Path	Lines of Code
taverna-activity-archetype/src/main/resources/META-INF/maven/archetype-metadata.xml	55
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/config/__classPrefix__ConfigurationPanel.java	72
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/config/__classPrefix__ConfigureAction.java	53
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/menu/__classPrefix__ConfigureMenuAction.java	65
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/serviceprovider/__classPrefix__ServiceDesc.java	72
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/serviceprovider/__classPrefix__ServiceIcon.java	44
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/serviceprovider/__classPrefix__ServiceProvider.java	54
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/view/__classPrefix__ActivityContextViewFactory.java	62
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/java/ui/view/__classPrefix__ContextualView.java	79
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/resources/META-INF/spring/context-osgi.xml	37
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity-ui/src/main/resources/META-INF/spring/context.xml	43
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity/src/main/java/__classPrefix__Activity.java	88
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity/src/main/java/__classPrefix__ActivityFactory.java	71
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity/src/main/java/__classPrefix__ActivityHealthChecker.java	52
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity/src/main/resources/spring/context-osgi.xml	28
taverna-activity-archetype/src/main/resources/archetype-resources/__rootArtifactId__-activity/src/main/resources/spring/context.xml	26
taverna-capability-api/src/main/java/org/apache/taverna/platform/capability/api/ActivityConfigurationException.java	16
taverna-capability-api/src/main/java/org/apache/taverna/platform/capability/api/ActivityNotFoundException.java	16
taverna-capability-api/src/main/java/org/apache/taverna/platform/capability/api/ActivityService.java	21
taverna-capability-api/src/main/java/org/apache/taverna/platform/capability/api/ConfigurationException.java	16
taverna-capability-api/src/main/java/org/apache/taverna/platform/capability/api/DispatchLayerConfigurationException.java	16
taverna-capability-api/src/main/java/org/apache/taverna/platform/capability/api/DispatchLayerNotFoundException.java	16
taverna-capability-api/src/main/java/org/apache/taverna/platform/capability/api/DispatchLayerService.java	15
taverna-capability-impl/src/main/java/org/apache/taverna/platform/capability/activity/impl/ActivityServiceImpl.java	101
taverna-capability-impl/src/main/java/org/apache/taverna/platform/capability/dispatch/impl/DispatchLayerServiceImpl.java	69
taverna-capability-impl/src/main/resources/META-INF/spring/taverna-capability-context-osgi.xml	12
taverna-capability-impl/src/main/resources/META-INF/spring/taverna-capability-context.xml	11
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/CMException.java	16
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/CMNotInitialisedException.java	10
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/CredentialManager.java	73
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/DistinguishedNameParser.java	15
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/JavaTruststorePasswordProvider.java	5
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/KeystoreChangedEvent.java	8
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/MasterPasswordProvider.java	16
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/ParsedDistinguishedName.java	10
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/ServiceUsernameAndPasswordProvider.java	8
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/TrustConfirmationProvider.java	5
taverna-credential-manager-api/src/main/java/org/apache/taverna/security/credentialmanager/UsernamePassword.java	52
taverna-credential-manager-impl/src/main/java/org/apache/taverna/security/credentialmanager/impl/CredentialManagerAuthenticator.java	86
taverna-credential-manager-impl/src/main/java/org/apache/taverna/security/credentialmanager/impl/CredentialManagerImpl.java	1426
taverna-credential-manager-impl/src/main/java/org/apache/taverna/security/credentialmanager/impl/DefaultMasterPasswordProvider.java	29
taverna-credential-manager-impl/src/main/java/org/apache/taverna/security/credentialmanager/impl/DistinguishedNameParserImpl.java	102
taverna-credential-manager-impl/src/main/java/org/apache/taverna/security/credentialmanager/impl/ParsedDistinguishedNameImpl.java	117
taverna-credential-manager-impl/src/main/resources/META-INF/spring/credential-manager-impl-context-osgi.xml	28
taverna-credential-manager-impl/src/main/resources/META-INF/spring/credential-manager-impl-context.xml	22
taverna-database-configuration-api/src/main/java/org/apache/taverna/configuration/database/DatabaseConfiguration.java	59
taverna-database-configuration-api/src/main/java/org/apache/taverna/configuration/database/DatabaseManager.java	11
taverna-database-configuration-impl/src/main/java/org/apache/taverna/configuration/database/impl/DatabaseConfigurationImpl.java	181
taverna-database-configuration-impl/src/main/java/org/apache/taverna/configuration/database/impl/DatabaseManagerImpl.java	110
taverna-database-configuration-impl/src/main/resources/META-INF/spring/database-context-osgi.xml	12
taverna-database-configuration-impl/src/main/resources/META-INF/spring/database-context.xml	17
taverna-dataflow-activity/src/main/java/org/apache/taverna/activities/dataflow/DataflowActivity.java	93
taverna-dataflow-activity/src/main/java/org/apache/taverna/activities/dataflow/DataflowActivityFactory.java	44
taverna-dataflow-activity/src/main/java/org/apache/taverna/activities/dataflow/DataflowActivityHealthChecker.java	15
taverna-dataflow-activity/src/main/resources/META-INF/spring/dataflow-activity-context-osgi.xml	11
taverna-dataflow-activity/src/main/resources/META-INF/spring/dataflow-activity-context.xml	9
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/AbstractExecution.java	81
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/AbstractExecutionEnvironment.java	45
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/AbstractExecutionService.java	78
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/Execution.java	19
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/ExecutionEnvironment.java	22
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/ExecutionEnvironmentService.java	7
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/ExecutionService.java	22
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/InvalidExecutionIdException.java	16
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/InvalidWorkflowException.java	16
taverna-execution-api/src/main/java/org/apache/taverna/platform/execution/api/WorkflowCompiler.java	8
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/CrossProductInputFormat.java	50
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/CrossProductInputSplit.java	48
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/CrossProductRecordReader.java	81
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/CrossProductTest.java	74
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/DotProductTest.java	69
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/TavernaInputFormat.java	21
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/TavernaInputSplit.java	35
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/TavernaMapper.java	31
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/TavernaRecordReader.java	64
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/TavernaReducer.java	17
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/Test.java	33
taverna-execution-hadoop/src/main/java/org/apache/taverna/platform/execution/impl/hadoop/TextArrayWritable.java	8
taverna-execution-hadoop/src/main/java/org/pingel/util/CrossProduct.java	102
taverna-execution-impl/src/main/java/org/apache/taverna/platform/execution/impl/ExecutionEnvironmentServiceImpl.java	101
taverna-execution-impl/src/main/resources/META-INF/spring/execution-context-osgi.xml	10
taverna-execution-impl/src/main/resources/META-INF/spring/execution-context.xml	8
taverna-execution-local/src/main/java/org/apache/taverna/platform/execution/impl/local/LocalExecution.java	166
taverna-execution-local/src/main/java/org/apache/taverna/platform/execution/impl/local/LocalExecutionEnvironment.java	48
taverna-execution-local/src/main/java/org/apache/taverna/platform/execution/impl/local/LocalExecutionMonitor.java	479
taverna-execution-local/src/main/java/org/apache/taverna/platform/execution/impl/local/LocalExecutionService.java	80
taverna-execution-local/src/main/java/org/apache/taverna/platform/execution/impl/local/LocalProcessorReport.java	120
taverna-execution-local/src/main/java/org/apache/taverna/platform/execution/impl/local/StaticProperty.java	29
taverna-execution-local/src/main/java/org/apache/taverna/platform/execution/impl/local/WorkflowToDataflowMapper.java	442
taverna-execution-local/src/main/resources/META-INF/spring/execution-local-context-osgi.xml	21
taverna-execution-local/src/main/resources/META-INF/spring/execution-local-context.xml	11
taverna-execution-remote/src/main/java/org/apache/taverna/platform/execution/impl/remote/RemoteExecution.java	44
taverna-execution-remote/src/main/java/org/apache/taverna/platform/execution/impl/remote/RemoteExecutionService.java	27
taverna-execution-remote/src/main/resources/META-INF/spring/execution-remote-context-osgi.xml	10
taverna-execution-remote/src/main/resources/META-INF/spring/execution-remote-context.xml	6
taverna-observer/src/main/java/org/apache/taverna/lang/observer/MultiCaster.java	31
taverna-observer/src/main/java/org/apache/taverna/lang/observer/Observable.java	7
taverna-observer/src/main/java/org/apache/taverna/lang/observer/Observer.java	5
taverna-observer/src/main/java/org/apache/taverna/lang/observer/SwingAwareObserver.java	19
taverna-observer/src/main/java/org/apache/taverna/lang/observer/package-info.java	1
taverna-prov-owl-bindings/src/main/java/org/apache/taverna/prov/owl/ProvModel.java	327
taverna-prov-owl-bindings/src/main/java/org/apache/taverna/prov/owl/TavernaProvModel.java	77
taverna-prov-owl-bindings/src/main/java/org/apache/taverna/prov/owl/WfprovModel.java	153
taverna-prov-owl-bindings/src/main/resources/org/apache/taverna/prov/owl/taverna-prov.ttl	133
taverna-prov/example/helloanyone.bundle/workflowrun.prov.ttl	243
taverna-prov/example/test.sparql	36
taverna-prov/src/main/java/org/apache/taverna/prov/SafeFileOutputStream.java	86
taverna-prov/src/main/java/org/apache/taverna/prov/Saver.java	316
taverna-prov/src/main/java/org/apache/taverna/prov/W3ProvenanceExport.java	703
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/Provenance.java	81
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/ProvenanceConnectorFactory.java	6
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/api/NativeAnswer.java	15
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/api/ProvenanceAccess.java	372
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/api/ProvenanceConnectorType.java	5
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/api/Query.java	49
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/api/QueryAnswer.java	17
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/connector/AbstractProvenanceConnector.java	377
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/connector/ProvenanceSQL.java	3
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/AnnotationsLoader.java	40
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/Dependencies.java	53
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/EventProcessor.java	939
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/LineageQueryResultRecord.java	111
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/LineageSQLQuery.java	24
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/Provenance.java	101
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/ProvenanceAnalysis.java	619
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/ProvenanceQuery.java	1576
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/ProvenanceWriter.java	503
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/URIGenerator.java	44
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/WorkflowDataProcessor.java	275
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/ActivityType.java	30
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/DataDocumentType.java	23
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/IterationType.java	32
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/LiteralType.java	15
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/PortType.java	32
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/PortsSequenceType.java	21
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/ProcessType.java	38
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/ProcessorType.java	29
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/types/ProvenanceEventType.java	3
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/Activity.java	52
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/Collection.java	52
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/DDRecord.java	64
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/DataBinding.java	70
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/DataLink.java	52
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/DataValueExtractor.java	4
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/DataflowInvocation.java	95
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/NestedListNode.java	45
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/Port.java	95
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/PortBinding.java	125
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/ProcessorBinding.java	53
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/ProcessorEnactment.java	126
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/ProvenanceProcessor.java	49
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/ProvenanceUtils.java	99
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/QueryPort.java	54
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/ServiceInvocation.java	134
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/Workflow.java	24
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/WorkflowRun.java	39
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/lineageservice/utils/WorkflowTree.java	40
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/opm/OPMImporter.java	344
taverna-provenanceconnector/src/main/java/org/apache/taverna/provenance/opm/OPMManager.java	229
taverna-provenanceconnector/src/main/resources/META-INF/spring/provenance-connector-context.xml	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/AbstractExternalReference.java	26
taverna-reference-api/src/main/java/org/apache/taverna/reference/ContextualizedT2Reference.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/DaoException.java	16
taverna-reference-api/src/main/java/org/apache/taverna/reference/DereferenceException.java	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/ErrorDocument.java	9
taverna-reference-api/src/main/java/org/apache/taverna/reference/ErrorDocumentDao.java	14
taverna-reference-api/src/main/java/org/apache/taverna/reference/ErrorDocumentService.java	30
taverna-reference-api/src/main/java/org/apache/taverna/reference/ErrorDocumentServiceCallback.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/ErrorDocumentServiceException.java	16
taverna-reference-api/src/main/java/org/apache/taverna/reference/ExternalReferenceBuilderSPI.java	8
taverna-reference-api/src/main/java/org/apache/taverna/reference/ExternalReferenceConstructionException.java	17
taverna-reference-api/src/main/java/org/apache/taverna/reference/ExternalReferenceSPI.java	11
taverna-reference-api/src/main/java/org/apache/taverna/reference/ExternalReferenceTranslatorSPI.java	9
taverna-reference-api/src/main/java/org/apache/taverna/reference/ExternalReferenceValidationException.java	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/Identified.java	4
taverna-reference-api/src/main/java/org/apache/taverna/reference/IdentifiedList.java	4
taverna-reference-api/src/main/java/org/apache/taverna/reference/ListDao.java	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/ListService.java	23
taverna-reference-api/src/main/java/org/apache/taverna/reference/ListServiceCallback.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/ListServiceException.java	16
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceContext.java	6
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceService.java	39
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceServiceCacheProvider.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceServiceException.java	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceServiceResolutionCallback.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSet.java	6
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSetAugmentationException.java	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSetAugmentor.java	11
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSetAugmentorCallback.java	6
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSetDao.java	16
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSetService.java	30
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSetServiceCallback.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferenceSetServiceException.java	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/ReferencedDataNature.java	6
taverna-reference-api/src/main/java/org/apache/taverna/reference/StackTraceElementBean.java	7
taverna-reference-api/src/main/java/org/apache/taverna/reference/StreamToValueConverterSPI.java	7
taverna-reference-api/src/main/java/org/apache/taverna/reference/T2Reference.java	10
taverna-reference-api/src/main/java/org/apache/taverna/reference/T2ReferenceGenerator.java	8
taverna-reference-api/src/main/java/org/apache/taverna/reference/T2ReferenceType.java	6
taverna-reference-api/src/main/java/org/apache/taverna/reference/ValueCarryingExternalReference.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/ValueToReferenceConversionException.java	15
taverna-reference-api/src/main/java/org/apache/taverna/reference/ValueToReferenceConverterSPI.java	6
taverna-reference-api/src/main/java/org/apache/taverna/reference/WorkflowRunIdEntity.java	13
taverna-reference-api/src/main/java/org/apache/taverna/reference/annotations/DeleteIdentifiedOperation.java	9
taverna-reference-api/src/main/java/org/apache/taverna/reference/annotations/GetIdentifiedOperation.java	9
taverna-reference-api/src/main/java/org/apache/taverna/reference/annotations/PutIdentifiedOperation.java	9
taverna-reference-api/src/main/java/org/apache/taverna/reference/annotations/package.html	4
taverna-reference-api/src/main/java/org/apache/taverna/reference/h3/HibernateComponentClass.java	3
taverna-reference-api/src/main/java/org/apache/taverna/reference/h3/HibernateMappedEntity.java	5
taverna-reference-api/src/main/java/org/apache/taverna/reference/h3/package.html	8
taverna-reference-api/src/main/java/org/apache/taverna/reference/package.html	43
taverna-reference-api/src/main/resources/org/apache/taverna/reference/AbstractExternalReference.hbm.xml	9
taverna-reference-impl/src/main/java/org/apache/taverna/platform/spring/jdbc/TemporaryJDBC.java	14
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taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/AbstractEntityImpl.java	23
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/AbstractErrorDocumentServiceImpl.java	63
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/AbstractListServiceImpl.java	45
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/AbstractReferenceServiceImpl.java	99
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/AbstractReferenceSetServiceImpl.java	87
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/AbstractServiceImpl.java	9
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/AbstractT2ReferenceGenerator.java	64
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/CacheAspect.java	50
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ContextualizedT2ReferenceImpl.java	29
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/EmptyReferenceContext.java	13
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ErrorDocumentImpl.java	61
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ErrorDocumentServiceImpl.java	119
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/IdentifiedArrayList.java	174
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/InMemoryErrorDocumentDao.java	34
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/InMemoryListDao.java	35
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/InMemoryReferenceSetDao.java	37
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ListServiceImpl.java	96
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ReferenceServiceImpl.java	466
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ReferenceSetAugmentorImpl.java	330
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ReferenceSetImpl.java	46
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/ReferenceSetServiceImpl.java	100
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/SimpleCacheProviderImpl.java	24
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/SimpleT2ReferenceGenerator.java	18
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/StackTraceElementBeanImpl.java	40
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/T2ReferenceImpl.java	165
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/T2ReferenceListImpl.java	28
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/TranslationPath.java	178
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/UUIDT2ReferenceGenerator.java	18
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/WriteQueueAspect.java	75
taverna-reference-impl/src/main/java/org/apache/taverna/reference/impl/package.html	5
taverna-reference-impl/src/main/resources/META-INF/spring/in-memory-reference-impl-context.xml	40
taverna-reference-impl/src/main/resources/META-INF/spring/reference-impl-context-osgi.xml	20
taverna-reference-impl/src/main/resources/META-INF/spring/reference-impl-context.xml	12
taverna-reference-impl/src/main/resources/org/apache/taverna/reference/impl/ErrorDocumentImpl.hbm.xml	36
taverna-reference-impl/src/main/resources/org/apache/taverna/reference/impl/ReferenceSetImpl.hbm.xml	19
taverna-reference-impl/src/main/resources/org/apache/taverna/reference/impl/T2ReferenceListImpl.hbm.xml	25
taverna-reference-testhelpers/src/main/java/org/apache/taverna/t2referencetest/BlueReference.java	57
taverna-reference-testhelpers/src/main/java/org/apache/taverna/t2referencetest/DummyReferenceSet.java	24
taverna-reference-testhelpers/src/main/java/org/apache/taverna/t2referencetest/GreenBuilder.java	46
taverna-reference-testhelpers/src/main/java/org/apache/taverna/t2referencetest/GreenReference.java	57
taverna-reference-testhelpers/src/main/java/org/apache/taverna/t2referencetest/GreenToRed.java	35
taverna-reference-testhelpers/src/main/java/org/apache/taverna/t2referencetest/RedReference.java	57
taverna-reference-testhelpers/src/main/java/org/apache/taverna/t2referencetest/YellowReference.java	57
taverna-reference-testhelpers/src/main/resources/META-INF/spring/reference-testhelpers-context-osgi.xml	14
taverna-reference-testhelpers/src/main/resources/META-INF/spring/reference-testhelpers-context.xml	12
taverna-reference-testhelpers/src/main/resources/org/apache/taverna/t2referencetest/BlueReference.hbm.xml	8
taverna-reference-testhelpers/src/main/resources/org/apache/taverna/t2referencetest/GreenReference.hbm.xml	8
taverna-reference-testhelpers/src/main/resources/org/apache/taverna/t2referencetest/RedReference.hbm.xml	8
taverna-reference-testhelpers/src/main/resources/org/apache/taverna/t2referencetest/YellowReference.hbm.xml	8
taverna-reference-types/src/main/resources/META-INF/spring/reference-core-extensions-context-osgi.xml	28
taverna-reference-types/src/main/resources/META-INF/spring/reference-core-extensions-context.xml	26
taverna-report-api/src/main/java/org/apache/taverna/platform/report/ActivityReport.java	14
taverna-report-api/src/main/java/org/apache/taverna/platform/report/Invocation.java	140
taverna-report-api/src/main/java/org/apache/taverna/platform/report/ProcessorReport.java	67
taverna-report-api/src/main/java/org/apache/taverna/platform/report/ReportListener.java	6
taverna-report-api/src/main/java/org/apache/taverna/platform/report/State.java	4
taverna-report-api/src/main/java/org/apache/taverna/platform/report/StatusReport.java	150
taverna-report-api/src/main/java/org/apache/taverna/platform/report/WorkflowReport.java	122
taverna-run-api/src/main/java/org/apache/taverna/platform/run/api/InvalidRunIdException.java	16
taverna-run-api/src/main/java/org/apache/taverna/platform/run/api/RunProfile.java	60
taverna-run-api/src/main/java/org/apache/taverna/platform/run/api/RunProfileException.java	16
taverna-run-api/src/main/java/org/apache/taverna/platform/run/api/RunService.java	53
taverna-run-api/src/main/java/org/apache/taverna/platform/run/api/RunStateException.java	16
taverna-run-impl/src/main/java/org/apache/taverna/platform/run/impl/Run.java	190
taverna-run-impl/src/main/java/org/apache/taverna/platform/run/impl/RunServiceImpl.java	208
taverna-run-impl/src/main/java/org/apache/taverna/platform/run/impl/WorkflowReportJSON.java	271
taverna-run-impl/src/main/resources/META-INF/spring/run-context-osgi.xml	13
taverna-run-impl/src/main/resources/META-INF/spring/run-context.xml	11
taverna-services-api/src/main/java/org/apache/taverna/services/ActivityTypeNotFoundException.java	16
taverna-services-api/src/main/java/org/apache/taverna/services/InvalidConfigurationException.java	16
taverna-services-api/src/main/java/org/apache/taverna/services/ServiceRegistry.java	15
taverna-services-impl/src/main/java/org/apache/taverna/services/impl/ServiceRegistryImpl.java	55
taverna-services-impl/src/main/resources/META-INF/spring/taverna-services-context-osgi.xml	10
taverna-services-impl/src/main/resources/META-INF/spring/taverna-services-context.xml	8
taverna-stringconstant-activity/src/main/java/org/apache/taverna/activities/stringconstant/StringConstantActivity.java	57
taverna-stringconstant-activity/src/main/java/org/apache/taverna/activities/stringconstant/StringConstantActivityFactory.java	44
taverna-stringconstant-activity/src/main/java/org/apache/taverna/activities/stringconstant/StringConstantActivityHealthChecker.java	31
taverna-stringconstant-activity/src/main/java/org/apache/taverna/activities/stringconstant/StringConstantConfigurationBean.java	14
taverna-stringconstant-activity/src/main/java/org/apache/taverna/activities/stringconstant/package.html	3
taverna-stringconstant-activity/src/main/resources/META-INF/spring/stringconstant-activity-context-osgi.xml	11
taverna-stringconstant-activity/src/main/resources/META-INF/spring/stringconstant-activity-context.xml	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AbstractAnnotatedThing.java	89
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/Annotated.java	11
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AnnotationAssertion.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AnnotationBeanSPI.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AnnotationChain.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AnnotationPerspective.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AnnotationRole.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AnnotationSourceSPI.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/AppliesTo.java	10
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/Curateable.java	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/CurationEvent.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/CurationEventBeanSPI.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/CurationEventType.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/HierarchyRole.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/HierarchyTraversal.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/Person.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/AbstractNumericRangeAssertion.java	23
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/AbstractNumericValueAssertion.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/AbstractTextualValueAssertion.java	15
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/Author.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/DescriptiveTitle.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/DocumentationUrl.java	20
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/ExampleValue.java	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/FreeTextDescription.java	14
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/HostInstitution.java	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/IdentificationAssertion.java	14
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/MimeType.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/Optional.java	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/annotationbeans/SemanticAnnotation.java	28
taverna-workflowmodel-api/src/main/java/org/apache/taverna/annotation/package.html	17
taverna-workflowmodel-api/src/main/java/org/apache/taverna/facade/FacadeListener.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/facade/ResultListener.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/facade/WorkflowInstanceFacade.java	39
taverna-workflowmodel-api/src/main/java/org/apache/taverna/facade/WorkflowRunCancellation.java	11
taverna-workflowmodel-api/src/main/java/org/apache/taverna/facade/package.html	24
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/Completion.java	41
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/Event.java	64
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/InvocationContext.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/IterationInternalEvent.java	30
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/ProcessIdentifierException.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/TokenOrderException.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/TreeCache.java	110
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/WorkflowDataToken.java	36
taverna-workflowmodel-api/src/main/java/org/apache/taverna/invocation/package.html	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/monitor/MonitorManager.java	106
taverna-workflowmodel-api/src/main/java/org/apache/taverna/monitor/MonitorNode.java	11
taverna-workflowmodel-api/src/main/java/org/apache/taverna/monitor/MonitorableProperty.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/monitor/NoSuchPropertyException.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/monitor/SteerableProperty.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/monitor/package.html	36
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/AbstractProvenanceItem.java	63
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/ActivityProvenanceItem.java	24
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/DataProvenanceItem.java	21
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/DataflowRunComplete.java	25
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/ErrorProvenanceItem.java	32
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/InputDataProvenanceItem.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/InvocationStartedProvenanceItem.java	31
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/IterationProvenanceItem.java	60
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/OutputDataProvenanceItem.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/ProcessProvenanceItem.java	38
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/ProcessorProvenanceItem.java	21
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/ProvenanceItem.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/WorkflowDataProvenanceItem.java	55
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/item/WorkflowProvenanceItem.java	42
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/reporter/ProvenanceReporter.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/provenance/vocabulary/SharedVocabulary.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/utility/TreeModelAdapter.java	116
taverna-workflowmodel-api/src/main/java/org/apache/taverna/utility/TypedTreeModel.java	12
taverna-workflowmodel-api/src/main/java/org/apache/taverna/utility/TypedTreeModelEvent.java	48
taverna-workflowmodel-api/src/main/java/org/apache/taverna/utility/TypedTreeModelListener.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/utility/package.html	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/visit/DataflowCollation.java	14
taverna-workflowmodel-api/src/main/java/org/apache/taverna/visit/HierarchyTraverser.java	171
taverna-workflowmodel-api/src/main/java/org/apache/taverna/visit/VisitKind.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/visit/VisitReport.java	162
taverna-workflowmodel-api/src/main/java/org/apache/taverna/visit/Visitor.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/AbstractOutputPort.java	14
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/AbstractPort.java	23
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/CompoundEdit.java	51
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Condition.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Configurable.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/ConfigurationException.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/ControlBoundary.java	11
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Dataflow.java	31
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/DataflowInputPort.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/DataflowOutputPort.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/DataflowPort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/DataflowValidationReport.java	11
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Datalink.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Edit.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/EditException.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Edits.java	172
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/EventForwardingOutputPort.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/EventHandlingInputPort.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/FailureTransmitter.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/FilteringInputPort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/InputPort.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/InvalidDataflowException.java	17
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Merge.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/MergeInputPort.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/MergeOutputPort.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/MergePort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/NamedWorkflowEntity.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/NamingException.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/OrderedPair.java	30
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/OutputPort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Port.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/Processor.java	30
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/ProcessorFinishedEvent.java	21
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/ProcessorInputPort.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/ProcessorOutputPort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/ProcessorPort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/RunDeletionListener.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/TokenProcessingEntity.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/WorkflowItem.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/WorkflowStructureException.java	7
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/health/DisabledActivityHealthChecker.java	22
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/health/HealthCheck.java	44
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/health/HealthChecker.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/health/RemoteHealthChecker.java	170
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/health/UnrecognizedActivityHealthChecker.java	22
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/health/package.html	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/package.html	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/AbstractActivity.java	114
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/AbstractAsynchronousActivity.java	14
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/Activity.java	21
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/ActivityAndBeanWrapper.java	25
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/ActivityConfigurationException.java	14
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/ActivityFactory.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/ActivityInputPort.java	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/ActivityOutputPort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/ActivityPort.java	4
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/AsynchronousActivity.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/AsynchronousActivityCallback.java	15
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/DisabledActivity.java	100
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/Job.java	53
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/LockedNestedDataflow.java	3
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/MonitorableAsynchronousActivity.java	10
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/NestedDataflow.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/NestedDataflowSource.java	8
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/NonExecutableActivity.java	32
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/SupersededActivity.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/UnrecognizedActivity.java	22
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/config/ActivityInputPortDefinitionBean.java	32
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/config/ActivityOutputPortDefinitionBean.java	13
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/config/ActivityPortDefinitionBean.java	42
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/activity/config/ActivityPortsDefinitionBean.java	27
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/config/ConfigurationBean.java	10
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/config/ConfigurationProperty.java	18
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/AbstractDispatchLayer.java	63
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/AbstractErrorHandlerLayer.java	125
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/DispatchLayer.java	17
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/DispatchLayerFactory.java	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/DispatchStack.java	19
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/NotifiableLayer.java	6
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/PropertyContributingDispatchLayer.java	5
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/description/DispatchLayerErrorReaction.java	15
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/description/DispatchLayerJobQueueReaction.java	15
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/description/DispatchLayerJobReaction.java	15
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/description/DispatchLayerResultCompletionReaction.java	15
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/description/DispatchLayerStateEffect.java	11
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/description/SupportsStreamedResult.java	11
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/events/DispatchErrorEvent.java	50
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/events/DispatchJobEvent.java	42
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/events/DispatchResultEvent.java	41
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/AbstractIterationStrategyNode.java	134
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/CrossProduct.java	93
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/DotProduct.java	63
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/IterationStrategy.java	10
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/IterationStrategyStack.java	10
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/IterationTypeMismatchException.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/MissingIterationInputException.java	16
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/NamedInputPortNode.java	47
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/processor/iteration/TerminalNode.java	12
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/serialization/DeserializationException.java	10
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taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/utils/AnnotationTools.java	135
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/utils/NamedWorkflowEntityComparator.java	10
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/utils/PortComparator.java	9
taverna-workflowmodel-api/src/main/java/org/apache/taverna/workflowmodel/utils/Tools.java	498
taverna-workflowmodel-api/src/main/resources/META-INF/spring/workflowmodel-api-context-osgi.xml	20
taverna-workflowmodel-api/src/main/resources/META-INF/spring/workflowmodel-api-context.xml	18
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/CoreDispatchLayerFactory.java	56
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/ErrorBounce.java	213
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/Failover.java	62
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/IntermediateProvenance.java	266
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/Invoke.java	245
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/Loop.java	315
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/LoopConfiguration.java	49
taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/Parallelize.java	298
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taverna-workflowmodel-extensions/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/layers/Stop.java	90
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taverna-workflowmodel-extensions/src/main/resources/META-INF/spring/workflowmodel-core-extensions-context-osgi.xml	9
taverna-workflowmodel-extensions/src/main/resources/META-INF/spring/workflowmodel-core-extensions-context.xml	7
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/annotation/impl/AnnotationAssertionImpl.java	89
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/annotation/impl/AnnotationChainImpl.java	18
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/annotation/impl/DisputeEvent.java	38
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/annotation/impl/DisputeEventDetails.java	6
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/annotation/impl/PersonImpl.java	9
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/annotation/impl/URISource.java	17
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/facade/impl/WorkflowInstanceFacadeImpl.java	494
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/invocation/impl/InvocationContextImpl.java	42
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/monitor/impl/MonitorTreeModel.java	294
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractActivityEdit.java	29
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractAnnotationEdit.java	32
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractBinaryProcessorEdit.java	40
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractCrystalizer.java	113
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractDataflowEdit.java	28
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractDataflowInputPortEdit.java	28
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractDataflowOutputPortEdit.java	30
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractDatalinkEdit.java	28
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractEventHandlingInputPort.java	21
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractFilteringInputPort.java	98
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractMergeEdit.java	26
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/AbstractProcessorEdit.java	28
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/BasicEventForwardingOutputPort.java	41
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/ConditionImpl.java	31
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/ConfigureEdit.java	41
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/Crystalizer.java	10
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/DataflowImpl.java	403
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/DataflowInputPortImpl.java	53
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/DataflowOutputPortImpl.java	66
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/DataflowValidationReportImpl.java	54
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/DatalinkImpl.java	35
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/EditSupport.java	30
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/EditsImpl.java	1072
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taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/MergeInputPortImpl.java	20
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/MergeOutputPortImpl.java	16
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/impl/ProcessorCrystalizerImpl.java	49
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taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/processor/activity/impl/ActivityInputPortImpl.java	38
taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/processor/activity/impl/ActivityOutputPortImpl.java	24
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taverna-workflowmodel-impl/src/main/java/org/apache/taverna/workflowmodel/processor/dispatch/impl/AbstractDispatchLayerEdit.java	51
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taverna-workflowmodel-impl/src/main/resources/META-INF/spring/workflowmodel-impl-context-osgi.xml	11
taverna-workflowmodel-impl/src/main/resources/META-INF/spring/workflowmodel-impl-context.xml	9
taverna-workflowmodel-impl/src/main/resources/provenanceContext.xml	13