content/ns/2008/xml/t2flow/t2activities.xsd

<?xml version="1.0" encoding="UTF-8"?>
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<xsd:schema elementFormDefault="unqualified"
	targetNamespace="http://taverna.sf.net/2008/xml/t2activities"
	xmlns:activities="http://taverna.sf.net/2008/xml/t2activities"
	xmlns:tav="http://taverna.sf.net/2008/xml/t2flow" xmlns:xsd="http://www.w3.org/2001/XMLSchema"
	xmlns:jxb="http://java.sun.com/xml/ns/jaxb"
	jxb:version="1.0">

	<xsd:annotation>
		<xsd:appinfo>
			<!-- See http://docs.rakeshv.org/java/jaxb/users-guide/jaxb-custom.html -->

			<jxb:schemaBindings>
				<jxb:package name="uk.org.taverna.scufl2.xml.t2flow.jaxb" />
			</jxb:schemaBindings>
		</xsd:appinfo>
	</xsd:annotation>

	<xsd:import namespace="http://taverna.sf.net/2008/xml/t2flow"
		schemaLocation="t2flow.xsd" />

	<xsd:complexType name="DataflowConfig">
		<xsd:annotation>
			<xsd:documentation>Configuration for the nested dataflow activity.
				The actual nested dataflow is referenced by uuid to identify the
				dataflow element of the workflow container.</xsd:documentation>
		</xsd:annotation>
		<xsd:attribute name="ref" type="tav:uuid"></xsd:attribute>
	</xsd:complexType>
	<xsd:complexType name="ApiConsumerConfig">
		<xsd:sequence>

			<xsd:element name="apiConsumerName" type="xsd:string" />
			<xsd:element name="apiConsumerDescription" type="xsd:string" />
			<xsd:element name="description" type="xsd:string" />
			<xsd:element name="className" type="xsd:string" />
			<xsd:element name="methodName" type="xsd:string" />
			<xsd:element name="parameterNames" type="activities:ApiConsumerParameterNames" />

			<xsd:element name="parameterDimensions"
				type="activities:ApiConsumerParameterDimensions" />
			<xsd:element name="parameterTypes" type="activities:ApiConsumerParameterTypes" />
			<xsd:element name="returnType" type="xsd:string" />
			<xsd:element name="returnDimension" type="xsd:nonNegativeInteger" />
			<xsd:element name="isMethodStatic" type="xsd:boolean" />
			<xsd:element name="isMethodConstructor" type="xsd:boolean" />

			<xsd:element name="classLoaderSharing" type="activities:ClassLoaderSharing" />
			<xsd:element name="localDependencies" type="activities:LocalDependencies" />
			<xsd:element name="artifactDependencies" type="activities:ArtifactDependencies" />
			<xsd:element name="inputs" type="activities:ActivityInputPorts" />
			<xsd:element name="outputs" type="activities:ActivityOutputPorts" />

		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="ApiConsumerParameterNames">
		<xsd:sequence>
			<xsd:element name="string" type="xsd:string" minOccurs="0"
				maxOccurs="unbounded" />
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="ApiConsumerParameterDimensions">
		<xsd:sequence>
			<xsd:element name="int" type="xsd:nonNegativeInteger"
				minOccurs="0" maxOccurs="unbounded" />
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="ApiConsumerParameterTypes">
		<xsd:sequence>
			<xsd:element name="string" type="xsd:string" minOccurs="0"
				maxOccurs="unbounded" />
		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="BeanshellConfig">
		<xsd:annotation>
			<xsd:documentation>Configuration for the Beanshell activity.
			</xsd:documentation>
		</xsd:annotation>
		<xsd:all>
			<xsd:element name="script" type="xsd:string">
				<xsd:annotation>
					<xsd:documentation>A Beanshell script</xsd:documentation>
				</xsd:annotation>
			</xsd:element>
			<xsd:element name="dependencies" type="activities:Dependencies" />
			<xsd:element name="classLoaderSharing" type="activities:ClassLoaderSharing" />
			<xsd:element name="localDependencies" type="activities:LocalDependencies" />
			<xsd:element name="artifactDependencies" type="activities:ArtifactDependencies" />
			<xsd:element name="inputs" type="activities:ActivityInputPorts" />
			<xsd:element name="outputs" type="activities:ActivityOutputPorts" />
			<xsd:element name="localworkerName" type="xsd:string"
						minOccurs="0" />
		</xsd:all>
	</xsd:complexType>
	<xsd:complexType name="StringConstantConfig">
		<xsd:sequence>
			<xsd:sequence>
				<xsd:element name="value" type="xsd:string"></xsd:element>
			</xsd:sequence>
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="RShellConfig">
		<xsd:all>
			<xsd:element name="inputs" type="activities:ActivityInputPorts" />
			<xsd:element name="outputs" type="activities:ActivityOutputPorts" />
			<xsd:element name="rVersion" type="xsd:string" minOccurs="0" />
			<xsd:element name="script" type="xsd:string" />
			<xsd:element name="connectionSettings" type="activities:RShellConnection" />
			<xsd:element name="inputSymanticTypes" type="activities:RShellSymanticType" />
			<xsd:element name="outputSymanticTypes" type="activities:RShellSymanticType" />
		</xsd:all>
	</xsd:complexType>
	<xsd:complexType name="RShellConnection">
		<xsd:sequence>
			<xsd:element name="host" type="xsd:string" />
			<xsd:element name="port" type="xsd:unsignedShort" />
			<xsd:element name="username" type="xsd:string" minOccurs="0"/>
			<xsd:element name="password" type="xsd:string" minOccurs="0"/>
			<xsd:element name="keepSessionAlive" type="xsd:boolean" />
			<xsd:element name="newRVersion" type="xsd:boolean" default="false" minOccurs="0"/>
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="RShellSymanticType">
	<xsd:sequence>
		<xsd:element
			name="net.sf.taverna.t2.activities.rshell.RShellPortSymanticTypeBean" minOccurs="0" maxOccurs="unbounded">

			<xsd:complexType>
			<xsd:annotation>
				<xsd:appinfo>
					<jxb:class name="RShellPortSymanticTypeBean" />
				</xsd:appinfo>
			</xsd:annotation>
				<xsd:sequence>

					<xsd:element name="name" type="xsd:string" />
					<xsd:element name="symanticType">
						<xsd:complexType>
							<xsd:simpleContent>
								<xsd:extension base="xsd:string">
									<xsd:attribute name="reference" type="xsd:string"
										use="optional" />
								</xsd:extension>
							</xsd:simpleContent>
						</xsd:complexType>
					</xsd:element>
				</xsd:sequence>
			</xsd:complexType>
		</xsd:element>
	</xsd:sequence>
</xsd:complexType>


	<xsd:complexType name="WSDLConfig">
		<xsd:annotation>
			<xsd:documentation>Configuration for the WSDL activity.
			</xsd:documentation>
		</xsd:annotation>
		<xsd:sequence>
			<xsd:element name="wsdl" type="xsd:anyURI">
				<xsd:annotation>
					<xsd:documentation>Location of WSDL specification as an URL.
					</xsd:documentation>
				</xsd:annotation>
			</xsd:element>
			<xsd:element name="operation" type="xsd:string">
				<xsd:annotation>
					<xsd:documentation>Name of operation within the WSDL specification.
					</xsd:documentation>
				</xsd:annotation>
			</xsd:element>
			<xsd:element name="securityProfile" type="activities:WSDLSecurityProfile"
				minOccurs="0">
				<xsd:annotation>
					<xsd:documentation>Name of 'security profile' to apply.
					</xsd:documentation>
				</xsd:annotation>
			</xsd:element>
		</xsd:sequence>
	</xsd:complexType>

	<xsd:simpleType name="WSDLSecurityProfile">
		<xsd:union memberTypes="activities:StandardWSDLSecurityProfile xsd:string" />
	</xsd:simpleType>

	<xsd:simpleType name="StandardWSDLSecurityProfile">
		<xsd:restriction base="xsd:string">
			<xsd:enumeration value="HTTPDigestAuthN" />
			<xsd:enumeration value="HTTPBasicAuthNPlainTextPassword" />
			<xsd:enumeration value="WSSecurityTimestampUsernameTokenDigestPassword" />
			<xsd:enumeration value="WSSecurityTimestampUsernameTokenPlainTextPassword" />
			<xsd:enumeration value="WSSecurityUsernameTokenDigestPassword" />
			<xsd:enumeration value="WSSecurityUsernameTokenPlainTextPassword" />
		</xsd:restriction>
	</xsd:simpleType>

	<xsd:complexType name="XMLSplitterConfig">
		<xsd:all>
			<xsd:element name="wrappedTypeXML" type="xsd:string" />
			<xsd:element name="inputs" type="activities:ActivityInputPorts" />
			<xsd:element name="outputs" type="activities:ActivityOutputPorts" />
		</xsd:all>
	</xsd:complexType>
	<xsd:complexType name="BioMartConfig">
		<xsd:sequence>
			<xsd:element name="MartService">
				<xsd:complexType>
					<xsd:attribute name="location" type="xsd:anyURI"></xsd:attribute>
				</xsd:complexType>
			</xsd:element>
			<xsd:element name="MartDataset" />
			<xsd:element name="Query" />
		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="BioMobyConfig">
		<xsd:complexContent>
			<xsd:extension base="activities:BioMobyObjectConfig">
				<xsd:sequence>
					<xsd:element name="category" type="activities:BioMobyCategory">
					</xsd:element>
					<xsd:element name="serviceType" type="activities:BioMobyServiceType">
					</xsd:element>
					<xsd:element name="secondaries" type="activities:BioMobySecondaries">
					</xsd:element>
				</xsd:sequence>

			</xsd:extension>
		</xsd:complexContent>
	</xsd:complexType>

	<xsd:complexType name="BioMobyObjectConfig">
		<xsd:sequence>
			<xsd:element name="mobyEndpoint" type="xsd:anyURI" />
			<xsd:element name="serviceName" />
			<xsd:element name="authorityName" />

		</xsd:sequence>
	</xsd:complexType>


	<xsd:complexType name="BioMobyParserConfig">
		<xsd:sequence>
			<xsd:element name="datatypeName" />
			<xsd:element name="registryEndpoint" type="xsd:anyURI" />
			<xsd:element name="articleNameUsedByService" />

		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="SoaplabConfig">
		<xsd:annotation>
			<xsd:documentation>Configuration for the SoapLab activity.
			</xsd:documentation>
		</xsd:annotation>
		<xsd:sequence>
			<xsd:element name="endpoint" type="xsd:anyURI">
				<xsd:annotation>
					<xsd:documentation>Location of Soaplab endpoint as an URL.
					</xsd:documentation>
				</xsd:annotation>
			</xsd:element>
			<xsd:element name="pollingInterval" type="xsd:nonNegativeInteger">
				<xsd:annotation>
					<xsd:documentation>Milliseconds between polling for asynchronous
						service completion. If 0, the synchronous 'waitFor' method is
						used
						instead.
					</xsd:documentation>
				</xsd:annotation>
			</xsd:element>
			<xsd:element name="pollingBackoff" type="xsd:double">
				<xsd:annotation>
					<xsd:documentation>
						Multiplication factor to apply to current
						polling interval (initially "pollingInterval"), gradually
						increasing the polling interval. It is advisable
						to keep this close
						to 1.0, for instance 1.1.
						The polling interval will however never
						be larger than the specified
						"pollingIntervalMax". Must be
						above 0.0
						to avoid negative polling
						intervals.
					</xsd:documentation>
				</xsd:annotation>
			</xsd:element>
			<xsd:element name="pollingIntervalMax" type="xsd:nonNegativeInteger">
				<xsd:annotation>
					<xsd:documentation>Maximum polling interval in milliseconds after
						multiplying with "pollingBackoff". Should be larger than
						"pollingInterval".
					</xsd:documentation>
				</xsd:annotation>
			</xsd:element>

		</xsd:sequence>
	</xsd:complexType>


	<xsd:complexType name="SpreadsheetImportConfig">
		<xsd:sequence>
			<xsd:element name="columnRange" type="activities:SpreadsheetRange" />
			<xsd:element name="rowRange" type="activities:SpreadsheetRange" />
			<xsd:element name="emptyCellValue" type="xsd:string" />
			<xsd:element name="columnNames" type="activities:SpreadsheetColumnNames" />
			<xsd:element name="allRows" type="xsd:boolean" />
			<xsd:element name="excludeFirstRow" type="xsd:boolean" />
			<xsd:element name="ignoreBlankRows" type="xsd:boolean" />

			<xsd:element name="emptyCellPolicy" type="activities:SpreadsheetEmptyCellPolicy" />
			<xsd:element name="outputFormat" type="activities:OutputFormat" />
			<xsd:element name="csvDelimiter" type="xsd:string" />
		</xsd:sequence>
	</xsd:complexType>


	<xsd:simpleType name="SpreadsheetEmptyCellPolicy">
		<xsd:restriction base="xsd:string">
			<xsd:enumeration value="EMPTY_STRING"></xsd:enumeration>
			<xsd:enumeration value="USER_DEFINED"></xsd:enumeration>
			<xsd:enumeration value="GENERATE_ERROR"></xsd:enumeration>
		</xsd:restriction>
	</xsd:simpleType>

	<xsd:simpleType name="OutputFormat">
		<xsd:restriction base="xsd:string">
			<xsd:enumeration value="PORT_PER_COLUMN"></xsd:enumeration>
			<xsd:enumeration value="SINGLE_PORT"></xsd:enumeration>
		</xsd:restriction>
	</xsd:simpleType>


	<xsd:complexType name="SpreadsheetColumnNames">
		<xsd:sequence>
			<xsd:element name="entry" type="activities:SpreadsheetColumnNameEntry"
				minOccurs="0" maxOccurs="unbounded" />
		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="SpreadsheetColumnNameEntry">
		<xsd:sequence>
			<xsd:element name="string" type="xsd:string" minOccurs="2"
				maxOccurs="2" />
		</xsd:sequence>
	</xsd:complexType>



	<xsd:complexType name="SpreadsheetRange">
		<xsd:sequence>
			<xsd:element name="start" type="xsd:nonNegativeInteger" />
			<xsd:element name="end" type="xsd:nonNegativeInteger" />
			<xsd:element name="excludes" type="activities:SpreadsheetExcludes" />
		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="SpreadsheetExcludes">
		<xsd:sequence>
			<xsd:element name="exclude" type="activities:SpreadsheetRange"
				minOccurs="0" maxOccurs="unbounded" />
		</xsd:sequence>
	</xsd:complexType>


	<xsd:complexType name="LocalDependencies">

		<xsd:sequence>
			<xsd:element name="string" type="xsd:string" maxOccurs="unbounded"
				minOccurs="0">
			</xsd:element>
		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="ArtifactDependencies">
		<xsd:sequence>
			<xsd:element name="net.sf.taverna.raven.repository.BasicArtifact"
				type="activities:BasicArtifact" maxOccurs="unbounded" minOccurs="0">
			</xsd:element>
		</xsd:sequence>
	</xsd:complexType>


	<xsd:complexType name="Dependencies">
		<xsd:sequence>
			<xsd:choice>
				<xsd:element name="string" type="xsd:string" maxOccurs="unbounded"
					minOccurs="0">
				</xsd:element>
				<xsd:element name="element" type="activities:DependencyElement"
					maxOccurs="unbounded" minOccurs="0">
				</xsd:element>
			</xsd:choice>
		</xsd:sequence>
		<xsd:attribute name="class" type="xsd:string" use="optional"></xsd:attribute>
	</xsd:complexType>


	<xsd:complexType name="DependencyElement">
		<xsd:simpleContent>
			<xsd:extension base="xsd:string">
				<xsd:attribute name="class" use="optional" />
			</xsd:extension>
		</xsd:simpleContent>
	</xsd:complexType>

	<xsd:simpleType name="ClassLoaderSharing">
		<xsd:restriction base="xsd:string">
			<xsd:enumeration value="workflow" />
			<xsd:enumeration value="system" />
		</xsd:restriction>
	</xsd:simpleType>

	<xsd:complexType name="BasicArtifact">
		<xsd:sequence>
			<xsd:element name="groupId" type="xsd:string" />
			<xsd:element name="artifactId" type="xsd:string" />
			<xsd:element name="version" type="xsd:string" />
			<xsd:element name="hashCode" type="xsd:string" minOccurs="0" />
			<xsd:element name="string" type="xsd:string" minOccurs="0" />
		</xsd:sequence>
	</xsd:complexType>

	<xsd:complexType name="ActivityInputPorts">
		<xsd:sequence>
			<xsd:element
				name="net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean"
				minOccurs="0" maxOccurs="unbounded" type="activities:ActivityPortDefinitionBean">
			</xsd:element>
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="ActivityPortDefinitionBean">
	<xsd:choice minOccurs="1" maxOccurs="unbounded" id="activityPortChoice">
		<xsd:annotation>
			<xsd:documentation>
	These seem to come in any order depending on Activity type and Taverna
	version (probably some internal hash maps involved) - and instead of
	trying to model this using xsd:any, xsd:groups and xsd:choice, I just
	went for an unbounded xsd:choice. Users will have to deal with the following
	additional constaints:

	These elements are required, maximum 1 occurance: name, depth

	These can occur 0..unbounded times:
	handledReferenceSchemes, translatedElementType

	The rest are optional, but must maximally appear once.

			</xsd:documentation>
		</xsd:annotation>

		<xsd:element name="handledReferenceSchemes" type="xsd:string"/>
		<xsd:element name="translatedElementType" type="xsd:string" />
		<xsd:element name="name" type="xsd:string" />
		<xsd:element name="depth" type="xsd:nonNegativeInteger" />
		<xsd:element name="allowsLiteralValues" type="xsd:boolean" />
		<xsd:element name="mimeTypes">
			<xsd:complexType>
				<xsd:choice>
					<xsd:element name="string" type="xsd:string" minOccurs="0"
						maxOccurs="unbounded" />
					<xsd:element name="element" type="activities:DependencyElement" />
				</xsd:choice>
				<xsd:attribute name="class" type="xsd:string" use="optional" />
			</xsd:complexType>
		</xsd:element>
		<xsd:element name="granularDepth" type="xsd:nonNegativeInteger" />

	</xsd:choice>
</xsd:complexType>

	<xsd:complexType name="ActivityOutputPorts">
		<xsd:sequence>
			<xsd:element
				name="net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean"
				minOccurs="0" maxOccurs="unbounded" type="activities:ActivityPortDefinitionBean">
			</xsd:element>
		</xsd:sequence>

	</xsd:complexType>
	<xsd:complexType name="BioMobyCategory">
		<xsd:sequence>
			<xsd:any namespace="##any" processContents="lax" minOccurs="0"
				maxOccurs="unbounded" />
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="BioMobyServiceType">
		<xsd:sequence>
			<xsd:any minOccurs="0" maxOccurs="unbounded" namespace="##any"
				processContents="lax">
			</xsd:any>
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="BioMobySecondaries">
		<xsd:sequence>
			<xsd:element minOccurs="0" maxOccurs="unbounded" name="entry"
				type="activities:BioMobyEntry">
			</xsd:element>
		</xsd:sequence>
	</xsd:complexType>
	<xsd:complexType name="BioMobyEntry">
		<xsd:sequence>
			<xsd:element minOccurs="2" maxOccurs="2" name="string"
				type="xsd:anyType">
			</xsd:element>
		</xsd:sequence>
	</xsd:complexType>
</xsd:schema>