backend/python/pydevlake/pydevlake/subtasks.py (152 lines of code) (raw):

# Licensed to the Apache Software Foundation (ASF) under one or more # contributor license agreements. See the NOTICE file distributed with # this work for additional information regarding copyright ownership. # The ASF licenses this file to You under the Apache License, Version 2.0 # (the "License"); you may not use this file except in compliance with # the License. You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from abc import abstractmethod import json from datetime import datetime from typing import Tuple, Dict, Iterable, Generator import sqlalchemy.sql as sql from sqlmodel import Session, select from pydevlake.model import RawModel, ToolModel, DomainModel, SubtaskRun, raw_data_params from pydevlake.context import Context from pydevlake.message import RemoteProgress from pydevlake import logger class Subtask: def __init__(self, stream): self.stream = stream @property def name(self): return f'{self.verb.lower()}{self.stream.plugin_name.capitalize()}{self.stream.name.capitalize()}' @property def description(self): return f'{self.verb.capitalize()} {self.stream.plugin_name} {self.stream.name.lower()}' @property def verb(self) -> str: pass def run(self, ctx: Context, sync_point_interval=100): with Session(ctx.engine) as session: subtask_run = self._start_subtask(session, ctx.connection.id) if ctx.incremental: state = self._get_last_state(session, ctx.connection.id) else: self.delete(session, ctx) state = dict() try: records = self.fetch(state, session, ctx) progress = last_progress = 0 for data, state in records: progress += 1 self.process(data, session, ctx) if progress % sync_point_interval == 0: # Save current state subtask_run.state = json.dumps(state) session.merge(subtask_run) session.commit() # Send progress yield RemoteProgress( increment=sync_point_interval, current=progress ) last_progress = progress # Send final progress if progress != last_progress: yield RemoteProgress( increment=progress-last_progress, current=progress ) except Exception as e: logger.error(f'{type(e).__name__}: {e}') raise e subtask_run.state = json.dumps(state) subtask_run.completed = datetime.now() session.merge(subtask_run) session.commit() def _start_subtask(self, session, connection_id): subtask_run = SubtaskRun( subtask_name=self.name, connection_id=connection_id, started=datetime.now(), state=json.dumps({}) ) session.add(subtask_run) return subtask_run @abstractmethod def fetch(self, state: Dict, session: Session, ctx: Context) -> Iterable[Tuple[object, Dict]]: """ Queries the data source and returns an iterable of (data, state) tuples. The `data` can be any object. The `state` is a dict with str keys. `Fetch` is called with the last state of the last run of this subtask. """ pass @abstractmethod def process(self, data: object, session: Session, ctx: Context): """ Called for all data entries returned by `fetch`. """ pass def _get_last_state(self, session, connection_id): stmt = ( select(SubtaskRun) .where(SubtaskRun.subtask_name == self.name) .where(SubtaskRun.connection_id == connection_id) .where(SubtaskRun.completed != None) .order_by(sql.desc(SubtaskRun.started)) ) subtask_run = session.exec(stmt).first() if subtask_run is not None: return json.loads(subtask_run.state) return {} def _params(self, ctx: Context) -> str: return raw_data_params(ctx.connection.id, ctx.scope.id) @abstractmethod def delete(self, session, ctx): pass class Collector(Subtask): @property def verb(self): return 'collect' def fetch(self, state: Dict, _, ctx: Context) -> Iterable[Tuple[object, Dict]]: return self.stream.collect(state, ctx) def process(self, data: object, session: Session, ctx: Context): raw_model_class = self.stream.raw_model(session) raw_model = raw_model_class( params=self._params(ctx), data=json.dumps(data).encode('utf8') ) session.add(raw_model) def delete(self, session, ctx): raw_model = self.stream.raw_model(session) stmt = sql.delete(raw_model).where(raw_model.params == self._params(ctx)) session.execute(stmt) class SubstreamCollector(Collector): def fetch(self, state: Dict, session, ctx: Context): parent_model = self.stream.parent_stream.tool_model query = session.query(parent_model).where(parent_model.raw_data_params == self._params(ctx)) for parent in query.all(): yield from self.stream.collect(state, ctx, parent) class Extractor(Subtask): @property def verb(self): return 'extract' def fetch(self, state: Dict, session: Session, ctx: Context) -> Iterable[Tuple[object, dict]]: raw_model = self.stream.raw_model(session) query = session.query(raw_model).where(raw_model.params == self._params(ctx)) for raw in query.all(): yield raw, state def process(self, raw: RawModel, session: Session, ctx: Context): tool_model = self.stream.extract(json.loads(raw.data)) tool_model.set_raw_origin(raw) tool_model.connection_id = ctx.connection.id session.merge(tool_model) def delete(self, session, ctx): model = self.stream.tool_model session.execute(sql.delete(model).where(model.raw_data_params == self._params(ctx))) class Convertor(Subtask): @property def verb(self): return 'convert' def fetch(self, state: Dict, session: Session, ctx: Context) -> Iterable[Tuple[ToolModel, Dict]]: model = self.stream.tool_model query = session.query(model).where(model.raw_data_params == self._params(ctx)) for item in query.all(): yield item, state def process(self, tool_model: ToolModel, session: Session, ctx: Context): res = self.stream.convert(tool_model, ctx) if isinstance(res, Generator): for each in res: self._save(tool_model, each, session, ctx.connection.id) else: self._save(tool_model, res, session, ctx.connection.id) def _save(self, tool_model: ToolModel, domain_model: DomainModel, session: Session, connection_id: int): domain_model.set_tool_origin(tool_model) if isinstance(domain_model, DomainModel): domain_model.id = tool_model.domain_id() session.merge(domain_model) def delete(self, session, ctx): pass