetes/web-console/src/assets/js/util/mxSvgCanvas2D.js (4 lines):
	- line 1397: // FIXME: LINE_HEIGHT not ideal for all text sizes, fix for export
	- line 1408: // TODO: Check if export needs these fixes, too
	- line 1730: // FIXME: LINE_HEIGHT not ideal for all text sizes, fix for export
	- line 1741: // TODO: Check if export needs these fixes, too


gsoc2016/simstream/simstream/eventmonitor.py (4 lines):
	- line 27: # TODO: Add method to add handlers
	- line 28: # TODO: Add method to create PikaProducer
	- line 29: # TODO: Add method to use PikaProducer to respond to events
	- line 30: # TODO: Add method to deactivate monitor


gsoc2022/seagrid-rich-client/molview/src/js/molpad/MolPad.js (4 lines):
	- line 24: * TODO: larger touch targets on high DPI screens
	- line 25: * TODO: add implicit hydrogen as subset of MPAtom
	- line 26: * TODO: collapse newly added implicit H atoms if !skeletal
	- line 27: * TODO: always on feature for select tool


gsoc2013/app/scripts/controllers/WorkflowLaunch.js (4 lines):
	- line 63: // TODO: Call some API method to make HTTP request
	- line 69: // TODO: Call some API method to make HTTP request
	- line 76: // TODO: Call some API method to make HTTP request
	- line 98: // TODO: Call some API method to make HTTP request


Interacting_with_Airavata_using_ipython_Notebook/create-experiment/thrift/protocol/TProtocol.py (4 lines):
	- line 206: (None, None, False),  # 1 TType.VOID # TODO: handle void?
	- line 221: (None, None, False),  # 16 TType.UTF8 # TODO: handle utf8 types?
	- line 222: (None, None, False)  # 17 TType.UTF16 # TODO: handle utf16 types?
	- line 288: # TODO: compare types we just decoded with thrift_spec and


workflow-monitoring-util/src/main/java/org/apache/airavata/tools/workflow/monitoring/WorkflowMonitoringException.java (4 lines):
	- line 33: // TODO Auto-generated constructor stub
	- line 38: // TODO Auto-generated constructor stub
	- line 43: // TODO Auto-generated constructor stub
	- line 48: // TODO Auto-generated constructor stub


client-api-demo/src/main/webapp/js/x_app_descriptor_edit_json.js (4 lines):
	- line 77: var applicationDescType = "Gram"; // TODO : input
	- line 81: jsonRequest["jobType"] = "single"; // TODO : input
	- line 163: var applicationDescType = "Gram"; // TODO : input
	- line 167: jsonRequest["jobType"] = "single"; // TODO : input


Interacting_with_Airavata_using_ipython_Notebook/Admin-User/thrift/protocol/TProtocol.py (4 lines):
	- line 206: (None, None, False),  # 1 TType.VOID # TODO: handle void?
	- line 221: (None, None, False),  # 16 TType.UTF8 # TODO: handle utf8 types?
	- line 222: (None, None, False)  # 17 TType.UTF16 # TODO: handle utf16 types?
	- line 288: # TODO: compare types we just decoded with thrift_spec and


airavata-kubernetes/workflow-composer/src/js/util/mxSvgCanvas2D.js (4 lines):
	- line 1397: // FIXME: LINE_HEIGHT not ideal for all text sizes, fix for export
	- line 1408: // TODO: Check if export needs these fixes, too
	- line 1730: // FIXME: LINE_HEIGHT not ideal for all text sizes, fix for export
	- line 1741: // TODO: Check if export needs these fixes, too


airavata-kubernetes/web-console/src/assets/js/handler/mxVertexHandler.js (3 lines):
	- line 1056: // TODO: Apply child offset to children in live preview
	- line 1098: // Redraws connected edges TODO: Include child edges
	- line 1273: // TODO: Reset and redraw cell states for live preview


gsoc2013/app/scripts/workflowAPI.js (3 lines):
	- line 236: // TODO handle this.
	- line 247: // TODO handle this.
	- line 264: // TODO handle this.


gsoc2013/app/scripts/controllers/RegistryConnection.js (3 lines):
	- line 54: // TODO API Call to do this
	- line 63: // TODO Check users connection to registry
	- line 66: // TODO Check users connection to registry


airavata-kubernetes/web-console/src/assets/js/view/mxCellEditor.js (3 lines):
	- line 478: // FIXME: Offset when scaled
	- line 568: // TODO: Fix word wrapping preview for edge labels in helloworld.html
	- line 602: // TODO: Update CSS width and height if smaller than minResize or remove minResize


airavata-kubernetes/workflow-composer/src/js/handler/mxVertexHandler.js (3 lines):
	- line 1056: // TODO: Apply child offset to children in live preview
	- line 1098: // Redraws connected edges TODO: Include child edges
	- line 1273: // TODO: Reset and redraw cell states for live preview


gfac-refactoring/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/impl/GramProvider.java (3 lines):
	- line 137: * TODO: algorithm for correct gatekeeper selection
	- line 375: //TODO: Review this with type
	- line 440: //TODO: Review this with type


api-mock/airavata-mock-service/src/main/java/org/apache/airavata/service/ApplicationService.java (3 lines):
	- line 81: // TODO Auto-generated catch block
	- line 84: // TODO Auto-generated catch block
	- line 87: // TODO Auto-generated catch block


gfac-refactoring/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/impl/SSHProvider.java (3 lines):
	- line 164: // TODO: Make 1> and 2> into static constants.
	- line 165: // TODO: This only works for the BASH shell. CSH and TCSH will be
	- line 278: // TODO Auto-generated method stub


osgi-airavata/server/gfac/framework/src/main/java/org/apache/airavata/gfac/framework/impl/GFacServiceImpl.java (3 lines):
	- line 44: // TODO invoke in handlers
	- line 46: // TODO invoke provider
	- line 48: // TODO invoke out handlers


airavata-kubernetes/workflow-composer/src/js/view/mxCellEditor.js (3 lines):
	- line 478: // FIXME: Offset when scaled
	- line 568: // TODO: Fix word wrapping preview for edge labels in helloworld.html
	- line 602: // TODO: Update CSS width and height if smaller than minResize or remove minResize


gsoc2013/app/scripts/workflowAPIService.js (3 lines):
	- line 224: // TODO handle this.
	- line 235: // TODO handle this.
	- line 251: // TODO handle this.


airavata-kubernetes/workflow-composer/src/js/layout/mxGraphLayout.js (2 lines):
	- line 356: // TODO: Use mxUtils.getStringSize for label bounds
	- line 418: // TODO: Use mxUtils.getStringSize for label bounds


airavata-kubernetes/web-console/src/assets/js/handler/mxConnectionHandler.js (2 lines):
	- line 1481: // TODO: Use generic method for writing constraint to style
	- line 1872: // FIXME: Should not shift if vertex was aligned (same in Java)


client-api-demo/src/main/webapp/js/x_app_descriptor_save_json.js (2 lines):
	- line 75: var applicationDescType = "Gram"; // TODO : input
	- line 79: jsonRequest["jobType"] = "single"; // TODO : input


allocation-manager/airavata-allocation-manager/airavata-allocation-manager-server/src/main/java/org/apache/airavata/allocation/manager/db/repositories/AbstractRepository.java (2 lines):
	- line 52: //FIXME do a bulk insert
	- line 64: //FIXME do a bulk update


workflow-engine/src/main/java/org/apache/airavata/workflow/engine/component/impl/WorkflowModel.java (2 lines):
	- line 42: // TODO Auto-generated method stub
	- line 48: // TODO Auto-generated method stub


airavata-kubernetes/workflow-composer/src/js/util/mxXmlRequest.js (2 lines):
	- line 288: // TODO: Check for overrideMimeType required here?
	- line 301: // TODO: Implement binary option


allocation-manager/airavata-allocation-manager/airavata-allocation-manager-server/src/main/java/org/apache/airavata/allocation/manager/server/AllocationManagerServerHandler.java (2 lines):
	- line 51: // TODO Auto-generated method stub
	- line 395: // TODO Auto-generated catch block


airavata-kubernetes/web-console/src/assets/js/view/mxCellRenderer.js (2 lines):
	- line 410: // TODO: Add handling for special touch device gestures
	- line 1253: // TODO: Factor out common code


airavata-kubernetes/web-console/src/assets/js/util/mxUtils.js (2 lines):
	- line 234: // TODO: Use delete here?
	- line 3045: // TODO: Why is the division by 5 needed in VML?


workflow-monitoring-util/src/main/java/org/apache/airavata/tools/workflow/monitoring/db/ConnectionPool.java (2 lines):
	- line 325: // TODO Auto-generated catch block
	- line 331: // TODO Auto-generated catch block


airavata-kubernetes/workflow-composer/src/js/view/mxPrintPreview.js (2 lines):
	- line 846: // FIXME: IE8 standards output problems
	- line 864: // FIXME: IE10/11 too many pages


gsoc2016/simstream/simstream/datareporter.py (2 lines):
	- line 27: # TODO: Refactor to iterate over producers, not collectors. Collectors should
	- line 29: # TODO: Add method to deactivate reporter


airavata-rest-security/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreCallbackServlet.java (2 lines):
	- line 71: //TODO remove hard coded values, once passing query parameters is
	- line 85: //TODO remove later


airavata-kubernetes/web-console/src/assets/js/layout/hierarchical/stage/mxMedianHybridCrossingReduction.js (2 lines):
	- line 315: // FIXME: Workaround to avoid negative tempRanks
	- line 515: // TODO re-implement some kind of nudge


airavata-kubernetes/workflow-composer/src/js/handler/mxConnectionHandler.js (2 lines):
	- line 1481: // TODO: Use generic method for writing constraint to style
	- line 1872: // FIXME: Should not shift if vertex was aligned (same in Java)


airavata-kubernetes/web-console/src/assets/js/view/mxPrintPreview.js (2 lines):
	- line 846: // FIXME: IE8 standards output problems
	- line 864: // FIXME: IE10/11 too many pages


airavata-kubernetes/web-console/src/assets/js/util/mxXmlRequest.js (2 lines):
	- line 288: // TODO: Check for overrideMimeType required here?
	- line 301: // TODO: Implement binary option


airavata-kubernetes/web-console/src/assets/js/layout/mxGraphLayout.js (2 lines):
	- line 356: // TODO: Use mxUtils.getStringSize for label bounds
	- line 418: // TODO: Use mxUtils.getStringSize for label bounds


registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExperimentDataRetriever.java (2 lines):
	- line 183: // FIXME : pass user ID as a regular expression
	- line 516: //FIXME : pass user ID as a regular expression


airavata-kubernetes/workflow-composer/src/js/view/mxEdgeStyle.js (2 lines):
	- line 798: // FIXME: First click in connect preview toggles orientation
	- line 928: // TODO remove magic numbers


airavata-rest-security/modules/credential-store/src/main/java/org/apache/airavata/credential/store/impl/db/CommunityUserDAO.java (2 lines):
	- line 111: String email = resultSet.getString("COMMUNITY_USER_EMAIL");  //TODO fix typo
	- line 152: String email = resultSet.getString("COMMUNITY_USER_EMAIL");  //TODO fix typo


airavata-kubernetes/workflow-composer/src/js/layout/hierarchical/stage/mxMedianHybridCrossingReduction.js (2 lines):
	- line 315: // FIXME: Workaround to avoid negative tempRanks
	- line 515: // TODO re-implement some kind of nudge


airavata-kubernetes/web-console/src/assets/js/view/mxEdgeStyle.js (2 lines):
	- line 798: // FIXME: First click in connect preview toggles orientation
	- line 928: // TODO remove magic numbers


airavata-rest-security/modules/credential-store/src/main/java/org/apache/airavata/credential/store/impl/db/CredentialsDAO.java (2 lines):
	- line 27: //TODO By any chance will we use some other database other than MySQL ?
	- line 103: //TODO By any chance will we use some other database other than MySQL ?


airavata-kubernetes/workflow-composer/src/js/util/mxMorphing.js (2 lines):
	- line 206: * Returns the top, left corner of the given cell. TODO: Improve performance
	- line 220: // TODO: Handle offsets


airavata-kubernetes/web-console/src/assets/js/util/mxMorphing.js (2 lines):
	- line 206: * Returns the top, left corner of the given cell. TODO: Improve performance
	- line 220: // TODO: Handle offsets


client-api-demo/src/main/webapp/html/x_host_save.html (2 lines):
	- line 23: // TODO : REST api should send some response back in case of a successful invocation of service.
	- line 44: // TODO : REST api should send some response back in case of a successful invocation of service.


gsoc2022/seagrid-rich-client/molview/src/js/chem/chem/smiles.js (2 lines):
	- line 53: //TODO the fix is temporary, still need to implement error handling/reporting
	- line 365: this.smiles += ':'; // TODO: Check if this : is needed


registry/registry-api/src/main/java/org/apache/airavata/registry/api/util/WebServiceUtil.java (2 lines):
	- line 134: // TODO adding this means adding a new complex type for File type
	- line 166: // TODO adding this means adding a new complex type for File type


airavata-kubernetes/workflow-composer/src/js/util/mxVmlCanvas2D.js (2 lines):
	- line 698: // FIXME: No event transparency if inside v:rect (ie part of shape)
	- line 1061: // FIXME: Clipping is relative to bounding box


airavata-kubernetes/web-console/src/assets/js/util/mxVmlCanvas2D.js (2 lines):
	- line 698: // FIXME: No event transparency if inside v:rect (ie part of shape)
	- line 1061: // FIXME: Clipping is relative to bounding box


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/ExperimentService.java (2 lines):
	- line 46: * TODO: Class level comments please
	- line 135: // TODO validate status and get a lock


airavata-kubernetes/workflow-composer/src/js/util/mxUtils.js (2 lines):
	- line 234: // TODO: Use delete here?
	- line 3045: // TODO: Why is the division by 5 needed in VML?


datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/GridChemParser.java (2 lines):
	- line 89: //FIXME: is this really necessary?
	- line 110: //FIXME make this file shared rather than re-reading it.


airavata-kubernetes/workflow-composer/src/js/view/mxCellRenderer.js (2 lines):
	- line 410: // TODO: Add handling for special touch device gestures
	- line 1253: // TODO: Factor out common code


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/process/ProcessBootstrapData.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/experiment/experiment.output.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/data-out-task/src/main/java/org/apache/airavata/helix/task/dataout/Participant.java (1 line):
	- line 14: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/process/ProcessModel.java (1 line):
	- line 32: * TODO: Class level comments please


airavata-kubernetes/modules/agents/thrift-agent/src/main/java/org/apache/airavata/agents/thrift/handler/OperationHandler.java (1 line):
	- line 11: * TODO: Class level comments please


datacat/web/portal/scripts/main.js (1 line):
	- line 539: var id = $('#' + thisId).parent().parent().find('td:first').text();         // TODO: If you change the table order, use another way to get the document id


airavata-kubernetes/modules/microservices/tasks/async-command-task/src/main/java/org/apache/airavata/helix/task/async/command/AsyncCommandTask.java (1 line):
	- line 19: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/async-event-listener/src/main/java/org/apache/airavata/async/event/listener/messaging/KafkaReceiver.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/workflow-composer/src/js/util/mxPanningManager.js (1 line):
	- line 67: // TODO: Implement graph.autoExtend


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/TaskRepository.java (1 line):
	- line 28: * TODO: Class level comments please


utils/src/main/java/org/apache/airavata/common/utils/ServiceUtils.java (1 line):
	- line 86: //FIXME: the context root will be correct after updating the web.xml


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/experiment/ExperimentInputData.java (1 line):
	- line 27: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/ApplicationIfaceService.java (1 line):
	- line 40: * TODO: Class level comments please


Interacting_with_Airavata_using_ipython_Notebook/create-experiment/apache/airavata/model/data/movement/ttypes.py (1 line):
	- line 47: FIXME: Change GSI to a more precise generic security protocol - X509


airavata-kubernetes/web-console/src/app/models/application/application.deployment.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/data/DataStoreRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/ApplicationModuleService.java (1 line):
	- line 34: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskOutPortResource.java (1 line):
	- line 4: * TODO: Class level comments please


gsoc2016/Big-Data-Integration/MarathonIntegration/src/org/apache/airavata/cloud/marathon/bigDataInjections/BigDataInjectorI.java (1 line):
	- line 10: // TODO: this interface should throw an exception


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/type/TaskInputTypeResource.java (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/ProcessService.java (1 line):
	- line 40: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-scheduler/src/main/java/org/apache/airavata/k8s/gfac/service/WorkerService.java (1 line):
	- line 37: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/Application.java (1 line):
	- line 36: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/data/DataEntryResource.java (1 line):
	- line 23: * TODO: Class level comments please


gfac-refactoring/gfac-core/src/main/java/org/apache/airavata/core/gfac/notification/impl/WorkflowTrackingNotification.java (1 line):
	- line 36: * Workflow Tracking notification TODO:: implement properly


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/compute/ComputeRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/process/ProcessResource.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/workflow-composer/src/js/shape/mxDoubleEllipse.js (1 line):
	- line 93: // FIXME: Rounding issues in IE8 standards mode (not in 1.x)


airavata-kubernetes/web-console/src/assets/js/shape/mxShape.js (1 line):
	- line 718: // FIXME: Cannot implement shadow transparency with filter


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/type/TaskOutPortType.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/task/task.model.ts (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/experiment/ExperimentInputDataRepository.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/workflow-composer/src/js/shape/mxShape.js (1 line):
	- line 718: // FIXME: Cannot implement shadow transparency with filter


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/experiment/Experiment.java (1 line):
	- line 32: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/event-sink/src/main/java/org/apache/airavata/k8s/sink/messaging/KafkaReceiver.java (1 line):
	- line 29: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationInputResource.java (1 line):
	- line 23: * TODO: Class level comments please


gsoc2013/app/scripts/controllers/ApplicationDescriptor.js (1 line):
	- line 129: // TODO: Call some API method to make HTTP request


airavata-kubernetes/web-console/src/app/models/application/application.ipnput.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/TaskDAG.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/messaging/SenderConfig.java (1 line):
	- line 35: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/application/application.module.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-generator/src/main/java/org/apache/airavata/k8s/orchestrator/messaging/SenderConfig.java (1 line):
	- line 35: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/application/ApplicationIfaceRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/process/process.status.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/agents/agent-core/src/main/java/org/apache/airavata/agents/core/AsyncCommandStatus.java (1 line):
	- line 4: * TODO: Class level comments please


gsoc2013/app/scripts/controllers/FileTransfer.js (1 line):
	- line 46: // TODO: Call some API method to make HTTP request


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ExperimentController.java (1 line):
	- line 32: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-generator/src/main/java/org/apache/airavata/k8s/orchestrator/messaging/ReceiverConfig.java (1 line):
	- line 38: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/application/ApplicationModule.java (1 line):
	- line 25: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-scheduler/src/main/java/org/apache/airavata/k8s/gfac/core/HelixWorkflowManager.java (1 line):
	- line 19: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/DataStoreController.java (1 line):
	- line 37: * TODO: Class level comments please


airavata-kubernetes/modules/agents/agent-core/src/main/java/org/apache/airavata/agents/core/StatusPublisher.java (1 line):
	- line 10: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-generator/src/main/java/org/apache/airavata/k8s/orchestrator/messaging/KafkaSender.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-scheduler/src/main/java/org/apache/airavata/k8s/gfac/messaging/ReceiverConfig.java (1 line):
	- line 39: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/type/TaskOutPortTypeRepository.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/task/type/TaskTypeService.java (1 line):
	- line 20: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-generator/src/main/java/org/apache/airavata/k8s/orchestrator/Application.java (1 line):
	- line 31: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/job/JobStatus.java (1 line):
	- line 25: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/TaskController.java (1 line):
	- line 34: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/compute/ComputeResource.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/modules/agents/agent-core/src/main/java/org/apache/airavata/agents/core/AsyncOperation.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/TaskOutputRepository.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/data/DataStoreModel.java (1 line):
	- line 29: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/command-task/src/main/java/org/apache/airavata/helix/task/command/Participant.java (1 line):
	- line 14: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/async-event-listener/src/main/java/org/apache/airavata/async/event/listener/service/ListenerService.java (1 line):
	- line 12: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/job/JobModel.java (1 line):
	- line 29: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/util/ToResourceUtil.java (1 line):
	- line 58: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentStatusResource.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/experiment/ExperimentStatusRepository.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/async-command-monitor/src/main/java/org/apache/airavata/task/async/command/monitor/Participant.java (1 line):
	- line 14: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-scheduler/src/main/java/org/apache/airavata/k8s/gfac/messaging/KafkaReceiver.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/application/application.output.model.ts (1 line):
	- line 3: * TODO: Class level comments please


grid-tools/gram-client/src/main/java/org/apache/airavata/jobsubmission/gram/GramJobSubmissionManager.java (1 line):
	- line 60: //TODO remove when porting


gsoc2013/app/scripts/regisrtyAPIService.js (1 line):
	- line 27: // TODO - Inter service communication how?


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/TaskInput.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-rest-security/modules/commons/airavata-registry-rest/src/main/java/org/apache/airavata/services/registry/rest/security/HttpAuthenticatorFilter.java (1 line):
	- line 32: //TODO make this able to read from a file as well


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/util/GraphParser.java (1 line):
	- line 20: * TODO: Class level comments please


gfac-refactoring/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/impl/LocalProvider.java (1 line):
	- line 199: // TODO Auto-generated method stub


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/application/ApplicationInterface.java (1 line):
	- line 27: * TODO: Class level comments please


airavata-kubernetes/modules/helix-task-api/src/main/java/org/apache/airavata/helix/api/AbstractTask.java (1 line):
	- line 19: * TODO: Class level comments please


airavata-kubernetes/workflow-composer/src/js/io/mxEditorCodec.js (1 line):
	- line 172: // TODO: Make more generic


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/process/ProcessBootstrapDataRepository.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/data-in-task/src/main/java/org/apache/airavata/helix/task/datain/DataInputTask.java (1 line):
	- line 20: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationOutputResource.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/application/ApplicationOutputRepository.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/impl/SSHComputeOperations.java (1 line):
	- line 28: * TODO: Class level comments please


allocation-manager/Notification-Manager/Notification-Authenticator/src/main/java/org/apache/airavata/allocation/manager/notification/authenticator/NotificationDetails.java (1 line):
	- line 35: // TODO Auto-generated catch block


airavata-kubernetes/web-console/src/app/models/process/process.model.ts (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/application/ApplicationDeployment.java (1 line):
	- line 27: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/application/application.iface.model.ts (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/agents/thrift-agent/src/main/java/org/apache/airavata/agents/thrift/server/OperationServer.java (1 line):
	- line 14: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/event-sink/src/main/java/org/apache/airavata/k8s/sink/service/EventPersistingService.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/workflow-composer/src/js/layout/hierarchical/model/mxGraphHierarchyModel.js (1 line):
	- line 389: // TODO make log comment


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/task/TaskService.java (1 line):
	- line 36: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/type/TaskOutputTypeResource.java (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ApplicationModuleController.java (1 line):
	- line 33: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskStatusResource.java (1 line):
	- line 23: * TODO: Class level comments please


allocation-manager/Notification-Manager/Notification-Sender/src/main/java/org/apache/airavata/allocation/manager/notification/sender/MailNotification.java (1 line):
	- line 48: // TODO Auto-generated catch block


airavata-kubernetes/workflow-composer/src/js/shape/mxText.js (1 line):
	- line 1038: // FIXME: Background size in quirks mode for wrapped text


gsoc2016/Design Changes in Airavata/AuroraMarathonIntegration/src/main/java/org/apache/airavata/cloud/bigDataInjections/BigDataInjectorI.java (1 line):
	- line 30: // TODO: this interface should throw an exception


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationDeploymentResource.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/experiment/experiment.model.ts (1 line):
	- line 5: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/async-command-monitor/src/main/java/org/apache/airavata/task/async/command/monitor/AsyncCommandMonitor.java (1 line):
	- line 16: * TODO: Class level comments please


airavata-kubernetes/modules/helix-task-api/src/main/java/org/apache/airavata/helix/api/HelixParticipant.java (1 line):
	- line 25: * TODO: Class level comments please


gsoc2013/app/scripts/controllers/HostDescriptor.js (1 line):
	- line 51: // TODO: Call some API method to make HTTP request


airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/impl/MockComputeOperation.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/type/TaskOutPortTypeResource.java (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentResource.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-generator/src/main/java/org/apache/airavata/k8s/orchestrator/messaging/KafkaReceiver.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/application/ApplicationDeploymentRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/workflow-composer/src/js/view/mxGraphView.js (1 line):
	- line 1975: var markerSize = 1; // TODO: include marker size


airavata-kubernetes/web-console/src/assets/js/layout/hierarchical/model/mxSwimlaneModel.js (1 line):
	- line 435: // TODO make log comment


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/WorkflowService.java (1 line):
	- line 25: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/application/ApplicationOutput.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ApplicationInterfaceController.java (1 line):
	- line 32: * TODO: Class level comments please


airavata-registry-rest/src/main/java/org/apache/airavata/services/registry/rest/resources/RegistryResource.java (1 line):
	- line 542: // TODO : Use WEbapplicationExcpetion


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/ServerRuntimeException.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/shape/mxStencil.js (1 line):
	- line 403: // TODO: Internal structure (array of special structs?), relative and absolute


gsoc2016/Design Changes in Airavata/orchestrator/orchestrator-core/src/main/java/org/apache/airavata/orchestrator/cpi/impl/SimpleOrchestratorImpl.java (1 line):
	- line 291: // TODO - breakdown unicore all in one task to multiple tasks, then we don't need to handle UNICORE here.


gfac-sample/local-echo-sample-client/src/main/java/org/apache/airavata/client/RunEchoLocalHost.java (1 line):
	- line 50: //FIXME: Read from a config file


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationIfaceResource.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-generator/src/main/java/org/apache/airavata/k8s/orchestrator/service/ExperimentLaunchService.java (1 line):
	- line 40: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/workflow/WorkflowRepository.java (1 line):
	- line 9: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/type/TaskModelType.java (1 line):
	- line 8: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/application/ApplicationModuleRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/layout/hierarchical/mxHierarchicalLayout.js (1 line):
	- line 231: // TODO indicate the problem


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/type/TaskTypeResource.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/layout/hierarchical/model/mxGraphHierarchyModel.js (1 line):
	- line 389: // TODO make log comment


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/ComputeResourceService.java (1 line):
	- line 34: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/experiment/ExperimentRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskInputResource.java (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/WorkflowController.java (1 line):
	- line 15: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/TaskOutPort.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-kubernetes/modules/agents/thrift-agent/src/main/java/org/apache/airavata/agents/thrift/operation/ThriftAgentOperation.java (1 line):
	- line 14: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/experiment/experiment.input.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ComputeResourceController.java (1 line):
	- line 32: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/TaskOutPortRepository.java (1 line):
	- line 9: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/async-command-task/src/main/java/org/apache/airavata/helix/task/async/command/Participant.java (1 line):
	- line 14: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/experiment/ExperimentOutputDataRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/helix-controller/src/main/java/org/apache/airavata/helix/HelixController.java (1 line):
	- line 13: * TODO: Class level comments please


gsoc2022/seagrid-rich-client/molview/src/js/molpad/MPAtom_calc.js (1 line):
	- line 225: //TODO: implement bonding site for collapsed groups (only left or right)


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/TaskOutput.java (1 line):
	- line 6: * TODO: Class level comments please


allocation-manager/airavata-allocation-manager/airavata-allocation-manager-server/src/main/java/org/apache/airavata/allocation/manager/server/TestServer.java (1 line):
	- line 36: // TODO Auto-generated catch block


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/TaskStatusRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/type/TaskOutputType.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/compute/compute.resource.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/type/TaskTypeRepository.java (1 line):
	- line 9: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskParamResource.java (1 line):
	- line 23: * TODO: Class level comments please


utils/src/main/java/org/apache/airavata/common/utils/XMLUtil.java (1 line):
	- line 224: // TODO namespace


grid-tools/gram-client/src/main/java/org/apache/airavata/jobsubmission/gram/notifier/GramJobLogger.java (1 line):
	- line 66: job.getIDAsString(), "[ ERROR ]", job.getError(),"TODO fix bundle loading"));


gsoc2022/seagrid-rich-client/molview/src/js/chem/chem/stereocenters.js (1 line):
	- line 569: if(center_idx != bond.begin) // TODO: check this


airavata-kubernetes/modules/microservices/event-sink/src/main/java/org/apache/airavata/k8s/sink/messaging/SenderConfig.java (1 line):
	- line 35: * TODO: Class level comments please


cwl-workflows/api.py (1 line):
	- line 21: # TODO: validate server certificate


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/process/ProcessStatusRepository.java (1 line):
	- line 26: * TODO: Class level comments please


gfac-refactoring/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/TypesGenerator.java (1 line):
	- line 137: // TODO create Metadata


airavata-kubernetes/workflow-composer/src/js/layout/hierarchical/mxSwimlaneLayout.js (1 line):
	- line 240: // TODO indicate the problem


airavata-kubernetes/workflow-composer/src/js/shape/mxStencil.js (1 line):
	- line 403: // TODO: Internal structure (array of special structs?), relative and absolute


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/type/TaskInputTypeRepository.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/data-in-task/src/main/java/org/apache/airavata/helix/task/datain/Participant.java (1 line):
	- line 14: * TODO: Class level comments please


gsoc2016/Big-Data-Integration/AuroraIntegration/src/org/apache/airavata/cloud/aurora/bigDataInjections/BigDataInjectorI.java (1 line):
	- line 10: // TODO: this interface should throw an exception


gsoc2022/seagrid-rich-client/molview/src/js/molpad/MPAtom.js (1 line):
	- line 576: //TODO: add support for collapsed groups (CH2- to H2C-, OH- to HO-, etc.)


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskDagResource.java (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/view/mxGraphView.js (1 line):
	- line 1975: var markerSize = 1; // TODO: include marker size


airavata-kubernetes/modules/helix-task-api/src/main/java/org/apache/airavata/helix/api/PropertyResolver.java (1 line):
	- line 7: * TODO: Class level comments please


gfac-refactoring/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/type/MappingFactory.java (1 line):
	- line 45: * TODO use XML meta data instead of static coding


airavata-kubernetes/workflow-composer/src/js/layout/mxPartitionLayout.js (1 line):
	- line 100: // TODO: Take into account the orientation


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/workflow/WorkflowResource.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/workflow-scheduler/src/main/java/org/apache/airavata/k8s/gfac/Application.java (1 line):
	- line 31: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/shape/mxText.js (1 line):
	- line 1038: // FIXME: Background size in quirks mode for wrapped text


airavata-kubernetes/workflow-composer/src/js/layout/hierarchical/model/mxSwimlaneModel.js (1 line):
	- line 435: // TODO make log comment


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/messaging/MessagingService.java (1 line):
	- line 27: * TODO: Class level comments please


gfac-refactoring/gfac-core/src/main/java/org/apache/airavata/core/gfac/notification/Subject.java (1 line):
	- line 29: * TODO: Think about a better way


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/workflow/Workflow.java (1 line):
	- line 10: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/event-sink/src/main/java/org/apache/airavata/k8s/sink/Application.java (1 line):
	- line 31: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskOutputResource.java (1 line):
	- line 4: * TODO: Class level comments please


workflow-monitoring-util/src/main/java/org/apache/airavata/tools/workflow/monitoring/db/JdbcStorage.java (1 line):
	- line 62: // TODO Auto-generated catch block


airavata-kubernetes/web-console/src/app/models/task/task.param.model.ts (1 line):
	- line 2: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/process/ProcessBootstrapDataResource.java (1 line):
	- line 4: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/TaskInputRepository.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentInputResource.java (1 line):
	- line 23: * TODO: Class level comments please


gfac-refactoring/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/impl/EC2Provider.java (1 line):
	- line 143: //TODO send out instance id


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/type/TaskOutputTypeRepository.java (1 line):
	- line 7: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/type/TaskInputType.java (1 line):
	- line 6: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ProcessController.java (1 line):
	- line 34: * TODO: Class level comments please


airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/api/ExecutionResult.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/io/mxEditorCodec.js (1 line):
	- line 172: // TODO: Make more generic


airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/api/ComputeOperations.java (1 line):
	- line 23: * TODO: Class level comments please


gsoc2022/seagrid-rich-client/molview/src/js/molpad/MPAtom_handler.js (1 line):
	- line 21: //TODO: calculateNewBondAngle use lone-pairs and valence


gfac-refactoring/gfac-core/src/main/java/org/apache/airavata/core/gfac/services/impl/PropertiesBasedServiceImpl.java (1 line):
	- line 236: // TODO pass the url of the registry as the first parameter


airavata-kubernetes/modules/microservices/async-event-listener/src/main/java/org/apache/airavata/async/event/listener/messaging/ReceiverConfig.java (1 line):
	- line 38: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/experiment/ExperimentOutputData.java (1 line):
	- line 27: * TODO: Class level comments please


cwl-workflows/apache/airavata/model/data/movement/ttypes.py (1 line):
	- line 44: FIXME: Change GSI to a more precise generic security protocol - X509


airavata-kubernetes/modules/microservices/async-event-listener/src/main/java/org/apache/airavata/async/event/listener/Application.java (1 line):
	- line 12: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/layout/mxPartitionLayout.js (1 line):
	- line 100: // TODO: Take into account the orientation


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/application/ApplicationInput.java (1 line):
	- line 27: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/process/ProcessRepository.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/application/ApplicationInputRepository.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/workflow-composer/src/js/layout/hierarchical/mxHierarchicalLayout.js (1 line):
	- line 231: // TODO indicate the problem


gsoc2013/app/scripts/controllers/WorkflowMonitoring.js (1 line):
	- line 43: // TODO: Call some API method to make HTTP request


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/TaskTypeController.java (1 line):
	- line 12: * TODO: Class level comments please


gfac-refactoring/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSDLGenerator.java (1 line):
	- line 229: // FIXME: This is done as factory information is not needed


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentOutputResource.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/layout/hierarchical/mxSwimlaneLayout.js (1 line):
	- line 240: // TODO indicate the problem


Interacting_with_Airavata_using_ipython_Notebook/Admin-User/apache/airavata/model/appcatalog/computeresource/ttypes.py (1 line):
	- line 168: FIXME: Change GSI to a more precise generic security protocol - X509


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/commons/ErrorModel.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/data-out-task/src/main/java/org/apache/airavata/helix/task/dataout/DataOutputTask.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/experiment/ExperimentStatus.java (1 line):
	- line 25: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskResource.java (1 line):
	- line 28: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ApplicationDeploymentController.java (1 line):
	- line 32: * TODO: Class level comments please


airavata-kubernetes/web-console/src/app/models/task/task.status.model.ts (1 line):
	- line 3: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/tasks/command-task/src/main/java/org/apache/airavata/helix/task/command/CommandTask.java (1 line):
	- line 17: * TODO: Class level comments please


gsoc2016/simstream/simstream/datacollector.py (1 line):
	- line 33: # TODO: Refactor into subclass of Thread


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/data/DataStoreService.java (1 line):
	- line 34: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/TaskStatus.java (1 line):
	- line 27: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/event-sink/src/main/java/org/apache/airavata/k8s/sink/messaging/ReceiverConfig.java (1 line):
	- line 39: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/compute/ComputeResourceModel.java (1 line):
	- line 25: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationModuleResource.java (1 line):
	- line 23: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/shape/mxDoubleEllipse.js (1 line):
	- line 93: // FIXME: Rounding issues in IE8 standards mode (not in 1.x)


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/process/ProcessStatus.java (1 line):
	- line 27: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/event-sink/src/main/java/org/apache/airavata/k8s/sink/messaging/KafkaSender.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/web-console/src/assets/js/util/mxPanningManager.js (1 line):
	- line 67: // TODO: Implement graph.autoExtend


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/service/ApplicationDeploymentService.java (1 line):
	- line 37: * TODO: Class level comments please


airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/process/ProcessStatusResource.java (1 line):
	- line 26: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/repository/task/TaskDAGRepository.java (1 line):
	- line 10: * TODO: Class level comments please


airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/model/task/TaskModel.java (1 line):
	- line 32: * TODO: Class level comments please