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Intro

For duplication, we look at places in code where there are 6 or more lines of code that are exactly the same.
Before duplication is calculated, the code is cleaned to remove empty lines, comments, and frequently duplicated constructs such as imports.
You should aim at having as little as possible (<5%) of duplicated code as high-level of duplication can lead to maintenance difficulties, poor factoring, and logical contradictions.

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Duplication Overall

24% duplication:

3,179 cleaned lines of cleaned code (without empty lines, comments, and frequently duplicated constructs such as imports)
791 duplicated lines

123 duplicates

Duplication per Extension

Duplication per Component (primary)

Duplication Between Components (50+ lines)

Download: SVG DOT (open online Graphviz editor)

From Component --> To Component	Duplicated Lines	File Pairs	Details
exploration_scripts/summer_2019_data_review (26%) --> model_build_scripts (87%)	178	2 file pairs	details...
exploration_scripts/summer_2019_data_review (13%) --> exploration_scripts/vaccine_efficacy (44%)	91	1 file pair	details...
exploration_scripts/vaccine_efficacy (29%) --> model_build_scripts (29%)	60	2 file pairs	details...

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Longest Duplicates

The list of 20 longest duplicates.

See data for all 123 duplicates...

Size	#	Folders	Files	Lines	Code
35	x 2	incidenceMapR/R incidenceMapR/R	effectsModel.R latentFieldModel.R	29:81 (57%) 26:78 (19%)	view
28	x 2	exploration_scripts/summer_2019_data_review exploration_scripts/summer_2019_data_review	buildModelsForDataReview.R buildModelsForDataReview.R	206:247 (8%) 515:556 (8%)	view
22	x 2	exploration_scripts/summer_2019_data_review model_build_scripts	buildModelsForDataReview.R buildLatentFieldModelsForDeployment.R	159:189 (6%) 35:65 (42%)	view
15	x 2	incidenceMapR/R incidenceMapR/R	fluVaxEfficacyModel.R smoothModel.R	61:82 (11%) 64:85 (12%)	view
13	x 2	modelVisualizeR modelVisualizeR	demoEffectsModel.R demoSmoothModel.R	8:30 (37%) 9:31 (14%)	view
11	x 2	exploration_scripts/vaccine_efficacy exploration_scripts/vaccine_efficacy	develop_vaccine_efficacy.R develop_vaccine_efficacy.R	52:67 (10%) 118:131 (10%)	view
11	x 2	exploration_scripts/summer_2019_data_review model_build_scripts	buildModelsForDataReview.R build_logistic_DeDx_model.R	269:284 (3%) 43:60 (22%)	view
11	x 2	incidenceMapR/R incidenceMapR/R	effectsModel.R latentFieldModel.R	84:97 (18%) 80:93 (6%)	view
10	x 2	exploration_scripts/summer_2019_data_review exploration_scripts/summer_2019_data_review	buildModelsForDataReview.R buildModelsForDataReview.R	167:180 (2%) 264:277 (2%)	view
10	x 2	exploration_scripts/summer_2019_data_review model_build_scripts	buildModelsForDataReview.R buildLatentFieldModelsForDeployment.R	484:496 (2%) 51:63 (19%)	view
10	x 2	exploration_scripts/summer_2019_data_review exploration_scripts/summer_2019_data_review	buildModelsForDataReview.R buildModelsForDataReview.R	272:284 (2%) 383:395 (2%)	view
10	x 2	exploration_scripts/summer_2019_data_review model_build_scripts	buildModelsForDataReview.R buildLatentFieldModelsForDeployment.R	264:277 (2%) 43:56 (19%)	view
10	x 2	incidenceMapR/R incidenceMapR/R	fluVaxEfficacyModel.R latentFieldModel.R	158:172 (7%) 167:181 (5%)	view
10	x 2	exploration_scripts/summer_2019_data_review model_build_scripts	buildModelsForDataReview.R build_logistic_DeDx_model.R	383:395 (2%) 48:60 (20%)	view
10	x 2	incidenceMapR/R incidenceMapR/R	fluVaxEfficacyModel.R smoothModel.R	158:172 (7%) 152:166 (8%)	view
10	x 2	exploration_scripts/summer_2019_data_review exploration_scripts/summer_2019_data_review	buildModelsForDataReview.R buildModelsForDataReview.R	175:187 (2%) 484:496 (2%)	view
10	x 2	incidenceMapR/R incidenceMapR/R	latentFieldModel.R smoothModel.R	167:181 (5%) 152:166 (8%)	view
9	x 2	exploration_scripts/summer_2019_data_review exploration_scripts/summer_2019_data_review	buildModelsForDataReview.R buildModelsForDataReview.R	193:203 (2%) 502:512 (2%)	view
9	x 2	exploration_scripts/summer_2019_data_review exploration_scripts/summer_2019_data_review	buildModelsForDataReview.R buildModelsForDataReview.R	161:172 (2%) 463:474 (2%)	view
9	x 2	exploration_scripts/vaccine_efficacy exploration_scripts/vaccine_efficacy	develop_vaccine_efficacy.R develop_vaccine_efficacy.R	74:84 (8%) 139:149 (8%)	view

Duplicated Units

The list of top 1 duplicated units.

See data for all 1 unit duplicate

Size	#	Folders	Files	Lines	Code
7	x 2	api_service/seattle_flu_incidence_mapper api_service/seattle_flu_incidence_mapper	apikey_auth.py jwt.py	0:0 0:0	view