tomcat8-maven-plugin/src/main/java/org/apache/tomcat/maven/plugin/tomcat8/run/AbstractExecWarMojo.java [360:425]:
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            if ( serverXml != null && serverXml.exists() )
            {
                os.putArchiveEntry( new JarArchiveEntry( "conf/server.xml" ) );
                IOUtils.copy( new FileInputStream( serverXml ), os );
                os.closeArchiveEntry();
                properties.put( Tomcat8Runner.USE_SERVER_XML_KEY, Boolean.TRUE.toString() );
            }
            else
            {
                properties.put( Tomcat8Runner.USE_SERVER_XML_KEY, Boolean.FALSE.toString() );
            }

            os.putArchiveEntry( new JarArchiveEntry( "conf/web.xml" ) );
            IOUtils.copy( getClass().getResourceAsStream( "/conf/web.xml" ), os );
            os.closeArchiveEntry();

            properties.store( tmpPropertiesFileOutputStream, "created by Apache Tomcat Maven plugin" );

            tmpPropertiesFileOutputStream.flush();
            tmpPropertiesFileOutputStream.close();

            os.putArchiveEntry( new JarArchiveEntry( Tomcat8RunnerCli.STAND_ALONE_PROPERTIES_FILENAME ) );
            IOUtils.copy( new FileInputStream( tmpPropertiesFile ), os );
            os.closeArchiveEntry();

            // add tomcat classes
            for ( Artifact pluginArtifact : pluginArtifacts )
            {
                if ( StringUtils.equals( "org.apache.tomcat", pluginArtifact.getGroupId() ) //
                    || StringUtils.equals( "org.apache.tomcat.embed", pluginArtifact.getGroupId() ) //
                    || StringUtils.equals( "org.eclipse.jdt.core.compiler", pluginArtifact.getGroupId() ) //
                    || StringUtils.equals( "commons-cli", pluginArtifact.getArtifactId() ) //
                    || StringUtils.equals( "tomcat8-war-runner", pluginArtifact.getArtifactId() ) )
                {
                    JarFile jarFile = new JarFile( pluginArtifact.getFile() );
                    extractJarToArchive( jarFile, os, null );
                }
            }

            // add extra dependencies
            if ( extraDependencies != null && !extraDependencies.isEmpty() )
            {
                for ( Dependency dependency : extraDependencies )
                {
                    String version = dependency.getVersion();
                    if ( StringUtils.isEmpty( version ) )
                    {
                        version = findArtifactVersion( dependency );
                    }

                    if ( StringUtils.isEmpty( version ) )
                    {
                        throw new MojoExecutionException(
                            "Dependency '" + dependency.getGroupId() + "':'" + dependency.getArtifactId()
                                + "' does not have version specified" );
                    }

                    // String groupId, String artifactId, String version, String scope, String type
                    Artifact artifact = artifactFactory.createArtifact( dependency.getGroupId(), //
                                                                        dependency.getArtifactId(), //
                                                                        version, //
                                                                        dependency.getScope(), //
                                                                        dependency.getType() );

                    artifactResolver.resolve( artifact, this.remoteRepos, this.local );
                    JarFile jarFile = new JarFile( artifact.getFile() );
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tomcat8-maven-plugin/src/main/java/org/apache/tomcat/maven/plugin/tomcat8/run/AbstractStandaloneWarMojo.java [150:214]:
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            if ( serverXml != null && serverXml.exists() )
            {
                os.putArchiveEntry( new JarArchiveEntry( "conf/server.xml" ) );
                IOUtils.copy( new FileInputStream( serverXml ), os );
                os.closeArchiveEntry();
                properties.put( Tomcat8Runner.USE_SERVER_XML_KEY, Boolean.TRUE.toString() );
            }
            else
            {
                properties.put( Tomcat8Runner.USE_SERVER_XML_KEY, Boolean.FALSE.toString() );
            }

            os.putArchiveEntry( new JarArchiveEntry( "conf/web.xml" ) );
            IOUtils.copy( getClass().getResourceAsStream( "/conf/web.xml" ), os );
            os.closeArchiveEntry();

            properties.store( tmpPropertiesFileOutputStream, "created by Apache Tomcat Maven plugin" );

            tmpPropertiesFileOutputStream.flush();
            tmpPropertiesFileOutputStream.close();

            os.putArchiveEntry( new JarArchiveEntry( Tomcat8RunnerCli.STAND_ALONE_PROPERTIES_FILENAME ) );
            IOUtils.copy( new FileInputStream( tmpPropertiesFile ), os );
            os.closeArchiveEntry();

            // add tomcat classes
            for ( Artifact pluginArtifact : pluginArtifacts )
            {
                if ( StringUtils.equals( "org.apache.tomcat", pluginArtifact.getGroupId() ) //
                    || StringUtils.equals( "org.apache.tomcat.embed", pluginArtifact.getGroupId() ) //
                    || StringUtils.equals( "org.eclipse.jdt.core.compiler", pluginArtifact.getGroupId() ) //
                    || StringUtils.equals( "commons-cli", pluginArtifact.getArtifactId() ) //
                    || StringUtils.equals( "tomcat8-war-runner", pluginArtifact.getArtifactId() ) )
                {
                    JarFile jarFile = new JarFile( pluginArtifact.getFile() );
                    extractJarToArchive( jarFile, os, null );
                }
            }

            // add extra dependencies
            if ( extraDependencies != null && !extraDependencies.isEmpty() )
            {
                for ( Dependency dependency : extraDependencies )
                {
                    String version = dependency.getVersion();
                    if ( StringUtils.isEmpty( version ) )
                    {
                        version = findArtifactVersion( dependency );
                    }

                    if ( StringUtils.isEmpty( version ) )
                    {
                        throw new MojoExecutionException(
                            "Dependency '" + dependency.getGroupId() + "':'" + dependency.getArtifactId()
                                + "' does not have version specified" );
                    }
                    // String groupId, String artifactId, String version, String scope, String type
                    Artifact artifact = artifactFactory.createArtifact( dependency.getGroupId(), //
                                                                        dependency.getArtifactId(), //
                                                                        version, //
                                                                        dependency.getScope(), //
                                                                        dependency.getType() );

                    artifactResolver.resolve( artifact, this.remoteRepos, this.local );
                    JarFile jarFile = new JarFile( artifact.getFile() );
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