path	# lines of code
taverna-scufl2-wfdesc/src/main/resources/META-INF/spring/scufl2-wfdesc-context.xml	7
taverna-scufl2-wfdesc/src/main/resources/META-INF/spring/scufl2-wfdesc-context-osgi.xml	8
taverna-scufl2-wfdesc/src/main/java/org/apache/taverna/scufl2/wfdesc/ROEvoSerializer.java	48
taverna-scufl2-wfdesc/src/main/java/org/apache/taverna/scufl2/wfdesc/WfdescAgent.java	51
taverna-scufl2-wfdesc/src/main/java/org/apache/taverna/scufl2/wfdesc/WfdescSerialiser.java	255
taverna-scufl2-wfdesc/src/main/java/org/apache/taverna/scufl2/wfdesc/WfdescWriter.java	44
taverna-scufl2-wfdesc/src/main/java/org/apache/taverna/scufl2/wfdesc/WfdescReader.java	44
taverna-robundle/src/main/resources/contexts/bundle.jsonld	135
taverna-robundle/src/main/java/org/apache/taverna/robundle/Bundles.java	279
taverna-robundle/src/main/java/org/apache/taverna/robundle/validator/ValidationReport.java	60
taverna-robundle/src/main/java/org/apache/taverna/robundle/validator/RoValidator.java	80
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/odf/ODFManifest.java	117
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/odf/ODFJaxb.java	69
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/combine/CombineManifest.java	449
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/Manifest.java	381
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/PathMetadata.java	169
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/PathAnnotation.java	99
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/Agent.java	32
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/RDFToManifest.java	315
taverna-robundle/src/main/java/org/apache/taverna/robundle/manifest/Proxy.java	59
taverna-robundle/src/main/java/org/apache/taverna/robundle/utils/RecursiveCopyFileVisitor.java	168
taverna-robundle/src/main/java/org/apache/taverna/robundle/utils/RecursiveDeleteVisitor.java	31
taverna-robundle/src/main/java/org/apache/taverna/robundle/utils/PathHelper.java	11
taverna-robundle/src/main/java/org/apache/taverna/robundle/utils/TemporaryFiles.java	13
taverna-robundle/src/main/java/org/apache/taverna/robundle/utils/RDFUtils.java	63
taverna-robundle/src/main/java/org/apache/taverna/robundle/Bundle.java	88
taverna-robundle/src/main/java/org/apache/taverna/robundle/fs/BundleFileTypeDetector.java	57
taverna-robundle/src/main/java/org/apache/taverna/robundle/fs/BundleFileSystemProvider.java	512
taverna-robundle/src/main/java/org/apache/taverna/robundle/fs/BundleFileStore.java	60
taverna-robundle/src/main/java/org/apache/taverna/robundle/fs/BundlePath.java	166
taverna-robundle/src/main/java/org/apache/taverna/robundle/fs/BundleFileSystem.java	175
taverna-robundle/src/main/xsd/combine.xsd	71
taverna-robundle/src/main/xsd/container.xsd	140
taverna-robundle/src/main/xsd/xmldsig-core-schema.xsd	219
taverna-robundle/src/main/xsd/xenc-schema.xsd	127
taverna-robundle/src/main/xsd/manifest.xsd	210
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/validate/Validate.java	97
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/inspect/ProcessorNames.java	121
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/inspect/ServiceTypes.java	72
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/Tools.java	48
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/stats/GetWfStat.java	127
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/convert/ToRobundle.java	31
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/convert/Scufl2Convert.java	128
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/tools/convert/ToJson.java	226
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/TavernaCommandline.java	7
taverna-tavlang-tool/src/main/java/org/apache/taverna/tavlang/CommandLineTool.java	225
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/manifest/EncryptionData.java	40
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/manifest/Algorithm.java	23
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/manifest/KeyDerivation.java	31
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/manifest/OdfFileEntry.java	54
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/OdfPackageStream.java	41
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/TempDirDeleter.java	52
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/StreamHelper.java	30
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/OdfXMLHelper.java	163
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/TempDir.java	19
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/impl/odfdom/pkg/OdfPackage.java	1198
taverna-scufl2-ucfpackage/src/main/java/org/apache/taverna/scufl2/ucfpackage/UCFPackage.java	524
taverna-scufl2-t2flow/src/main/resources/META-INF/spring/scufl2-t2flow-context.xml	36
taverna-scufl2-t2flow/src/main/resources/META-INF/spring/scufl2-t2flow-context-osgi.xml	34
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/ParserState.java	89
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/T2Parser.java	14
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/T2FlowParser.java	1032
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/DataflowActivityParser.java	53
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/ComponentActivityParser.java	44
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/BeanshellActivityParser.java	105
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/InteractionActivityParser.java	58
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/SpreadsheetActivityParser.java	85
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/AbstractActivityParser.java	151
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/SoaplabActivityParser.java	52
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/RshellActivityParser.java	125
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/WSDLXMLSplitterParser.java	65
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/StringConstantActivityParser.java	48
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/BiomobyActivityParser.java	38
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/WSDLActivityParser.java	68
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/ApiConsomerActivityParser.java	62
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultactivities/BiomartActivityParser.java	39
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/T2FlowReader.java	126
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/t23activities/RESTActivityParser.java	124
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/t23activities/XPathActivityParser.java	82
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/t23activities/ExternalToolActivityParser.java	241
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultdispatchstack/ErrorBounceParser.java	32
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultdispatchstack/InvokeParser.java	32
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultdispatchstack/ParallelizeParser.java	48
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultdispatchstack/RetryParser.java	65
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultdispatchstack/FailoverParser.java	31
taverna-scufl2-t2flow/src/main/java/org/apache/taverna/scufl2/translator/t2flow/defaultdispatchstack/LoopParser.java	90
taverna-scufl2-wfbundle/src/main/resources/META-INF/spring/scufl2-rdfxml-context.xml	7
taverna-scufl2-wfbundle/src/main/resources/META-INF/spring/scufl2-rdfxml-context-osgi.xml	8
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/ParserState.java	82
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/impl/NamespacePrefixMapperJAXB_RI.java	30
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/RDFXMLSerializer.java	675
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/WorkflowBundleParser.java	190
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/AbstractParser.java	80
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/RevisionParser.java	129
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/RDFXMLWriter.java	108
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/WorkflowParser.java	285
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/RDFXMLReader.java	51
taverna-scufl2-wfbundle/src/main/java/org/apache/taverna/scufl2/rdfxml/ProfileParser.java	278
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/AbstractExtensionParser.java	14
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/BiomartExtensionParser.java	27
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/WsdlExtensionParser.java	26
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/ApiConsumerExtensionParser.java	27
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/AbstractProcessorExtensionParser.java	18
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/StringConstantExtensionParser.java	52
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/BiomobyExtensionParser.java	29
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/BeanshellExtensionParser.java	27
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/RshellExtensionParser.java	27
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/SoaplabExtensionParser.java	27
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/processorelement/LocalExtensionParser.java	27
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/ParserState.java	64
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/ScuflReader.java	72
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/ScuflParser.java	357
taverna-scufl2-scufl/src/main/java/org/apache/taverna/scufl2/translator/scufl/ScuflExtensionParser.java	10
taverna-ro-vocabs/src/main/resources/ontologies/bundle.owl	83
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/roterms.java	36
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/wf4ever.java	36
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/prov.java	121
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/ro.java	25
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/roevo.java	38
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/wfdesc.java	35
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/bundle.java	13
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/wfprov.java	26
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/foaf.java	91
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/oa.java	79
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/pav.java	37
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/ore.java	22
taverna-ro-vocabs/src/main/java/org/apache/taverna/ro/vocabs/package-info.java	1
taverna-scufl2-schemas/src/main/resources/org/apache/taverna/scufl2/rdf/scufl2.ttl	951
taverna-scufl2-schemas/src/main/resources/org/apache/taverna/scufl2/rdf/taverna-2.2.ttl	124
taverna-scufl2-schemas/src/main/resources/org/apache/taverna/scufl2/rdf/taverna-2.2.rdf	108
taverna-scufl2-annotation/src/main/java/org/apache/taverna/scufl2/annotation/AnnotationTools.java	149
taverna-scufl2-cwl/src/main/resources/hello_world.cwl	30
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLParser.java	46
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/CWLReader.java	35
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/InputPort.java	25
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/ProcessFactory.java	36
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/WorkflowProcess.java	149
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java	42
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Process.java	41
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Reference.java	20
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/CommandLineTool.java	50
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java	59
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/OutputPort.java	16
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/Converter.java	214
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/WorkflowParser.java	174
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/TavernaConverter.java	71
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/YAMLHelper.java	318
taverna-scufl2-examples/src/main/python/processorNames.py	87
taverna-scufl2-examples/src/main/ruby/processors.rb	57
taverna-databundle/src/main/java/org/apache/taverna/databundle/ErrorDocument.java	37
taverna-databundle/src/main/java/org/apache/taverna/databundle/DataBundles.java	486
taverna-scufl2-api/src/main/resources/META-INF/spring/scufl2-api-context.xml	11
taverna-scufl2-api/src/main/resources/META-INF/spring/scufl2-api-context-osgi.xml	14
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/configurations/Configuration.java	110
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/impl/IterableComparator.java	47
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/impl/NullSafeComparator.java	25
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/impl/LazyMap.java	32
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/DataLink.java	157
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/BlockingControlLink.java	130
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/Processor.java	137
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/ControlLink.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/Workflow.java	127
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/core/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/activity/Activity.java	111
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/activity/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/CrossProduct.java	69
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/PortNode.java	123
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/IterationStrategyTopNode.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/DotProduct.java	69
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/IterationStrategyStack.java	54
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/IterationStrategyParent.java	4
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/iterationstrategy/IterationStrategyNode.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/io/WorkflowBundleWriter.java	13
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/io/WriterException.java	16
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/io/WorkflowBundleReader.java	14
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/io/ReaderException.java	16
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/io/structure/StructureWriter.java	252
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/io/structure/StructureReader.java	384
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/io/WorkflowBundleIO.java	220
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/annotation/Revision.java	154
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/annotation/Revisioned.java	12
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/annotation/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/annotation/Annotation.java	103
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/container/WorkflowBundle.java	151
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/container/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Root.java	6
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/AbstractCloneable.java	110
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Child.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Visitor.java	63
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/URITools.java	207
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/AbstractNamed.java	117
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Configurable.java	4
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/NamedSet.java	129
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Typed.java	6
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/WorkflowBean.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Scufl2Tools.java	616
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Named.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/Ported.java	7
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/AbstractRevisioned.java	61
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/common/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/profiles/ProcessorOutputPortBinding.java	52
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/profiles/Profile.java	93
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/profiles/ProcessorInputPortBinding.java	47
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/profiles/ProcessorPortBinding.java	55
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/profiles/ProcessorBinding.java	93
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/profiles/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/InputPort.java	3
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/AbstractGranularDepthPort.java	26
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/ReceiverPort.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/OutputActivityPort.java	24
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/InputActivityPort.java	24
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/Port.java	4
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/WorkflowPort.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/DepthPort.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/OutputWorkflowPort.java	37
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/OutputProcessorPort.java	31
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/ActivityPort.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/AbstractDepthPort.java	32
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/GranularDepthPort.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/InputWorkflowPort.java	31
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/OutputPort.java	3
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/InputProcessorPort.java	31
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/SenderPort.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/port/ProcessorPort.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/reference/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/api/package-info.java	1
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/ValidationException.java	10
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/Status.java	4
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/ValidationReport.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/Validator.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/ValidationProblem.java	11
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/DispatchingVisitor.java	178
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/CorrectnessValidationListener.java	27
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/CorrectnessVisitor.java	506
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/DefaultDispatchingVisitor.java	171
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/CorrectnessValidator.java	18
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/MismatchConfigurableTypeProblem.java	20
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/NullFieldProblem.java	17
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/PortMissingFromIterationStrategyStackProblem.java	20
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/WrongParentProblem.java	12
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/NegativeValueProblem.java	23
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/OutOfScopeValueProblem.java	23
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/NonAbsoluteURIProblem.java	25
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/EmptyIterationStrategyTopNodeProblem.java	12
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/IncompatibleGranularDepthProblem.java	24
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/report/PortMentionedTwiceProblem.java	18
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/ReportCorrectnessValidationListener.java	194
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/correctness/DefaultCorrectnessValidationListener.java	60
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/WorkflowBeanReport.java	5
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/DefaultStructuralValidationListener.java	65
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/ReportStructuralValidationListener.java	149
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/StructuralValidationListener.java	28
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/IncompleteWorkflowProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/EmptyCrossProductProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/UnrecognizedIterationStrategyNodeProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/UnresolvedOutputProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/DotProductIterationMismatchProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/UnresolvedProcessorProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/MissingIterationStrategyStackProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/FailedProcessorProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/EmptyDotProductProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/report/MissingMainIncomingDataLinkProblem.java	8
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/ValidatorState.java	132
taverna-scufl2-api/src/main/java/org/apache/taverna/scufl2/validation/structural/StructuralValidator.java	314
taverna-baclava-language/src/main/java/org/apache/taverna/baclava/BaclavaReader.java	21
taverna-baclava-language/src/main/java/org/apache/taverna/baclava/BaclavaWriter.java	21