in graspologic/layouts/__main__.py [0:0]
def _parser() -> argparse.ArgumentParser:
root_parser = argparse.ArgumentParser(
prog="python -m graspologic.layouts",
description="Runnable module that automatically generates a layout of a graph "
"by a provided edge list",
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
)
root_parser.add_argument(
"--verbose",
type=bool,
required=False,
default=False,
)
subparsers = root_parser.add_subparsers(
dest="COMMAND",
help="auto layout via umap, tsne, or a pure render only mode",
)
subparsers.required = True
n2vumap_parser = subparsers.add_parser(
"n2vumap",
help="Auto layout using UMAP for dimensionality reduction",
)
_common_edge_list_args(n2vumap_parser)
n2vumap_parser.set_defaults(func=_umap)
n2vtsne_parser = subparsers.add_parser(
"n2vtsne",
help="Auto layout using tSNE for dimensionality reduction",
)
_common_edge_list_args(n2vtsne_parser)
n2vtsne_parser.set_defaults(func=_tsne)
render_parser = subparsers.add_parser(
"render",
help="Renders a graph via an input file",
)
render_parser.set_defaults(func=_render)
render_parser.add_argument(
"--edge_list",
help="edge list in csv file. must be source,target,weight.",
required=False,
default=None,
)
render_parser.add_argument(
"--skip_header",
help="skip first line in csv file, corresponding to header.",
action="store_true",
required=False,
default=False,
)
render_parser.add_argument(
"--location_file",
help="location file used for node positioning, partitioning, and coloring",
required=True,
default=None,
)
render_parser.add_argument(
"--image_file",
help="output path and filename for generated image file. ",
required=True,
default=None,
)
render_parser.add_argument(
"--dark_background",
dest="light_background",
action="store_false",
default=True,
)
render_parser.add_argument(
"--vertex_alpha",
help="Alpha (transparency) of vertices in visualization (default 0.9)",
type=float,
required=False,
default=0.9,
)
render_parser.add_argument(
"--vertex_line_width",
help="Line width of vertex outline (default 0.01)",
type=float,
required=False,
default=0.01,
)
render_parser.add_argument(
"--edge_line_width",
help="Line width of edge (default 0.5)",
type=float,
required=False,
default=0.5,
)
render_parser.add_argument(
"--edge_alpha",
help="Alpha (transparency) of edges in visualization (default 0.2)",
type=float,
required=False,
default=0.2,
)
render_parser.add_argument(
"--figure_width",
help="Width of figure (default 15.0)",
type=float,
required=False,
default=15.0,
)
render_parser.add_argument(
"--figure_height",
help="Height of figure (default 15.0)",
type=float,
required=False,
default=15.0,
)
render_parser.add_argument(
"--vertex_shape",
help="Matplotlib Marker for the vertex shape.",
required=False,
default="o",
)
render_parser.add_argument(
"--arrows",
dest="arrows",
action="store_true",
default=False,
)
render_parser.add_argument(
"--dpi",
help="Set dpi for image",
type=int,
required=False,
default=500,
)
return root_parser