public void initialize()

in ConceptMapper/src/main/java/org/apache/uima/conceptMapper/ConceptMapper.java [252:349]
57 lines of code
7 McCabe index (conditional complexity)

  public void initialize(UimaContext uimaContext) throws ResourceInitializationException {
    super.initialize(uimaContext);

    // Process configration parameters
    try {
      // logger = new Logger (annotatorContext.getLogger ());
      logger = new Logger("ConceptMapper", uimaContext.getLogger());
      // tokenDebugFile = new FileWriter("/tmp/cm/tokens."+
      // Calendar.getInstance ().getTimeInMillis () + ".txt");
      // potentialMatchDebugFile = new FileWriter("/tmp/cm/pm."+
      // Calendar.getInstance ().getTimeInMillis () + ".txt");
      // findMatchDebugFile = new FileWriter("/tmp/cm/fm."+
      // Calendar.getInstance ().getTimeInMillis () + ".txt");
      // FileWriter dictDebugFile = new FileWriter("/tmp/cm/dict."+
      // Calendar.getInstance ().getTimeInMillis () + ".txt");

      tokenAnnotationName = (String) uimaContext
              .getConfigParameterValue(PARAM_TOKENANNOTATION);
      String tokenizerDescriptor = (String) uimaContext
              .getConfigParameterValue(PARAM_TOKENIZERDESCRIPTOR);

      tokenClassFeatureName = (String) uimaContext
              .getConfigParameterValue(PARAM_TOKENCLASSFEATURENAME);

      tokenTypeFeatureName = (String) uimaContext
              .getConfigParameterValue(PARAM_TOKENTYPEFEATURENAME);

      resultAnnotationName = (String) uimaContext
              .getConfigParameterValue(PARAM_ANNOTATION_NAME);
      resultEnclosingSpanName = (String) uimaContext
              .getConfigParameterValue(PARAM_ENCLOSINGSPAN);

      resultMatchedTextFeatureName = (String) uimaContext
              .getConfigParameterValue(PARAM_MATCHEDFEATURE);

      featureNames = (String[]) uimaContext.getConfigParameterValue(PARAM_FEATURE_LIST);
      attributeNames = (String[]) uimaContext.getConfigParameterValue(PARAM_ATTRIBUTE_LIST);

      spanFeatureStructureName = (String) uimaContext
              .getConfigParameterValue(PARAM_DATA_BLOCK_FS);

      tokenTextFeatureName = (String) uimaContext
              .getConfigParameterValue(PARAM_TOKENTEXTFEATURENAME);
      tokenClassWriteBackFeatureNames = (String[]) uimaContext
              .getConfigParameterValue(PARAM_TOKENCLASSWRITEBACKFEATURENAMES);

      tokenAnnotationName = (String) uimaContext
              .getConfigParameterValue(PARAM_TOKENANNOTATION);

      matchedTokensFeatureName = (String) uimaContext
              .getConfigParameterValue(PARAM_MATCHEDTOKENSFEATURENAME);

      Boolean sortElementsParam = (Boolean) uimaContext
              .getConfigParameterValue(PARAM_ORDERINDEPENDENTLOOKUP);
      sortElements = (sortElementsParam == null) ? false : sortElementsParam.booleanValue();

      searchStrategy = detectSearchStrategy((String) uimaContext
              .getConfigParameterValue(PARAM_SEARCHSTRATEGY));
      // System.err.println("SEARCH STRATEGY = " + searchStrategy);

      Boolean findAllMatchesParam = (Boolean) uimaContext
              .getConfigParameterValue(PARAM_FINDALLMATCHES);
      findAllMatches = (findAllMatchesParam == null) ? false : findAllMatchesParam.booleanValue();

      // always do order-independent lookup if performing "SkipAnyMatch"
      // lookups
      if (searchStrategy == SkipAnyMatch) {
        sortElements = true;
      }

      if (featureNames.length != attributeNames.length) {
        throw new Exception("AttributeList and FeatureList are inconsistent");
      }
      // for (int i = 0; i < featureNames.length; i++ )
      // {
      // logger.logInfo ("Attribute \"" + attributeNames [i] + "\" mapped
      // to feature \"" + featureNames [i] + "\"");
      // }

      tokenNormalizer = new TokenNormalizer(uimaContext, logger);
      tokenFilter = new TokenFilter(tokenAnnotationName, tokenTypeFeatureName,
              tokenClassFeatureName, logger);
      tokenFilter.initConfig(uimaContext);

      dict = (DictionaryResource) uimaContext.getResourceObject(PARAM_DICT_FILE);
      if (!dict.isLoaded()) {
        // logger.logInfo("dictionary not yet loaded");
        dict.loadDictionaryContents(uimaContext, logger, tokenAnnotationName,
                tokenTypeFeatureName, tokenClassFeatureName, tokenizerDescriptor);
        // logger.logInfo( "now is loaded: "+dict.toString() );
        // System.err.println ("NEW DICTIONARY:\n" + dict.toString());
        // debugWrite (dictDebugFile, dict.toString());
      }

    } catch (Exception e) {
      throw new ResourceInitializationException(e);
    }
  }