Path	Lines of Code
taverna-activity-icons-api/src/main/java/org/apache/taverna/workbench/activityicons/ActivityIconManager.java	9
taverna-activity-icons-api/src/main/java/org/apache/taverna/workbench/activityicons/ActivityIconSPI.java	9
taverna-activity-icons-api/src/main/java/org/apache/taverna/workbench/activityicons/DefaultActivityIcon.java	25
taverna-activity-icons-api/src/main/java/org/apache/taverna/workbench/activityicons/impl/ActivityIconManagerImpl.java	47
taverna-activity-icons-api/src/main/resources/META-INF/spring/activity-icons-api-context-osgi.xml	11
taverna-activity-icons-api/src/main/resources/META-INF/spring/activity-icons-api-context.xml	9
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/AbstractConfigurableServiceProvider.java	53
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/AbstractTemplateService.java	64
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/ConfigurableServiceProvider.java	8
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/CustomizedConfigurePanelProvider.java	11
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/IdentifiedObject.java	25
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/ServiceDescription.java	51
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/ServiceDescriptionProvider.java	20
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/ServiceDescriptionRegistry.java	30
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/ServiceDescriptionsConfiguration.java	8
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/AbstractProviderEvent.java	12
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/AbstractProviderNotification.java	12
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/AddedProviderEvent.java	7
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/PartialServiceDescriptionsNotification.java	17
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/ProviderErrorNotification.java	13
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/ProviderStatusNotification.java	8
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/ProviderUpdatingNotification.java	7
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/ProviderWarningNotification.java	8
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/RemovedProviderEvent.java	7
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/ServiceDescriptionProvidedEvent.java	15
taverna-activity-palette-api/src/main/java/org/apache/taverna/servicedescriptions/events/ServiceDescriptionRegistryEvent.java	3
taverna-activity-palette-impl/src/main/java/org/apache/taverna/servicedescriptions/impl/ServiceDescriptionConstants.java	9
taverna-activity-palette-impl/src/main/java/org/apache/taverna/servicedescriptions/impl/ServiceDescriptionDeserializer.java	141
taverna-activity-palette-impl/src/main/java/org/apache/taverna/servicedescriptions/impl/ServiceDescriptionRegistryImpl.java	427
taverna-activity-palette-impl/src/main/java/org/apache/taverna/servicedescriptions/impl/ServiceDescriptionSerializer.java	82
taverna-activity-palette-impl/src/main/java/org/apache/taverna/servicedescriptions/impl/ServiceDescriptionXMLConstants.java	11
taverna-activity-palette-impl/src/main/java/org/apache/taverna/servicedescriptions/impl/ServiceDescriptionsConfigurationImpl.java	58
taverna-activity-palette-impl/src/main/java/org/apache/taverna/workbench/ui/activitypalette/ActivityPaletteConfiguration.java	34
taverna-activity-palette-impl/src/main/java/org/apache/taverna/workbench/ui/activitypalette/ActivityPaletteConfigurationPanel.java	214
taverna-activity-palette-impl/src/main/java/org/apache/taverna/workbench/ui/activitypalette/ActivityPaletteConfigurationUIFactory.java	25
taverna-activity-palette-impl/src/main/resources/META-INF/spring/activity-palette-impl-context-osgi.xml	13
taverna-activity-palette-impl/src/main/resources/META-INF/spring/activity-palette-impl-context.xml	15
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/PathElementFilterTreeNode.java	8
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/RootFilterTreeNode.java	8
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/ServiceFilter.java	103
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/ServiceFilterTreeNode.java	13
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/ServicePanel.java	324
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/ServicePanelComponentFactory.java	45
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/ServiceTreeCellRenderer.java	41
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/ServiceTreeClickListener.java	201
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/ServiceTreePanel.java	144
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/AddServiceProviderAction.java	188
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/ExportServiceDescriptionsAction.java	108
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/ImportServiceDescriptionsFromFileAction.java	100
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/ImportServiceDescriptionsFromURLAction.java	79
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/RefreshProviderRegistryAction.java	18
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/RemoveDefaultServicesAction.java	25
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/RemoveUserServicesAction.java	31
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/actions/RestoreDefaultServicesAction.java	24
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/config/ServiceDescriptionConfigPanel.java	114
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/config/ServiceDescriptionConfigUIFactory.java	28
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/menu/AddServiceProviderMenu.java	63
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/tree/Filter.java	8
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/tree/FilterTreeCellRenderer.java	31
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/tree/FilterTreeModel.java	57
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/tree/FilterTreeNode.java	98
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/tree/FilterTreeSelectionModel.java	17
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/tree/MyFilter.java	53
taverna-activity-palette-ui/src/main/java/org/apache/taverna/workbench/ui/servicepanel/tree/TreePanel.java	256
taverna-activity-palette-ui/src/main/resources/META-INF/spring/activity-palette-ui-context-osgi.xml	16
taverna-activity-palette-ui/src/main/resources/META-INF/spring/activity-palette-ui-context.xml	19
taverna-activity-tools/src/main/java/org/apache/taverna/workbench/activitytools/AbstractConfigureActivityMenuAction.java	53
taverna-beaninfo/src/main/java/org/apache/taverna/lang/beans/PropertyAnnotated.java	15
taverna-beaninfo/src/main/java/org/apache/taverna/lang/beans/PropertyAnnotation.java	18
taverna-beaninfo/src/main/java/org/apache/taverna/lang/beans/PropertyAnnotationExtractor.java	129
taverna-configuration-api/src/main/java/org/apache/taverna/workbench/configuration/colour/ColourManager.java	7
taverna-configuration-api/src/main/java/org/apache/taverna/workbench/configuration/mimetype/MimeTypeManager.java	15
taverna-configuration-api/src/main/java/org/apache/taverna/workbench/configuration/workbench/WorkbenchConfiguration.java	12
taverna-configuration-api/src/main/java/org/apache/taverna/workbench/configuration/workbench/ui/T2ConfigurationFrame.java	5
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/WorkbenchConfigurationImpl.java	147
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/WorkbenchConfigurationPanel.java	201
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/WorkbenchConfigurationUIFactory.java	24
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/colour/ColourManagerImpl.java	122
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/mimetype/MimeTypeManagerImpl.java	49
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/ui/T2ConfigurationFrameImpl.java	139
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/ui/WorkbenchConfigurationMenu.java	32
taverna-configuration-impl/src/main/java/org/apache/taverna/workbench/ui/impl/configuration/ui/WorkbenchPreferencesSection.java	12
taverna-configuration-impl/src/main/resources/META-INF/spring/configuration-impl-context-osgi.xml	20
taverna-configuration-impl/src/main/resources/META-INF/spring/configuration-impl-context.xml	29
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/actions/activity/ActivityConfigurationAction.java	127
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/actions/activity/ActivityContextualView.java	22
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/actions/activity/HTMLBasedActivityContextualView.java	47
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/AddLayerFactorySPI.java	9
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/ContextualView.java	35
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ActivityConfigurationDialog.java	403
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ActivityConfigurationPanel.java	155
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ActivityPortConfiguration.java	42
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ContextualViewFactory.java	7
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ContextualViewFactoryRegistry.java	5
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/DependencyConfigurationPanel.java	198
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ListConfigurationComponent.java	79
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ListLayout.java	56
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/MultiPageActivityConfigurationPanel.java	26
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ScriptConfigurationComponent.java	107
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ValidatingTextField.java	22
taverna-contextual-views-api/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/ValidatingTextGroup.java	79
taverna-contextual-views-api/src/main/resources/META-INF/spring/contextual-views-api-context-osgi.xml	8
taverna-contextual-views-api/src/main/resources/META-INF/spring/contextual-views-api-context.xml	5
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/activity/impl/ContextualViewFactoryRegistryImpl.java	22
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/annotated/AnnotatedContextualView.java	176
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/annotated/AnnotatedContextualViewFactory.java	34
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/condition/ConditionContextualView.java	39
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/condition/ConditionContextualViewFactory.java	19
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/dataflow/DataflowContextualView.java	86
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/dataflow/DataflowContextualViewFactory.java	28
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/dataflowinputport/DataflowInputPortContextualView.java	58
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/dataflowinputport/DataflowInputPortContextualViewFactory.java	23
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/dataflowoutputport/DataflowOutputPortContextualView.java	63
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/dataflowoutputport/DataflowOutputPortContextualViewFactory.java	24
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/datalink/DatalinkContextualView.java	62
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/datalink/DatalinkContextualViewFactory.java	24
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/impl/ContextualViewComponent.java	327
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/impl/ContextualViewComponentFactory.java	35
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/inputport/InputPortContextualView.java	40
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/inputport/InputPortContextualViewFactory.java	18
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/merge/MergeConfigurationAction.java	41
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/merge/MergeConfigurationView.java	183
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/merge/MergeContextualView.java	102
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/merge/MergeContextualViewFactory.java	33
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/outputport/OutputPortContextualView.java	40
taverna-contextual-views-impl/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/outputport/OutputPortContextualViewFactory.java	18
taverna-contextual-views-impl/src/main/resources/META-INF/spring/contextual-views-impl-context-osgi.xml	25
taverna-contextual-views-impl/src/main/resources/META-INF/spring/contextual-views-impl-context.xml	39
taverna-contextual-views/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/processor/ProcessorActivitiesContextualView.java	111
taverna-contextual-views/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/processor/ProcessorActivitiesContextualViewFactory.java	42
taverna-contextual-views/src/main/java/org/apache/taverna/workbench/ui/views/contextualviews/processor/ProcessorPredictedBehaviorContextualViewFactory.java	131
taverna-contextual-views/src/main/resources/META-INF/spring/contextual-views-context-osgi.xml	12
taverna-contextual-views/src/main/resources/META-INF/spring/contextual-views-context.xml	10
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/CMStrings.java	6
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/ChangeMasterPasswordDialog.java	157
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/ConfirmTrustedCertificateDialog.java	346
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/ConfirmTrustedCertificateUI.java	33
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/CredentialManagerUI.java	944
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/CredentialManagerUILauncher.java	49
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/CryptoFileFilter.java	30
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/GetMasterPasswordDialog.java	104
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/GetPasswordDialog.java	109
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/KeyPairsTableModel.java	100
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/NewEditPasswordEntryDialog.java	276
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/NewKeyPairEntryDialog.java	211
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/NewTrustCertsDialog.java	177
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/PasswordsTableModel.java	107
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/SetMasterPasswordDialog.java	124
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/TableCellRenderer.java	52
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/TableHeaderRenderer.java	58
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/TrustedCertsTableModel.java	102
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/ViewCertDetailsDialog.java	322
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/ViewUsernamePasswordEntryDialog.java	139
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/WarnUserAboutJCEPolicyDialog.java	153
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/action/CredentialManagerAction.java	37
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/menu/CredentialManagerMenu.java	25
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/AskUserJavaTruststorePasswordProvider.java	11
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/AskUserMasterPasswordProvider.java	16
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/AskUserServiceUsernameAndPasswordProvider.java	14
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/AskUserTrustConfirmationProvider.java	9
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/GetPasswordDialog.java	150
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/SimpleMasterPasswordProvider.java	18
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/UIMasterPasswordProvider.java	64
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/password/UIUsernamePasswordProvider.java	72
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/startup/InitialiseSSLStartupHook.java	29
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/startup/SetCredManAuthenticatorStartupHook.java	19
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/toolbar/CredentialManagerToolbarAction.java	16
taverna-credential-manager-ui/src/main/java/org/apache/taverna/workbench/ui/credentialmanager/toolbar/CredentialManagerToolbarSection.java	12
taverna-credential-manager-ui/src/main/resources/META-INF/spring/credential-manager-ui-context-osgi.xml	22
taverna-credential-manager-ui/src/main/resources/META-INF/spring/credential-manager-ui-context.xml	31
taverna-data-management-config-ui/src/main/java/org/apache/taverna/workbench/reference/config/DataManagementConfigurationPanel.java	228
taverna-data-management-config-ui/src/main/java/org/apache/taverna/workbench/reference/config/DataManagementConfigurationUIFactory.java	35
taverna-data-management-config-ui/src/main/resources/META-INF/spring/data-management-config-ui-context-osgi.xml	11
taverna-data-management-config-ui/src/main/resources/META-INF/spring/data-management-config-ui-context.xml	9
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/activities/dataflow/actions/EditNestedDataflowAction.java	33
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/activities/dataflow/menu/EditNestedDataflowMenuAction.java	20
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/activities/dataflow/servicedescriptions/DataflowActivityIcon.java	23
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/activities/dataflow/servicedescriptions/DataflowTemplateService.java	44
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/activities/dataflow/views/DataflowActivityContextualView.java	84
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/activities/dataflow/views/DataflowActivityViewFactory.java	58
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/DataflowMerger.java	58
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/MergeException.java	16
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/actions/AddNestedWorkflowAction.java	46
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/actions/ImportWorkflowAction.java	45
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/actions/MergeWorkflowAction.java	45
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/actions/OpenSourceWorkflowAction.java	82
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/actions/ReplaceNestedWorkflowAction.java	57
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/gui/ImportWorkflowWizard.java	937
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/menu/AddNestedWorkflowMenuAction.java	58
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/menu/ImportWorkflowMenuAction.java	54
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/menu/MergeWorkflowMenuAction.java	49
taverna-dataflow-activity-ui/src/main/java/org/apache/taverna/workbench/file/importworkflow/menu/ReplaceNestedWorkflowMenuAction.java	59
taverna-dataflow-activity-ui/src/main/resources/META-INF/spring/dataflow-activity-ui-context-osgi.xml	25
taverna-dataflow-activity-ui/src/main/resources/META-INF/spring/dataflow-activity-ui-context.xml	54
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/AddConditionAction.java	49
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/AddDataflowInputAction.java	60
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/AddDataflowOutputAction.java	55
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/DataflowEditAction.java	26
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/EditDataflowInputPortAction.java	77
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/EditDataflowOutputPortAction.java	57
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/RemoveConditionAction.java	35
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/RemoveDataflowInputPortAction.java	51
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/RemoveDataflowOutputPortAction.java	51
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/RemoveDatalinkAction.java	34
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/RemoveProcessorAction.java	100
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/actions/RenameProcessorAction.java	57
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/ui/DataflowInputPortPanel.java	117
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/ui/DataflowOutputPortPanel.java	49
taverna-design-ui/src/main/java/org/apache/taverna/workbench/design/ui/ProcessorPanel.java	45
taverna-disabled-activity-ui/src/main/java/org/apache/taverna/activities/disabled/actions/DisabledActivityConfigurationAction.java	85
taverna-disabled-activity-ui/src/main/java/org/apache/taverna/activities/disabled/menu/ConfigureDisabledMenuAction.java	40
taverna-disabled-activity-ui/src/main/java/org/apache/taverna/activities/disabled/views/DisabledActivityViewFactory.java	48
taverna-disabled-activity-ui/src/main/java/org/apache/taverna/activities/disabled/views/DisabledConfigView.java	103
taverna-disabled-activity-ui/src/main/java/org/apache/taverna/activities/disabled/views/DisabledContextualView.java	95
taverna-disabled-activity-ui/src/main/resources/META-INF/spring/disabled-activity-ui-context-osgi.xml	16
taverna-disabled-activity-ui/src/main/resources/META-INF/spring/disabled-activity-ui-context.xml	20
taverna-edits-api/src/main/java/org/apache/taverna/workbench/edits/CompoundEdit.java	50
taverna-edits-api/src/main/java/org/apache/taverna/workbench/edits/Edit.java	8
taverna-edits-api/src/main/java/org/apache/taverna/workbench/edits/EditException.java	13
taverna-edits-api/src/main/java/org/apache/taverna/workbench/edits/EditManager.java	50
taverna-edits-api/src/main/java/org/apache/taverna/workbench/edits/package-info.java	1
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AbstractEdit.java	56
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddActivityEdit.java	24
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddActivityInputPortMappingEdit.java	33
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddActivityOutputPortMappingEdit.java	33
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddChildEdit.java	21
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddDataLinkEdit.java	55
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddIterationStrategyEdit.java	19
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddIterationStrategyInputPortEdit.java	20
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddProcessorEdit.java	15
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddProcessorInputPortEdit.java	15
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddProcessorOutputPortEdit.java	16
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddWorkflowInputPortEdit.java	73
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/AddWorkflowOutputPortEdit.java	75
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/ChangeDepthEdit.java	70
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/ChangeGranularDepthEdit.java	19
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/ChangeJsonEdit.java	19
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/ClearIterationStrategyStackEdit.java	20
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/ConfigureEdit.java	24
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveActivityEdit.java	25
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveActivityInputPortMappingEdit.java	26
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveActivityOutputPortMappingEdit.java	26
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveChildEdit.java	18
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveDataLinkEdit.java	77
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveProcessorInputPortEdit.java	9
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveProcessorOutputPortEdit.java	9
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveWorkflowInputPortEdit.java	71
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RemoveWorkflowOutputPortEdit.java	70
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/RenameEdit.java	100
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/ReorderMergePositionsEdit.java	25
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/SetIterationStrategyStackEdit.java	21
taverna-edits-api/src/main/java/org/apache/taverna/workflow/edits/UpdateDataflowInternalIdentifierEdit.java	22
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/EditManagerImpl.java	134
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/menu/AbstractUndoAction.java	99
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/menu/RedoMenuAction.java	50
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/menu/UndoMenuAction.java	49
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/menu/UndoMenuSection.java	12
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/toolbar/EditToolbarSection.java	11
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/toolbar/RedoToolbarAction.java	19
taverna-edits-impl/src/main/java/org/apache/taverna/workbench/edits/impl/toolbar/UndoToolbarAction.java	19
taverna-edits-impl/src/main/resources/META-INF/spring/edits-impl-context-osgi.xml	16
taverna-edits-impl/src/main/resources/META-INF/spring/edits-impl-context.xml	30
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/AbstractDataflowPersistenceHandler.java	40
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/DataflowInfo.java	32
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/DataflowPersistenceHandler.java	19
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/FileManager.java	55
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/FileType.java	26
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/events/AbstractDataflowEvent.java	11
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/events/ClosedDataflowEvent.java	7
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/events/ClosingDataflowEvent.java	14
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/events/FileManagerEvent.java	5
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/events/OpenedDataflowEvent.java	7
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/events/SavedDataflowEvent.java	7
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/events/SetCurrentDataflowEvent.java	7
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/exceptions/FileException.java	16
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/exceptions/OpenException.java	15
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/exceptions/OverwriteException.java	12
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/exceptions/SaveException.java	15
taverna-file-api/src/main/java/org/apache/taverna/workbench/file/exceptions/UnsavedException.java	13
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/DataflowFromDataflowPersistenceHandler.java	36
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/DataflowPersistenceHandlerRegistry.java	177
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/FileDataflowInfo.java	31
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/FileManagerImpl.java	455
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/FileTypeFileFilter.java	26
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/MultipleFileTypes.java	30
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/OpenDataflowInProgressDialog.java	33
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/OpenDataflowInfo.java	53
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/OpenDataflowRunnable.java	51
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/OpenDataflowSwingWorker.java	38
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/T2DataflowOpener.java	110
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/T2FileFilter.java	13
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/T2FlowFileType.java	17
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/WorkflowBundleFileFilter.java	13
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/WorkflowBundleFileType.java	17
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/WorkflowBundleOpener.java	110
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/WorkflowBundleSaver.java	108
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/CloseAllWorkflowsAction.java	52
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/CloseWorkflowAction.java	76
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/NewWorkflowAction.java	30
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/OpenNestedWorkflowAction.java	38
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/OpenWorkflowAction.java	227
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/OpenWorkflowFromURLAction.java	92
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/PasswordInput.java	143
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/SaveAllWorkflowsAction.java	68
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/SaveWorkflowAction.java	138
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/actions/SaveWorkflowAsAction.java	179
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/hooks/CloseWorkflowsOnShutdown.java	21
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileCloseAllMenuAction.java	24
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileCloseMenuAction.java	23
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileNewMenuAction.java	20
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileOpenFromURLMenuAction.java	20
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileOpenMenuAction.java	20
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileOpenMenuSection.java	12
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileOpenRecentMenuAction.java	335
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileSaveAllMenuAction.java	21
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileSaveAsMenuAction.java	17
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileSaveMenuAction.java	20
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/FileSaveMenuSection.java	12
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/menu/WorkflowsMenu.java	118
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/toolbar/CloseToolbarAction.java	23
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/toolbar/FileToolbarMenuSection.java	11
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/toolbar/NewToolbarAction.java	20
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/toolbar/OpenToolbarAction.java	20
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/toolbar/OpenWorkflowFromURLToolbarAction.java	20
taverna-file-impl/src/main/java/org/apache/taverna/workbench/file/impl/toolbar/SaveToolbarAction.java	23
taverna-file-impl/src/main/resources/META-INF/spring/file-impl-context-osgi.xml	93
taverna-file-impl/src/main/resources/META-INF/spring/file-impl-context.xml	115
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/DefaultGraphEventManager.java	212
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/DotWriter.java	178
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/Graph.java	54
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/GraphColorManager.java	30
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/GraphController.java	1030
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/GraphEdge.java	44
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/GraphElement.java	165
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/GraphEventManager.java	21
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/GraphNode.java	52
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/GraphShapeElement.java	39
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/dot/GraphLayout.java	262
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGGraph.java	370
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGGraphController.java	461
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGGraphEdge.java	244
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGGraphElementDelegate.java	138
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGGraphNode.java	521
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGGraphSettings.java	7
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGMonitorShape.java	6
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGShape.java	4
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/SVGUtil.java	232
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/event/SVGEventListener.java	25
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/event/SVGMouseClickEventListener.java	16
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/event/SVGMouseDownEventListener.java	16
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/event/SVGMouseMovedEventListener.java	17
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/event/SVGMouseOutEventListener.java	17
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/event/SVGMouseOverEventListener.java	17
taverna-graph-model/src/main/java/org/apache/taverna/workbench/models/graph/svg/event/SVGMouseUpEventListener.java	17
taverna-graph-model/src/main/jjtree/NamedNode.java	22
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/AutoScrollInteractor.java	125
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/GraphViewComponent.java	435
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/GraphViewComponentFactory.java	62
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/actions/AddWFInputAction.java	36
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/actions/AddWFOutputAction.java	36
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/actions/DeleteGraphComponentAction.java	123
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/actions/RenameWFInputOutputProcessorAction.java	125
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/config/GraphViewConfiguration.java	44
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/config/GraphViewConfigurationPanel.java	255
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/config/GraphViewConfigurationUIFactory.java	23
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/AddWFInputMenuAction.java	27
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/AddWFOutputMenuAction.java	27
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/DeleteGraphComponentMenuAction.java	27
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/DiagramMenu.java	18
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/DiagramSaveMenuSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/DiagramZoomMenuSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/GraphCopyMenuSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/GraphDeleteMenuSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/GraphDetailsMenuSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/GraphEditMenuSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/GraphMenuSection.java	12
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/InsertMenu.java	18
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/RenameWFInputOutputProcessorMenuAction.java	29
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/ResetDiagramAction.java	32
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/ResetDiagramMenuAction.java	16
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/SaveGraphImageSubMenu.java	217
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/ZoomInAction.java	36
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/ZoomInMenuAction.java	16
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/ZoomOutAction.java	33
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/menu/ZoomOutMenuAction.java	16
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/toolbar/AddWFInputToolbarAction.java	27
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/toolbar/AddWFOutputToolbarAction.java	27
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/toolbar/DeleteGraphComponentToolbarAction.java	27
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/toolbar/GraphDeleteToolbarSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/toolbar/GraphEditToolbarSection.java	11
taverna-graph-view/src/main/java/org/apache/taverna/workbench/views/graph/toolbar/RenameWFInputOutputProcessorToolbarAction.java	30
taverna-graph-view/src/main/resources/META-INF/spring/graph-view-context-osgi.xml	40
taverna-graph-view/src/main/resources/META-INF/spring/graph-view-context.xml	95
taverna-helper-api/src/main/java/org/apache/taverna/workbench/helper/HelpCollator.java	191
taverna-helper-api/src/main/java/org/apache/taverna/workbench/helper/HelpEnabledDialog.java	44
taverna-helper-api/src/main/java/org/apache/taverna/workbench/helper/Helper.java	101
taverna-helper-api/src/main/java/org/apache/taverna/workbench/helper/NonBlockedHelpEnabledDialog.java	27
taverna-httpproxy-config/src/main/java/org/apache/taverna/workbench/httpproxy/config/HttpProxyConfigurationPanel.java	385
taverna-httpproxy-config/src/main/java/org/apache/taverna/workbench/httpproxy/config/HttpProxyConfigurationUIFactory.java	23
taverna-httpproxy-config/src/main/resources/META-INF/spring/httpproxy-config-context-osgi.xml	10
taverna-httpproxy-config/src/main/resources/META-INF/spring/httpproxy-config-context.xml	8
taverna-io/src/main/java/org/apache/taverna/lang/io/StreamCopier.java	28
taverna-io/src/main/java/org/apache/taverna/lang/io/StreamDevourer.java	50
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/IterationStrategyIcons.java	22
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/contextview/IterationStrategyConfigurationDialog.java	112
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/contextview/IterationStrategyContextualView.java	124
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/contextview/IterationStrategyContextualViewFactory.java	25
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/editor/IterationStrategyCellRenderer.java	44
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/editor/IterationStrategyEditor.java	177
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/editor/IterationStrategyEditorControl.java	319
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/editor/IterationStrategyTree.java	69
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/editor/IterationStrategyTreeModel.java	60
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/editor/IterationStrategyTreeNode.java	66
taverna-iteration-strategy-ui/src/main/java/org/apache/taverna/workbench/iterationstrategy/menu/IterationStrategyConfigureMenuAction.java	33
taverna-iteration-strategy-ui/src/main/resources/META-INF/spring/iteration-strategy-ui-context-osgi.xml	11
taverna-iteration-strategy-ui/src/main/resources/META-INF/spring/iteration-strategy-ui-context.xml	9
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/ActivityGenerator.java	105
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/AddLoopFactory.java	78
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/LoopAddMenuAction.java	35
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/LoopConfigurationPanel.java	443
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/LoopConfigureAction.java	224
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/LoopConfigureMenuAction.java	59
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/LoopContextualView.java	117
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/LoopContextualViewFactory.java	24
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/LoopRemoveMenuAction.java	53
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/comparisons/Comparison.java	11
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/comparisons/EqualTo.java	15
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/comparisons/IsGreaterThan.java	15
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/comparisons/IsLessThan.java	15
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/comparisons/Matches.java	15
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/comparisons/NotEqualTo.java	15
taverna-loop-ui/src/main/java/org/apache/taverna/workbench/loop/comparisons/NotMatches.java	15
taverna-loop-ui/src/main/resources/META-INF/spring/loop-ui-context-osgi.xml	17
taverna-loop-ui/src/main/resources/META-INF/spring/loop-ui-context.xml	28
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractContextualMenuAction.java	24
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractMenu.java	17
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractMenuAction.java	22
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractMenuCustom.java	22
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractMenuItem.java	60
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractMenuOptionGroup.java	8
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractMenuSection.java	21
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractMenuToggle.java	22
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/AbstractToolBar.java	7
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/ContextualMenuComponent.java	5
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/ContextualSelection.java	24
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/DefaultContextualMenu.java	9
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/DefaultMenuBar.java	9
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/DefaultToolBar.java	9
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/DesignOnlyAction.java	3
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/DesignOrResultsAction.java	3
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/MenuComponent.java	43
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/MenuManager.java	37
taverna-menu-api/src/main/java/org/apache/taverna/ui/menu/package-info.java	1
taverna-menu-api/src/main/resources/META-INF/spring/menu-api-context-osgi.xml	11
taverna-menu-api/src/main/resources/META-INF/spring/menu-api-context.xml	8
taverna-menu-impl/src/main/java/org/apache/taverna/ui/menu/impl/MenuManagerImpl.java	568
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/AdvancedMenu.java	18
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/EditMenu.java	18
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/FeedbackMenuAction.java	38
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/FileMenu.java	18
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/HelpMenu.java	18
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/OnlineHelpMenuAction.java	30
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/ShowLogsAndDataMenuAction.java	70
taverna-menu-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/ViewShowMenuSection.java	12
taverna-menu-impl/src/main/resources/META-INF/spring/menu-impl-context-osgi.xml	21
taverna-menu-impl/src/main/resources/META-INF/spring/menu-impl-context.xml	22
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/AbstractConnectPortMenuActions.java	227
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/ActivityInputPortSection.java	36
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/ActivityOutputPortSection.java	36
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/AddInputPortDefaultValueAction.java	95
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/ConnectInputPortMenuActions.java	16
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/ConnectOutputPortMenuActions.java	14
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/ConnectPortsAction.java	40
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/CreateAndConnectDataflowPortAction.java	157
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/SetConstantInputPortValueMenuAction.java	41
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/activityport/SetDefaultInputPortValueAction.java	107
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/annotated/AnnotatedConfigureMenuAction.java	46
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/ConfigureRunningContextualMenuSection.java	22
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/ConfigureSection.java	25
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/EditSection.java	34
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/InsertSection.java	33
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/PasteMenuAction.java	40
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/ShowConfigureMenuAction.java	119
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/ShowDetailsContextualMenuAction.java	32
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/ShowDetailsMenuAction.java	44
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/contextualviews/ShowReportsContextualMenuAction.java	63
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/controllink/ConditionSection.java	38
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/controllink/RemoveConditionMenuAction.java	36
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/datalink/LinkSection.java	41
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/datalink/RemoveLinkMenuAction.java	35
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/ConnectDataflowInputPortMenuActions.java	17
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/ConnectDataflowOutputPortMenuActions.java	17
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/EditDataflowInputPortMenuAction.java	37
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/EditDataflowOutputPortMenuAction.java	37
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/RemoveDataflowInputPortMenuAction.java	37
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/RemoveDataflowOutputPortMenuAction.java	37
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/WorkflowInputPortSection.java	41
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/ports/WorkflowOutputPortSection.java	41
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/processor/ConditionMenuActions.java	81
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/processor/ProcessorSection.java	28
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/processor/RemoveProcessorMenuAction.java	36
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/processor/RenameProcessorMenuAction.java	37
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/workflow/CreateInputMenuAction.java	32
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/workflow/CreateOutputMenuAction.java	32
taverna-menu-items/src/main/java/org/apache/taverna/ui/menu/items/workflow/WorkflowServiceTemplatesSection.java	36
taverna-menu-items/src/main/resources/META-INF/spring/menu-items-context-osgi.xml	53
taverna-menu-items/src/main/resources/META-INF/spring/menu-items-context.xml	122
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/MonitorViewComponent.java	99
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/graph/GraphMonitor.java	90
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/graph/GraphMonitorNode.java	74
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/graph/MonitorGraphComponent.java	244
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/progressreport/TableMonitorComponent.java	65
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/progressreport/WorkflowRunProgressTreeCellRenderer.java	54
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/progressreport/WorkflowRunProgressTreeTable.java	93
taverna-monitor-view/src/main/java/org/apache/taverna/workbench/views/monitor/progressreport/WorkflowRunProgressTreeTableModel.java	221
taverna-monitor-view/src/main/resources/META-INF/spring/monitor-view-context-osgi.xml	8
taverna-monitor-view/src/main/resources/META-INF/spring/monitor-view-context.xml	5
taverna-parallelize-ui/src/main/java/org/apache/taverna/workbench/parallelize/ParallelizeConfigurationPanel.java	84
taverna-parallelize-ui/src/main/java/org/apache/taverna/workbench/parallelize/ParallelizeConfigureAction.java	143
taverna-parallelize-ui/src/main/java/org/apache/taverna/workbench/parallelize/ParallelizeConfigureMenuAction.java	42
taverna-parallelize-ui/src/main/java/org/apache/taverna/workbench/parallelize/ParallelizeContextualView.java	80
taverna-parallelize-ui/src/main/java/org/apache/taverna/workbench/parallelize/ParallelizeContextualViewFactory.java	26
taverna-parallelize-ui/src/main/resources/META-INF/spring/parallelize-ui-context-osgi.xml	12
taverna-parallelize-ui/src/main/resources/META-INF/spring/parallelize-ui-context.xml	13
taverna-perspective-design/src/main/java/org/apache/taverna/ui/perspectives/design/DesignPerspective.java	80
taverna-perspective-design/src/main/java/org/apache/taverna/ui/perspectives/design/DesignPerspectiveComponent.java	75
taverna-perspective-design/src/main/java/org/apache/taverna/ui/perspectives/design/WorkflowBundleSelectorComponent.java	77
taverna-perspective-design/src/main/java/org/apache/taverna/ui/perspectives/design/WorkflowSelectorComponent.java	124
taverna-perspective-design/src/main/java/org/apache/taverna/ui/perspectives/design/WorkflowTab.java	96
taverna-perspective-design/src/main/resources/META-INF/spring/perspective-design-context-osgi.xml	17
taverna-perspective-design/src/main/resources/META-INF/spring/perspective-design-context.xml	15
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/AddCommentDialog.java	212
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/AddRemoveFavouriteDialog.java	173
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/ExampleWorkflowsPanel.java	94
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/HistoryBrowserTabContentPanel.java	384
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/JClickableLabel.java	60
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/MainComponent.java	440
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/MainComponentFactory.java	51
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/MyExperimentPerspective.java	127
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/MyStuffContributionsPanel.java	259
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/MyStuffSidebarPanel.java	226
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/MyStuffTabContentPanel.java	210
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/PluginPreferencesDialog.java	246
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/PluginStatusBar.java	90
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/ResourceListPanel.java	118
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/ResourcePreviewBrowser.java	434
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/ResourcePreviewContent.java	40
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/ResourcePreviewFactory.java	938
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/SearchOptionsPanel.java	224
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/SearchResultsPanel.java	121
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/SearchTabContentPanel.java	302
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/StyledHTMLEditorKit.java	13
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/TagBrowserTabContentPanel.java	142
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/TagCloudPanel.java	230
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/UploadWorkflowDialog.java	599
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Base64.java	903
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Comment.java	77
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/File.java	135
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Group.java	125
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/License.java	44
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/MyExperimentClient.java	753
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/MyExperimentClientShutdownHook.java	31
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Pack.java	132
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/PackItem.java	110
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Resource.java	482
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/SearchEngine.java	194
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/ServerResponse.java	26
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Tag.java	69
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/TagCloud.java	24
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/User.java	206
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Util.java	334
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/ui/perspectives/myexperiment/model/Workflow.java	279
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/workbench/myexperiment/config/MyExperimentConfiguration.java	30
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/workbench/myexperiment/config/MyExperimentConfigurationPanel.java	205
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/workbench/myexperiment/config/MyExperimentConfigurationUIFactory.java	22
taverna-perspective-myexperiment/src/main/java/org/apache/taverna/workbench/myexperiment/config/TestJFrameForPreferencesLocalLaunch.java	14
taverna-perspective-myexperiment/src/main/resources/META-INF/spring/perspective-myexperiment-context-osgi.xml	25
taverna-perspective-myexperiment/src/main/resources/META-INF/spring/perspective-myexperiment-context.xml	25
taverna-perspective-myexperiment/src/main/resources/org/apache/taverna/ui/perspectives/myexperiment/myexperiment-perspective.xml	18
taverna-perspective-myexperiment/src/main/resources/org/apache/taverna/ui/perspectives/myexperiment/styles.css	318
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/ResultsPerspective.java	100
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/ResultsPerspectiveComponent.java	173
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/RunMonitor.java	120
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/RunSelectorComponent.java	41
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/RunTab.java	96
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/WorkflowRun.java	24
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/WorkflowRunListCellRenderer.java	29
taverna-perspective-results/src/main/java/org/apache/taverna/ui/perspectives/results/WorkflowRunListModel.java	28
taverna-perspective-results/src/main/resources/META-INF/spring/perspective-results-context-osgi.xml	23
taverna-perspective-results/src/main/resources/META-INF/spring/perspective-results-context.xml	17
taverna-plugin-manager/src/main/java/org/apache/taverna/workbench/plugin/impl/AvailablePluginPanel.java	41
taverna-plugin-manager/src/main/java/org/apache/taverna/workbench/plugin/impl/InstalledPluginPanel.java	35
taverna-plugin-manager/src/main/java/org/apache/taverna/workbench/plugin/impl/PluginManagerPanel.java	161
taverna-plugin-manager/src/main/java/org/apache/taverna/workbench/plugin/impl/PluginManagerView.java	38
taverna-plugin-manager/src/main/java/org/apache/taverna/workbench/plugin/impl/PluginPanel.java	119
taverna-plugin-manager/src/main/java/org/apache/taverna/workbench/plugin/impl/UpdatePluginPanel.java	41
taverna-plugin-manager/src/main/java/org/apache/taverna/workbench/plugin/impl/menu/PluginMenuAction.java	28
taverna-plugin-manager/src/main/resources/META-INF/spring/plugin-manager-context-osgi.xml	16
taverna-plugin-manager/src/main/resources/META-INF/spring/plugin-manager-context.xml	13
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/AddPluginSiteFrame.java	169
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/CheckForNoticeStartupHook.java	103
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/CheckForUpdatesDialog.java	79
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/CheckForUpdatesStartupHook.java	76
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/PluginListCellRenderer.java	126
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/PluginListModel.java	32
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/PluginManagerFrame.java	325
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/PluginRepositoryListener.java	77
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/PluginSiteFrame.java	368
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/plugins/ui/UpdatesAvailableIcon.java	108
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/profile/ui/ProfileVersionCellRenderer.java	109
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/profile/ui/ProfileVersionListFrame.java	176
taverna-plugins-gui/src/main/java/org/apache/taverna/raven/profile/ui/ProfileVersionListModel.java	35
taverna-plugins-gui/src/main/resources/META-INF/spring/plugins-gui-context-osgi.xml	19
taverna-plugins-gui/src/main/resources/META-INF/spring/plugins-gui-context.xml	14
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/CheckWorkflowStatus.java	82
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/CopyWorkflowInProgressDialog.java	50
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/CopyWorkflowSwingWorker.java	20
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/InvalidDataflowReport.java	87
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/RegistrationPanel.java	551
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/UrlPanel.java	45
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/WorkflowLaunchWindow.java	429
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/package.html	4
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/referenceactions/ReferenceActionSPI.java	8
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/PreRegistrationTree.java	134
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/PreRegistrationTreeCellRenderer.java	75
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/PreRegistrationTreeDnDHandler.java	165
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/PreRegistrationTreeModel.java	147
taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/package.html	6
taverna-reference-ui/src/main/resources/META-INF/spring/reference-ui-context-osgi.xml	10
taverna-reference-ui/src/main/resources/META-INF/spring/reference-ui-context.xml	7
taverna-renderers-api/src/main/java/org/apache/taverna/renderers/MediaTypeDetector.java	31
taverna-renderers-api/src/main/java/org/apache/taverna/renderers/Renderer.java	8
taverna-renderers-api/src/main/java/org/apache/taverna/renderers/RendererException.java	15
taverna-renderers-api/src/main/java/org/apache/taverna/renderers/RendererRegistry.java	7
taverna-renderers-api/src/main/java/org/apache/taverna/renderers/RendererUtils.java	59
taverna-renderers-exts/src/main/java/org/apache/taverna/renderers/HTMLBrowserRenderer.java	57
taverna-renderers-exts/src/main/java/org/apache/taverna/renderers/PDFRenderer.java	72
taverna-renderers-exts/src/main/java/org/apache/taverna/renderers/SVGRenderer.java	105
taverna-renderers-exts/src/main/resources/META-INF/spring/renderers-exts-context-osgi.xml	11
taverna-renderers-exts/src/main/resources/META-INF/spring/renderers-exts-context.xml	8
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/AbstractRenderer.java	65
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/AdvancedImageRenderer.java	54
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/ExtensionFileFilter.java	39
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/HexBinaryRenderer.java	34
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/MediaTypeDetectorImpl.java	62
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/RendererConstants.java	12
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/RendererRegistryImpl.java	28
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/TextRenderer.java	92
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/TextRtfRenderer.java	47
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/TextXMLRenderer.java	47
taverna-renderers-impl/src/main/java/org/apache/taverna/renderers/impl/XMLTree.java	237
taverna-renderers-impl/src/main/resources/META-INF/spring/renderers-impl-context-osgi.xml	14
taverna-renderers-impl/src/main/resources/META-INF/spring/renderers-impl-context.xml	12
taverna-report-api/src/main/java/org/apache/taverna/workbench/report/ProfileReportEvent.java	11
taverna-report-api/src/main/java/org/apache/taverna/workbench/report/ReportManager.java	25
taverna-report-api/src/main/java/org/apache/taverna/workbench/report/ReportManagerEvent.java	3
taverna-report-api/src/main/java/org/apache/taverna/workbench/report/config/ReportManagerConfiguration.java	18
taverna-report-api/src/main/resources/META-INF/spring/report-api-context-osgi.xml	8
taverna-report-api/src/main/resources/META-INF/spring/report-api-context.xml	5
taverna-report-explainer/src/main/java/org/apache/taverna/workbench/report/explainer/BasicExplainer.java	1171
taverna-report-explainer/src/main/resources/META-INF/spring/report-explainer-context-osgi.xml	15
taverna-report-explainer/src/main/resources/META-INF/spring/report-explainer-context.xml	13
taverna-report-impl/src/main/java/org/apache/taverna/workbench/report/config/impl/ReportManagerConfigurationImpl.java	48
taverna-report-impl/src/main/java/org/apache/taverna/workbench/report/impl/ReportManagerImpl.java	408
taverna-report-impl/src/main/resources/META-INF/spring/report-impl-context-osgi.xml	14
taverna-report-impl/src/main/resources/META-INF/spring/report-impl-context.xml	14
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/config/ui/ReportManagerConfigurationPanel.java	282
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/config/ui/ReportManagerConfigurationUIFactory.java	20
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ReportOnObjectContextualMenuAction.java	137
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ReportOnWorkflowAction.java	132
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ReportViewComponent.java	446
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ReportViewComponentFactory.java	52
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ReportViewConfigureAction.java	27
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ReportViewTableModel.java	253
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/StatusRenderer.java	32
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ValidateInProgressDialog.java	33
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ValidateObjectInProgressDialog.java	34
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ValidateObjectSwingWorker.java	40
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/ValidateSwingWorker.java	91
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/VisitReportProxy.java	35
taverna-report-view/src/main/java/org/apache/taverna/workbench/report/view/VisitReportProxySet.java	22
taverna-report-view/src/main/resources/META-INF/spring/report-view-context-osgi.xml	19
taverna-report-view/src/main/resources/META-INF/spring/report-view-context.xml	23
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/InvocationTreeModel.java	61
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/InvocationTreeNode.java	86
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/InvocationView.java	84
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/ReportView.java	361
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/ResultsComponent.java	181
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/SimpleFilteredTreeModel.java	59
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/processor/FilteredIterationTreeModel.java	82
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/processor/FilteredProcessorValueTreeModel.java	61
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/processor/IntermediateValuesInProgressDialog.java	52
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/processor/IterationTreeNode.java	80
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/processor/ProcessorResultCellRenderer.java	60
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/processor/ProcessorResultTreeNode.java	89
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/processor/ProcessorResultsTreeModel.java	37
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsAsExcel.java	186
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsSPI.java	112
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveAllResultsToFileSystem.java	49
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveIndividualResult.java	108
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/saveactions/SaveIndividualResultSPI.java	7
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/DataBundleTreeModel.java	91
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/FilteredDataBundleTreeModel.java	111
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/FilteredWorkflowResultTreeModel.java	111
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/PortResultCellRenderer.java	88
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/PortResultsViewTab.java	214
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/RenderedResultComponent.java	377
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/WorkflowResultTreeModel.java	145
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/WorkflowResultTreeNode.java	83
taverna-results-view/src/main/java/org/apache/taverna/workbench/views/results/workflow/WorkflowResultsComponent.java	289
taverna-results-view/src/main/resources/META-INF/spring/results-view-context-osgi.xml	11
taverna-results-view/src/main/resources/META-INF/spring/results-view-context.xml	8
taverna-retry-ui/src/main/java/org/apache/taverna/workbench/retry/RetryConfigurationPanel.java	146
taverna-retry-ui/src/main/java/org/apache/taverna/workbench/retry/RetryConfigureAction.java	140
taverna-retry-ui/src/main/java/org/apache/taverna/workbench/retry/RetryConfigureMenuAction.java	42
taverna-retry-ui/src/main/java/org/apache/taverna/workbench/retry/RetryContextualView.java	112
taverna-retry-ui/src/main/java/org/apache/taverna/workbench/retry/RetryContextualViewFactory.java	27
taverna-retry-ui/src/main/resources/META-INF/spring/retry-ui-context-osgi.xml	12
taverna-retry-ui/src/main/resources/META-INF/spring/retry-ui-context.xml	13
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/actions/OpenWorkflowRunAction.java	88
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/actions/RunWorkflowAction.java	203
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/actions/ValidateWorkflowAction.java	26
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/cleanup/WorkflowRunStatusShutdownDialog.java	105
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/cleanup/WorkflowRunStatusShutdownHook.java	78
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/menu/FileOpenRunMenuAction.java	31
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/menu/FileRunMenuAction.java	48
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/menu/FileRunMenuSection.java	12
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/menu/FileValidateMenuAction.java	38
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/toolbar/RunToolbarAction.java	48
taverna-run-ui/src/main/java/org/apache/taverna/workbench/run/toolbar/RunToolbarSection.java	11
taverna-run-ui/src/main/resources/META-INF/spring/run-ui-context-osgi.xml	23
taverna-run-ui/src/main/resources/META-INF/spring/run-ui-context.xml	37
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/DataflowSelectionModel.java	13
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/SelectionManager.java	22
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/events/DataflowSelectionMessage.java	19
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/events/PerspectiveSelectionEvent.java	18
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/events/ProfileSelectionEvent.java	17
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/events/SelectionManagerEvent.java	5
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/events/WorkflowBundleSelectionEvent.java	18
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/events/WorkflowRunSelectionEvent.java	16
taverna-selection-api/src/main/java/org/apache/taverna/workbench/selection/events/WorkflowSelectionEvent.java	17
taverna-selection-impl/src/main/java/org/apache/taverna/workbench/selection/impl/DataflowSelectionModelImpl.java	75
taverna-selection-impl/src/main/java/org/apache/taverna/workbench/selection/impl/SelectionManagerImpl.java	307
taverna-selection-impl/src/main/resources/META-INF/spring/selection-impl-context-osgi.xml	12
taverna-selection-impl/src/main/resources/META-INF/spring/selection-impl-context.xml	10
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/actions/StringConstantActivityConfigurationAction.java	44
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/menu/AddStringConstantTemplateAction.java	70
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/menu/AddStringConstantTemplateMenuAction.java	80
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/menu/ConfigureStringConstantMenuAction.java	51
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/servicedescriptions/StringConstantActivityIcon.java	28
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/servicedescriptions/StringConstantTemplateService.java	51
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/views/StringConstantActivityContextualView.java	61
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/views/StringConstantActivityViewFactory.java	54
taverna-stringconstant-activity-ui/src/main/java/org/apache/taverna/activities/stringconstant/views/StringConstantConfigView.java	188
taverna-stringconstant-activity-ui/src/main/resources/META-INF/spring/stringconstant-activity-ui-context-osgi.xml	22
taverna-stringconstant-activity-ui/src/main/resources/META-INF/spring/stringconstant-activity-ui-context.xml	45
taverna-ui/src/main/java/org/apache/taverna/lang/ui/CArrowImage.java	139
taverna-ui/src/main/java/org/apache/taverna/lang/ui/CTransferableTreePath.java	27
taverna-ui/src/main/java/org/apache/taverna/lang/ui/DeselectingButton.java	30
taverna-ui/src/main/java/org/apache/taverna/lang/ui/DialogTextArea.java	36
taverna-ui/src/main/java/org/apache/taverna/lang/ui/EdgeLineBorder.java	57
taverna-ui/src/main/java/org/apache/taverna/lang/ui/EditorKeySetUtil.java	25
taverna-ui/src/main/java/org/apache/taverna/lang/ui/ExtensionFileFilter.java	64
taverna-ui/src/main/java/org/apache/taverna/lang/ui/FileTools.java	89
taverna-ui/src/main/java/org/apache/taverna/lang/ui/HtmlUtils.java	63
taverna-ui/src/main/java/org/apache/taverna/lang/ui/JSplitPaneExt.java	37
taverna-ui/src/main/java/org/apache/taverna/lang/ui/KeywordDocument.java	309
taverna-ui/src/main/java/org/apache/taverna/lang/ui/LineEnabledTextPanel.java	74
taverna-ui/src/main/java/org/apache/taverna/lang/ui/LinePainter.java	95
taverna-ui/src/main/java/org/apache/taverna/lang/ui/LineWrappingTextArea.java	117
taverna-ui/src/main/java/org/apache/taverna/lang/ui/NoWrapEditorKit.java	61
taverna-ui/src/main/java/org/apache/taverna/lang/ui/ReadOnlyTextArea.java	34
taverna-ui/src/main/java/org/apache/taverna/lang/ui/SanitisingDocumentFilter.java	42
taverna-ui/src/main/java/org/apache/taverna/lang/ui/ShadedLabel.java	66
taverna-ui/src/main/java/org/apache/taverna/lang/ui/ValidatingUserInputDialog.java	166
taverna-ui/src/main/java/org/apache/taverna/lang/ui/icons/Icons.java	19
taverna-ui/src/main/java/org/apache/taverna/lang/ui/tabselector/ScrollController.java	48
taverna-ui/src/main/java/org/apache/taverna/lang/ui/tabselector/Tab.java	142
taverna-ui/src/main/java/org/apache/taverna/lang/ui/tabselector/TabLayout.java	91
taverna-ui/src/main/java/org/apache/taverna/lang/ui/tabselector/TabSelectorComponent.java	61
taverna-ui/src/main/java/org/apache/taverna/lang/ui/treetable/AbstractCellEditor.java	36
taverna-ui/src/main/java/org/apache/taverna/lang/ui/treetable/AbstractTreeTableModel.java	94
taverna-ui/src/main/java/org/apache/taverna/lang/ui/treetable/JTreeTable.java	374
taverna-ui/src/main/java/org/apache/taverna/lang/ui/treetable/LinesBorder.java	141
taverna-ui/src/main/java/org/apache/taverna/lang/ui/treetable/TreeTableModel.java	11
taverna-ui/src/main/java/org/apache/taverna/lang/ui/treetable/TreeTableModelAdapter.java	78
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/AbstractListComponent.java	333
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/AlignableComponent.java	5
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/Alignment.java	46
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/BeanCheckBox.java	40
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/BeanComponent.java	241
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/BeanEnumComboBox.java	67
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/BeanTextArea.java	62
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/BeanTextComponent.java	130
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/BeanTextField.java	44
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/Icons.java	26
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/ListHandler.java	35
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/RecursiveListComponent.java	77
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/UIBuilder.java	175
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/UIConstructionException.java	15
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/WrappedListComponent.java	88
taverna-uibuilder/src/main/java/org/apache/taverna/lang/uibuilder/package.html	4
taverna-unrecognized-activity-ui/src/main/java/org/apache/taverna/activities/unrecognized/views/UnrecognizedActivityViewFactory.java	22
taverna-unrecognized-activity-ui/src/main/java/org/apache/taverna/activities/unrecognized/views/UnrecognizedContextualView.java	35
taverna-unrecognized-activity-ui/src/main/resources/META-INF/spring/unrecognized-activity-ui-context-osgi.xml	10
taverna-unrecognized-activity-ui/src/main/resources/META-INF/spring/unrecognized-activity-ui-context.xml	8
taverna-update-manager/src/main/java/org/apache/taverna/workbench/update/impl/UpdateManagerView.java	15
taverna-update-manager/src/main/java/org/apache/taverna/workbench/update/impl/menu/UpdateMenuAction.java	58
taverna-update-manager/src/main/java/org/apache/taverna/workbench/updatemanager/PluginMenuAction.java	35
taverna-update-manager/src/main/java/org/apache/taverna/workbench/updatemanager/UpdatesAvailableMenuAction.java	13
taverna-update-manager/src/main/java/org/apache/taverna/workbench/updatemanager/UpdatesToolbarSection.java	11
taverna-update-manager/src/main/resources/META-INF/spring/update-manager-context-osgi.xml	10
taverna-update-manager/src/main/resources/META-INF/spring/update-manager-context.xml	10
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/MainWindow.java	11
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ModelMapConstants.java	5
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ShutdownSPI.java	11
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/StartupSPI.java	12
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/icons/WorkbenchIcons.java	179
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ui/SwingWorkerCompletionWaiter.java	18
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ui/Updatable.java	4
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ui/Utils.java	15
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ui/Workbench.java	7
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ui/zaria/PerspectiveSPI.java	17
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ui/zaria/UIComponentFactorySPI.java	7
taverna-workbench-api/src/main/java/org/apache/taverna/workbench/ui/zaria/UIComponentSPI.java	8
taverna-workbench-impl/src/main/java/org/apache/taverna/workbench/ui/impl/DataflowEditsListener.java	56
taverna-workbench-impl/src/main/java/org/apache/taverna/workbench/ui/impl/LoggerStream.java	73
taverna-workbench-impl/src/main/java/org/apache/taverna/workbench/ui/impl/SetConsoleLoggerStartup.java	45
taverna-workbench-impl/src/main/java/org/apache/taverna/workbench/ui/impl/StoreWindowStateOnShutdown.java	25
taverna-workbench-impl/src/main/java/org/apache/taverna/workbench/ui/impl/WorkbenchImpl.java	390
taverna-workbench-impl/src/main/java/org/apache/taverna/workbench/ui/impl/WorkbenchPerspectives.java	170
taverna-workbench-impl/src/main/java/org/apache/taverna/workbench/ui/impl/menu/ExitAction.java	33
taverna-workbench-impl/src/main/resources/META-INF/spring/workbench-impl-context-osgi.xml	28
taverna-workbench-impl/src/main/resources/META-INF/spring/workbench-impl-context.xml	34
taverna-workbench-impl/src/main/resources/sample.hs	72
taverna-workflow-explorer/src/main/java/org/apache/taverna/workbench/ui/workflowexplorer/WorkflowExplorer.java	477
taverna-workflow-explorer/src/main/java/org/apache/taverna/workbench/ui/workflowexplorer/WorkflowExplorerFactory.java	55
taverna-workflow-explorer/src/main/java/org/apache/taverna/workbench/ui/workflowexplorer/WorkflowExplorerTreeCellRenderer.java	154
taverna-workflow-explorer/src/main/java/org/apache/taverna/workbench/ui/workflowexplorer/WorkflowExplorerTreeModel.java	158
taverna-workflow-explorer/src/main/java/org/apache/taverna/workbench/ui/workflowexplorer/WorkflowExplorerTreeSelectionModel.java	16
taverna-workflow-explorer/src/main/resources/META-INF/spring/workflow-explorer-context-osgi.xml	16
taverna-workflow-explorer/src/main/resources/META-INF/spring/workflow-explorer-context.xml	16
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/actions/CopyGraphComponentAction.java	83
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/actions/CopyProcessorAction.java	21
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/actions/CutGraphComponentAction.java	92
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/actions/CutProcessorAction.java	36
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/actions/PasteGraphComponentAction.java	60
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/dndhandler/ServiceTransferHandler.java	75
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/menu/CopyGraphComponentMenuAction.java	23
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/menu/CopyProcessorMenuAction.java	29
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/menu/CutGraphComponentMenuAction.java	28
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/menu/CutProcessorMenuAction.java	39
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/menu/PasteGraphComponentMenuAction.java	39
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/toolbar/CopyToolbarAction.java	23
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/toolbar/CutToolbarAction.java	28
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/toolbar/PasteToolbarAction.java	39
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/workflowview/ShowExceptionRunnable.java	16
taverna-workflow-view/src/main/java/org/apache/taverna/workbench/ui/workflowview/WorkflowView.java	222
taverna-workflow-view/src/main/resources/META-INF/spring/workflow-view-context-osgi.xml	20
taverna-workflow-view/src/main/resources/META-INF/spring/workflow-view-context.xml	36