Path	Lines of Code
MANIFEST.in	1
pyproject.toml	28
scripts/convert_ipynb_to_mdx.py	331
setup.cfg	59
setup.py	140
sphinx/source/conf.py	22
sphinx/source/docs.py	150
src/beanmachine/__init__.py	1
src/beanmachine/applications/__init__.py	1
src/beanmachine/applications/clara/__init__.py	1
src/beanmachine/applications/clara/nmc.py	170
src/beanmachine/applications/clara/nmc_df.py	148
src/beanmachine/applications/hme/__init__.py	18
src/beanmachine/applications/hme/abstract_linear_model.py	184
src/beanmachine/applications/hme/abstract_model.py	453
src/beanmachine/applications/hme/configs.py	59
src/beanmachine/applications/hme/interface.py	16
src/beanmachine/applications/hme/null_mixture_model.py	191
src/beanmachine/applications/hme/patsy_mixed.py	49
src/beanmachine/applications/hme/priors.py	99
src/beanmachine/graph/cavi.cpp	132
src/beanmachine/graph/distribution/bernoulli.cpp	110
src/beanmachine/graph/distribution/bernoulli.h	43
src/beanmachine/graph/distribution/bernoulli_logit.cpp	118
src/beanmachine/graph/distribution/bernoulli_logit.h	43
src/beanmachine/graph/distribution/bernoulli_noisy_or.cpp	119
src/beanmachine/graph/distribution/bernoulli_noisy_or.h	42
src/beanmachine/graph/distribution/beta.cpp	202
src/beanmachine/graph/distribution/beta.h	51
src/beanmachine/graph/distribution/bimixture.cpp	208
src/beanmachine/graph/distribution/bimixture.h	47
src/beanmachine/graph/distribution/binomial.cpp	134
src/beanmachine/graph/distribution/binomial.h	42
src/beanmachine/graph/distribution/categorical.cpp	96
src/beanmachine/graph/distribution/categorical.h	43
src/beanmachine/graph/distribution/dirichlet.cpp	81
src/beanmachine/graph/distribution/dirichlet.h	32
src/beanmachine/graph/distribution/distribution.cpp	184
src/beanmachine/graph/distribution/distribution.h	77
src/beanmachine/graph/distribution/flat.cpp	77
src/beanmachine/graph/distribution/flat.h	28
src/beanmachine/graph/distribution/gamma.cpp	172
src/beanmachine/graph/distribution/gamma.h	47
src/beanmachine/graph/distribution/half_cauchy.cpp	161
src/beanmachine/graph/distribution/half_cauchy.h	44
src/beanmachine/graph/distribution/half_normal.cpp	154
src/beanmachine/graph/distribution/half_normal.h	43
src/beanmachine/graph/distribution/normal.cpp	188
src/beanmachine/graph/distribution/normal.h	44
src/beanmachine/graph/distribution/student_t.cpp	262
src/beanmachine/graph/distribution/student_t.h	52
src/beanmachine/graph/distribution/tabular.cpp	97
src/beanmachine/graph/distribution/tabular.h	25
src/beanmachine/graph/factor/exp_product.cpp	70
src/beanmachine/graph/factor/exp_product.h	17
src/beanmachine/graph/factor/factor.cpp	22
src/beanmachine/graph/factor/factor.h	22
src/beanmachine/graph/gibbs.cpp	127
src/beanmachine/graph/global/global_mh.cpp	44
src/beanmachine/graph/global/global_mh.h	23
src/beanmachine/graph/global/global_state.cpp	186
src/beanmachine/graph/global/global_state.h	31
src/beanmachine/graph/global/hmc.cpp	14
src/beanmachine/graph/global/hmc.h	13
src/beanmachine/graph/global/nuts.cpp	13
src/beanmachine/graph/global/nuts.h	13
src/beanmachine/graph/global/proposer/global_proposer.h	20
src/beanmachine/graph/global/proposer/hmc_proposer.cpp	80
src/beanmachine/graph/global/proposer/hmc_proposer.h	25
src/beanmachine/graph/global/proposer/hmc_util.cpp	32
src/beanmachine/graph/global/proposer/hmc_util.h	21
src/beanmachine/graph/global/proposer/nuts_proposer.cpp	283
src/beanmachine/graph/global/proposer/nuts_proposer.h	72
src/beanmachine/graph/global/proposer/random_walk_proposer.cpp	21
src/beanmachine/graph/global/proposer/random_walk_proposer.h	12
src/beanmachine/graph/global/random_walk.cpp	10
src/beanmachine/graph/global/random_walk.h	10
src/beanmachine/graph/global/util.cpp	25
src/beanmachine/graph/global/util.h	6
src/beanmachine/graph/graph.cpp	1053
src/beanmachine/graph/graph.h	595
src/beanmachine/graph/graph.pyi	368
src/beanmachine/graph/mh.cpp	229
src/beanmachine/graph/mh.h	77
src/beanmachine/graph/nmc.cpp	39
src/beanmachine/graph/nmc.h	23
src/beanmachine/graph/nmc_stepper.h	25
src/beanmachine/graph/operator/backward.cpp	203
src/beanmachine/graph/operator/controlop.cpp	60
src/beanmachine/graph/operator/controlop.h	35
src/beanmachine/graph/operator/gradient.cpp	248
src/beanmachine/graph/operator/linalgop.cpp	244
src/beanmachine/graph/operator/linalgop.h	80
src/beanmachine/graph/operator/multiaryop.cpp	211
src/beanmachine/graph/operator/multiaryop.h	103
src/beanmachine/graph/operator/operator.cpp	58
src/beanmachine/graph/operator/operator.h	41
src/beanmachine/graph/operator/register.cpp	94
src/beanmachine/graph/operator/stochasticop.cpp	144
src/beanmachine/graph/operator/stochasticop.h	64
src/beanmachine/graph/operator/unaryop.cpp	495
src/beanmachine/graph/operator/unaryop.h	265
src/beanmachine/graph/perf_report.cpp	226
src/beanmachine/graph/profiler.cpp	23
src/beanmachine/graph/profiler.h	38
src/beanmachine/graph/proposer/beta.cpp	17
src/beanmachine/graph/proposer/beta.h	15
src/beanmachine/graph/proposer/default_initializer.cpp	33
src/beanmachine/graph/proposer/default_initializer.h	7
src/beanmachine/graph/proposer/delta.h	18
src/beanmachine/graph/proposer/from_probability_to_dirichlet_proposer_adapter.cpp	27
src/beanmachine/graph/proposer/from_probability_to_dirichlet_proposer_adapter.h	17
src/beanmachine/graph/proposer/gamma.cpp	16
src/beanmachine/graph/proposer/gamma.h	15
src/beanmachine/graph/proposer/mixture.cpp	33
src/beanmachine/graph/proposer/mixture.h	25
src/beanmachine/graph/proposer/nmc_proposer.cpp	81
src/beanmachine/graph/proposer/normal.cpp	16
src/beanmachine/graph/proposer/normal.h	15
src/beanmachine/graph/proposer/proposer.h	15
src/beanmachine/graph/proposer/trunc_cauchy.cpp	22
src/beanmachine/graph/proposer/trunc_cauchy.h	17
src/beanmachine/graph/pybindings.cpp	367
src/beanmachine/graph/pybindings.h	61
src/beanmachine/graph/rejection.cpp	41
src/beanmachine/graph/stepper/single_site/default_single_site_stepping_method.cpp	39
src/beanmachine/graph/stepper/single_site/default_single_site_stepping_method.h	20
src/beanmachine/graph/stepper/single_site/nmc_dirichlet_beta_single_site_stepping_method.cpp	62
src/beanmachine/graph/stepper/single_site/nmc_dirichlet_beta_single_site_stepping_method.h	19
src/beanmachine/graph/stepper/single_site/nmc_dirichlet_gamma_single_site_stepping_method.cpp	113
src/beanmachine/graph/stepper/single_site/nmc_dirichlet_gamma_single_site_stepping_method.h	27
src/beanmachine/graph/stepper/single_site/nmc_scalar_single_site_stepping_method.cpp	40
src/beanmachine/graph/stepper/single_site/nmc_scalar_single_site_stepping_method.h	19
src/beanmachine/graph/stepper/single_site/sequential_single_site_stepper.cpp	64
src/beanmachine/graph/stepper/single_site/sequential_single_site_stepper.h	26
src/beanmachine/graph/stepper/single_site/single_site_stepper.h	24
src/beanmachine/graph/stepper/single_site/single_site_stepping_method.h	16
src/beanmachine/graph/stepper/stepper.cpp	1
src/beanmachine/graph/stepper/stepper.h	15
src/beanmachine/graph/support.cpp	92
src/beanmachine/graph/to_dot.cpp	228
src/beanmachine/graph/transform/logtransform.cpp	60
src/beanmachine/graph/transform/transform.h	24
src/beanmachine/graph/util.cpp	98
src/beanmachine/graph/util.h	38
src/beanmachine/ppl/__init__.py	53
src/beanmachine/ppl/compiler/__init__.py	1
src/beanmachine/ppl/compiler/ast_patterns.py	346
src/beanmachine/ppl/compiler/ast_tools.py	30
src/beanmachine/ppl/compiler/beanstalk_common.py	2
src/beanmachine/ppl/compiler/bm_graph_builder.py	705
src/beanmachine/ppl/compiler/bm_to_bmg.py	411
src/beanmachine/ppl/compiler/bmg_node_types.py	103
src/beanmachine/ppl/compiler/bmg_nodes.py	611
src/beanmachine/ppl/compiler/bmg_requirements.py	193
src/beanmachine/ppl/compiler/bmg_types.py	391
src/beanmachine/ppl/compiler/error_report.py	85
src/beanmachine/ppl/compiler/fix_additions.py	32
src/beanmachine/ppl/compiler/fix_beta_conjugate_prior.py	119
src/beanmachine/ppl/compiler/fix_bool_arithmetic.py	53
src/beanmachine/ppl/compiler/fix_bool_comparisons.py	97
src/beanmachine/ppl/compiler/fix_logsumexp.py	24
src/beanmachine/ppl/compiler/fix_matrix_scale.py	19
src/beanmachine/ppl/compiler/fix_multiary_ops.py	64
src/beanmachine/ppl/compiler/fix_normal_conjugate_prior.py	86
src/beanmachine/ppl/compiler/fix_observations.py	38
src/beanmachine/ppl/compiler/fix_observe_true.py	53
src/beanmachine/ppl/compiler/fix_problem.py	52
src/beanmachine/ppl/compiler/fix_problems.py	69
src/beanmachine/ppl/compiler/fix_requirements.py	209
src/beanmachine/ppl/compiler/fix_unsupported.py	199
src/beanmachine/ppl/compiler/fix_vectorized_models.py	177
src/beanmachine/ppl/compiler/gen_bmg_cpp.py	168
src/beanmachine/ppl/compiler/gen_bmg_graph.py	105
src/beanmachine/ppl/compiler/gen_bmg_python.py	152
src/beanmachine/ppl/compiler/gen_builder.py	47
src/beanmachine/ppl/compiler/gen_dot.py	58
src/beanmachine/ppl/compiler/graph_labels.py	220
src/beanmachine/ppl/compiler/hint.py	6
src/beanmachine/ppl/compiler/internal_error.py	51
src/beanmachine/ppl/compiler/lattice_typer.py	256
src/beanmachine/ppl/compiler/patterns.py	375
src/beanmachine/ppl/compiler/performance_report.py	40
src/beanmachine/ppl/compiler/profiler.py	114
src/beanmachine/ppl/compiler/rules.py	679
src/beanmachine/ppl/compiler/runtime.py	990
src/beanmachine/ppl/compiler/single_assignment.py	1528
src/beanmachine/ppl/compiler/sizer.py	152
src/beanmachine/ppl/compiler/support.py	158
src/beanmachine/ppl/compiler/testlib/__init__.py	1
src/beanmachine/ppl/compiler/testlib/conjugate_models.py	37
src/beanmachine/ppl/compiler/typer_base.py	64
src/beanmachine/ppl/conftest.py	5
src/beanmachine/ppl/diagnostics/__init__.py	2
src/beanmachine/ppl/diagnostics/common_plots.py	70
src/beanmachine/ppl/diagnostics/common_statistics.py	87
src/beanmachine/ppl/diagnostics/diagnostics.py	208
src/beanmachine/ppl/distributions/__init__.py	3
src/beanmachine/ppl/distributions/flat.py	15
src/beanmachine/ppl/distributions/unit.py	38
src/beanmachine/ppl/experimental/__init__.py	1
src/beanmachine/ppl/experimental/abc/__init__.py	1
src/beanmachine/ppl/experimental/abc/abc_infer.py	57
src/beanmachine/ppl/experimental/abc/abc_smc_infer.py	140
src/beanmachine/ppl/experimental/abc/adaptive_abc_smc_infer.py	183
src/beanmachine/ppl/experimental/gp/__init__.py	3
src/beanmachine/ppl/experimental/gp/kernels.py	157
src/beanmachine/ppl/experimental/gp/likelihoods.py	80
src/beanmachine/ppl/experimental/gp/models.py	65
src/beanmachine/ppl/experimental/inference_compilation/__init__.py	1
src/beanmachine/ppl/experimental/inference_compilation/ic_infer.py	399
src/beanmachine/ppl/experimental/inference_compilation/utils.py	12
src/beanmachine/ppl/experimental/neutra/__init__.py	1
src/beanmachine/ppl/experimental/neutra/iafflow.py	63
src/beanmachine/ppl/experimental/neutra/iaflayer.py	55
src/beanmachine/ppl/experimental/neutra/iafmcmc_infer.py	54
src/beanmachine/ppl/experimental/neutra/iafmcmc_proposer.py	92
src/beanmachine/ppl/experimental/neutra/maskedautoencoder.py	76
src/beanmachine/ppl/experimental/neutra/maskedlinear.py	20
src/beanmachine/ppl/experimental/neutra/train.py	36
src/beanmachine/ppl/experimental/variable_elimination/__init__.py	1
src/beanmachine/ppl/experimental/variable_elimination/util.py	2
src/beanmachine/ppl/experimental/variable_elimination/variable_elimination.py	37
src/beanmachine/ppl/experimental/vi/__init__.py	1
src/beanmachine/ppl/experimental/vi/mean_field_variational_approximation.py	111
src/beanmachine/ppl/experimental/vi/optim.py	160
src/beanmachine/ppl/experimental/vi/variational_infer.py	205
src/beanmachine/ppl/inference/__init__.py	40
src/beanmachine/ppl/inference/base_inference.py	104
src/beanmachine/ppl/inference/bmg_inference.py	211
src/beanmachine/ppl/inference/compositional_infer.py	144
src/beanmachine/ppl/inference/hmc_inference.py	79
src/beanmachine/ppl/inference/monte_carlo_samples.py	150
src/beanmachine/ppl/inference/nuts_inference.py	91
src/beanmachine/ppl/inference/predictive.py	100
src/beanmachine/ppl/inference/proposer/__init__.py	1
src/beanmachine/ppl/inference/proposer/base_proposer.py	12
src/beanmachine/ppl/inference/proposer/base_single_site_proposer.py	37
src/beanmachine/ppl/inference/proposer/hmc_proposer.py	217
src/beanmachine/ppl/inference/proposer/hmc_utils.py	147
src/beanmachine/ppl/inference/proposer/nmc/__init__.py	14
src/beanmachine/ppl/inference/proposer/nmc/single_site_half_space_nmc_proposer.py	62
src/beanmachine/ppl/inference/proposer/nmc/single_site_real_space_nmc_proposer.py	151
src/beanmachine/ppl/inference/proposer/nmc/single_site_simplex_space_nmc_proposer.py	60
src/beanmachine/ppl/inference/proposer/nuts_proposer.py	232
src/beanmachine/ppl/inference/proposer/sequential_proposer.py	21
src/beanmachine/ppl/inference/proposer/single_site_ancestral_proposer.py	8
src/beanmachine/ppl/inference/proposer/single_site_random_walk_proposer.py	86
src/beanmachine/ppl/inference/proposer/single_site_uniform_proposer.py	15
src/beanmachine/ppl/inference/sampler.py	71
src/beanmachine/ppl/inference/single_site_ancestral_mh.py	9
src/beanmachine/ppl/inference/single_site_inference.py	29
src/beanmachine/ppl/inference/single_site_nmc.py	65
src/beanmachine/ppl/inference/single_site_random_walk.py	28
src/beanmachine/ppl/inference/single_site_uniform_mh.py	9
src/beanmachine/ppl/inference/utils.py	84
src/beanmachine/ppl/legacy/__init__.py	1
src/beanmachine/ppl/legacy/inference/__init__.py	33
src/beanmachine/ppl/legacy/inference/abstract_infer.py	152
src/beanmachine/ppl/legacy/inference/abstract_mh_infer.py	288
src/beanmachine/ppl/legacy/inference/compositional_infer.py	81
src/beanmachine/ppl/legacy/inference/proposer/__init__.py	18
src/beanmachine/ppl/legacy/inference/proposer/abstract_single_site_proposer.py	33
src/beanmachine/ppl/legacy/inference/proposer/abstract_single_site_single_step_proposer.py	81
src/beanmachine/ppl/legacy/inference/proposer/newtonian_monte_carlo_utils.py	81
src/beanmachine/ppl/legacy/inference/proposer/normal_eig.py	32
src/beanmachine/ppl/legacy/inference/proposer/single_site_ancestral_proposer.py	23
src/beanmachine/ppl/legacy/inference/proposer/single_site_half_space_newtonian_monte_carlo_proposer.py	75
src/beanmachine/ppl/legacy/inference/proposer/single_site_hamiltonian_monte_carlo_proposer.py	257
src/beanmachine/ppl/legacy/inference/proposer/single_site_newtonian_monte_carlo_proposer.py	106
src/beanmachine/ppl/legacy/inference/proposer/single_site_no_u_turn_sampler_proposer.py	428
src/beanmachine/ppl/legacy/inference/proposer/single_site_random_walk_proposer.py	150
src/beanmachine/ppl/legacy/inference/proposer/single_site_real_space_newtonian_monte_carlo_proposer.py	171
src/beanmachine/ppl/legacy/inference/proposer/single_site_simplex_newtonian_monte_carlo_proposer.py	75
src/beanmachine/ppl/legacy/inference/proposer/single_site_uniform_proposer.py	54
src/beanmachine/ppl/legacy/inference/rejection_sampling_infer.py	97
src/beanmachine/ppl/legacy/inference/sampler.py	58
src/beanmachine/ppl/legacy/inference/single_site_ancestral_mh.py	11
src/beanmachine/ppl/legacy/inference/single_site_hamiltonian_monte_carlo.py	29
src/beanmachine/ppl/legacy/inference/single_site_newtonian_monte_carlo.py	27
src/beanmachine/ppl/legacy/inference/single_site_no_u_turn_sampler.py	27
src/beanmachine/ppl/legacy/inference/single_site_random_walk.py	18
src/beanmachine/ppl/legacy/inference/single_site_uniform_mh.py	17
src/beanmachine/ppl/legacy/inference/utils.py	15
src/beanmachine/ppl/legacy/world/__init__.py	20
src/beanmachine/ppl/legacy/world/diff.py	40
src/beanmachine/ppl/legacy/world/diff_stack.py	90
src/beanmachine/ppl/legacy/world/marginal_table.py	32
src/beanmachine/ppl/legacy/world/variable.py	128
src/beanmachine/ppl/legacy/world/world.py	439
src/beanmachine/ppl/legacy/world/world_vars.py	41
src/beanmachine/ppl/model/__init__.py	19
src/beanmachine/ppl/model/rv_identifier.py	21
src/beanmachine/ppl/model/statistical_model.py	49
src/beanmachine/ppl/model/utils.py	28
src/beanmachine/ppl/testlib/__init__.py	1
src/beanmachine/ppl/testlib/abstract_conjugate.py	324
src/beanmachine/ppl/testlib/hypothesis_testing.py	81
src/beanmachine/ppl/utils/__init__.py	14
src/beanmachine/ppl/utils/dotbuilder.py	207
src/beanmachine/ppl/utils/equivalence.py	22
src/beanmachine/ppl/utils/graph.py	215
src/beanmachine/ppl/utils/item_counter.py	19
src/beanmachine/ppl/utils/memoize.py	86
src/beanmachine/ppl/utils/set_of_tensors.py	20
src/beanmachine/ppl/utils/tensorops.py	38
src/beanmachine/ppl/utils/treeprinter.py	67
src/beanmachine/ppl/utils/unique_name.py	21
src/beanmachine/ppl/world/__init__.py	21
src/beanmachine/ppl/world/base_world.py	21
src/beanmachine/ppl/world/initialize_fn.py	16
src/beanmachine/ppl/world/utils.py	94
src/beanmachine/ppl/world/variable.py	26
src/beanmachine/ppl/world/world.py	109
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src/beanmachine/tutorials/utils/nba.py	374
src/beanmachine/tutorials/utils/plots.py	170
src/beanmachine/tutorials/utils/radon.py	519
website/babel.config.js	3
website/documentation.toml	40
website/docusaurus.config.js	111
website/sidebars.js	55
website/src/components/CellOutput.jsx	28
website/src/components/LinkButtons.jsx	12
website/src/components/Plotting.jsx	37
website/src/css/custom.css	16
website/src/pages/index.js	112
website/src/pages/styles.module.css	29