public ExternalToolActivityConfigurationBean makeConfiguration()

in taverna-external-tool-activity-ui/src/main/java/org/apache/taverna/activities/externaltool/views/ExternalToolConfigView.java [166:269]
87 lines of code
9 McCabe index (conditional complexity)

	public ExternalToolActivityConfigurationBean makeConfiguration() {
		ExternalToolActivityConfigurationBean newConfiguration = (ExternalToolActivityConfigurationBean) cloneBean(configuration);
		ExternalToolActivityHealthChecker.updateLocation(newConfiguration);
		

		if (!isFromRepository()) {
			ToolDescription ucd = newConfiguration.getToolDescription();

			ucd.setTooldescid(nameField.getText());
			if (groupField.getText().isEmpty()) {
				ucd.setGroup(null);
			} else {
				ucd.setGroup(groupField.getText());
			}
			ucd.setDescription(descriptionArea.getText());
			ucd.setCommand(scriptTextArea.getText());
			ucd.setReturnCodesAsText(returnCodesField.getText());
			ucd.setIncludeStdIn(stdInCheckBox.isSelected());
			ucd.setIncludeStdOut(stdOutCheckBox.isSelected());
			ucd.setIncludeStdErr(stdErrCheckBox.isSelected());

			ucd.getInputs().clear();
			ucd.getTags().clear();
			synchronized (fileListViewList) {
				for (ExternalToolFileViewer viewer : fileListViewList) {
					ScriptInputUser si = new ScriptInputUser();
					si.setBinary(viewer.isBinary());
					si.setList(true);
					si.setTag(viewer.getValue());
					si.setTempFile(false);
					si.setFile(true);
					ucd.getInputs().put(viewer.getName(), si);
				}
			}

			synchronized (stringReplacementViewList) {
				for (ExternalToolStringReplacementViewer viewer : stringReplacementViewList) {
					ScriptInputUser si = new ScriptInputUser();
					si.setBinary(false);
					si.setList(false);
					si.setTag(viewer.getValue());
					si.setTempFile(false);
					si.setFile(false);
					ucd.getTags().add(si.getTag());
					ucd.getInputs().put(viewer.getName(), si);
				}
			}

			synchronized (inputFileViewList) {
				for (ExternalToolFileViewer viewer : inputFileViewList) {
					ScriptInputUser si = new ScriptInputUser();
					si.setBinary(viewer.isBinary());
					si.setList(false);
					si.setTag(viewer.getValue());
					si.setTempFile(false);
					si.setFile(true);
					ucd.getInputs().put(viewer.getName(), si);
				}
			}

			synchronized (outputViewList) {
				ucd.getOutputs().clear();
				for (ExternalToolFileViewer viewer : outputViewList) {
					ScriptOutput so = new ScriptOutput();
					so.setBinary(viewer.isBinary());
					so.setPath(viewer.getValue());
					ucd.getOutputs().put(viewer.getName(), so);
				}
			}
			ucd.getStatic_inputs().clear();
			synchronized (staticStringViewList) {
				for (ExternalToolStaticStringViewer viewer : staticStringViewList) {
					ScriptInputStatic sis = new ScriptInputStatic();
					sis.setContent(viewer.getContent());
					sis.setTag(viewer.getValue());
					sis.setTempFile(false);
					sis.setFile(true);
					ucd.getStatic_inputs().add(sis);
				}
			}
			synchronized (staticUrlViewList) {
				for (ExternalToolStaticUrlViewer viewer : staticUrlViewList) {
					ScriptInputStatic sis = new ScriptInputStatic();
					sis.setUrl(viewer.getContent());
					sis.setTag(viewer.getValue());
					sis.setTempFile(false);
					sis.setFile(true);
					ucd.getStatic_inputs().add(sis);
				}
			}

/*			synchronized (runtimeEnvironmentViewList) {
				ucd.getREs().clear();
				for (ExternalToolRuntimeEnvironmentViewer viewer : runtimeEnvironmentViewList) {
					RuntimeEnvironmentConstraint newConstraint = new RuntimeEnvironmentConstraint(
							viewer.getId(), viewer.getRelation());
					ucd.getREs().add(newConstraint);
				}
			}*/
		}
		invocationPanel.fillInConfiguration(newConfiguration);

		return newConfiguration;
	}