id: 1 unit: def __init__() file: vihds/parameters.py start line: 0 end line: 0 size: 122 LOC McCabe index: 33 number of parameters: 5 id: 2 unit: def combined_treatments() file: vihds/plotting.py start line: 0 end line: 0 size: 66 LOC McCabe index: 10 number of parameters: 2 id: 3 unit: def make_images() file: vihds/xval.py start line: 0 end line: 0 size: 60 LOC McCabe index: 7 number of parameters: 1 id: 4 unit: def xval_treatments() file: vihds/plotting.py start line: 0 end line: 0 size: 54 LOC McCabe index: 9 number of parameters: 2 id: 5 unit: def xval_individual_2treatments() file: vihds/plotting.py start line: 0 end line: 0 size: 53 LOC McCabe index: 8 number of parameters: 2 id: 6 unit: def __init__() file: models/dr_constant.py start line: 0 end line: 0 size: 49 LOC McCabe index: 6 number of parameters: 7 id: 7 unit: def xval_individual() file: vihds/plotting.py start line: 0 end line: 0 size: 48 LOC McCabe index: 7 number of parameters: 2 id: 8 unit: def xval_global_parameters() file: vihds/plotting.py start line: 0 end line: 0 size: 48 LOC McCabe index: 17 number of parameters: 2 id: 9 unit: def xval_fit_summary() file: vihds/plotting.py start line: 0 end line: 0 size: 47 LOC McCabe index: 10 number of parameters: 3 id: 10 unit: def xval_variable_parameters() file: vihds/plotting.py start line: 0 end line: 0 size: 47 LOC McCabe index: 18 number of parameters: 2 id: 11 unit: def _evaluate_elbo_and_plot() file: vihds/training.py start line: 0 end line: 0 size: 47 LOC McCabe index: 9 number of parameters: 5 id: 12 unit: def instantiate_from_specs() file: vihds/parameters.py start line: 0 end line: 0 size: 44 LOC McCabe index: 7 number of parameters: 3 id: 13 unit: def run_graph() file: vihds/run_inference_graph.py start line: 0 end line: 0 size: 40 LOC McCabe index: 14 number of parameters: 2 id: 14 unit: def create_parser() file: vihds/run_xval.py start line: 0 end line: 0 size: 38 LOC McCabe index: 3 number of parameters: 1 id: 15 unit: def run() file: vihds/training.py start line: 0 end line: 0 size: 37 LOC McCabe index: 12 number of parameters: 1 id: 16 unit: def load() file: data/procdata.py start line: 0 end line: 0 size: 35 LOC McCabe index: 14 number of parameters: 2 id: 17 unit: def __init__() file: vihds/training.py start line: 0 end line: 0 size: 34 LOC McCabe index: 11 number of parameters: 6 id: 18 unit: def forward() file: models/relay_constant.py start line: 0 end line: 0 size: 33 LOC McCabe index: 4 number of parameters: 3 id: 19 unit: def apply_defaults_params() file: vihds/config.py start line: 0 end line: 0 size: 33 LOC McCabe index: 2 number of parameters: 1 id: 20 unit: def __init__() file: vihds/config.py start line: 0 end line: 0 size: 31 LOC McCabe index: 9 number of parameters: 2 id: 21 unit: def process_node_args() file: vihds/inference_graph.py start line: 0 end line: 0 size: 31 LOC McCabe index: 12 number of parameters: 3 id: 22 unit: def propagate_params() file: vihds/run_inference_graph.py start line: 0 end line: 0 size: 31 LOC McCabe index: 5 number of parameters: 3 id: 23 unit: def forward() file: models/degrader_constant.py start line: 0 end line: 0 size: 30 LOC McCabe index: 4 number of parameters: 3 id: 24 unit: def initialize_state() file: models/relay_constant.py start line: 0 end line: 0 size: 30 LOC McCabe index: 1 number of parameters: 3 id: 25 unit: def initialize_state() file: models/degrader_constant.py start line: 0 end line: 0 size: 29 LOC McCabe index: 1 number of parameters: 3 id: 26 unit: def forward() file: models/dr_constant.py start line: 0 end line: 0 size: 27 LOC McCabe index: 4 number of parameters: 3 id: 27 unit: def build_datasets() file: vihds/datasets.py start line: 0 end line: 0 size: 27 LOC McCabe index: 4 number of parameters: 2 id: 28 unit: def initialize_state() file: models/relay_constant.py start line: 0 end line: 0 size: 26 LOC McCabe index: 1 number of parameters: 3 id: 29 unit: def save() file: vihds/xval.py start line: 0 end line: 0 size: 26 LOC McCabe index: 1 number of parameters: 1 id: 30 unit: def initialize_state() file: models/degrader_constant.py start line: 0 end line: 0 size: 25 LOC McCabe index: 1 number of parameters: 3 id: 31 unit: def load() file: vihds/xval.py start line: 0 end line: 0 size: 23 LOC McCabe index: 2 number of parameters: 2 id: 32 unit: def initialize_state() file: models/dr_constant.py start line: 0 end line: 0 size: 22 LOC McCabe index: 1 number of parameters: 3 id: 33 unit: def build_p_unconditioned() file: vihds/encoders.py start line: 0 end line: 0 size: 22 LOC McCabe index: 7 number of parameters: 3 id: 34 unit: def build_p_conditioned() file: vihds/encoders.py start line: 0 end line: 0 size: 22 LOC McCabe index: 7 number of parameters: 3 id: 35 unit: def load_global_cond() file: vihds/parameters.py start line: 0 end line: 0 size: 22 LOC McCabe index: 8 number of parameters: 2 id: 36 unit: def __init__() file: vihds/xval.py start line: 0 end line: 0 size: 22 LOC McCabe index: 1 number of parameters: 3 id: 37 unit: def __init__() file: models/dr_blackbox.py start line: 0 end line: 0 size: 21 LOC McCabe index: 1 number of parameters: 2 id: 38 unit: def forward() file: vihds/encoders.py start line: 0 end line: 0 size: 21 LOC McCabe index: 7 number of parameters: 4 id: 39 unit: def evaluate_q() file: vihds/encoders.py start line: 0 end line: 0 size: 21 LOC McCabe index: 5 number of parameters: 2 id: 40 unit: def initialize_state() file: models/prpr_constant.py start line: 0 end line: 0 size: 20 LOC McCabe index: 1 number of parameters: 3 id: 41 unit: def __init__() file: models/relay_constant.py start line: 0 end line: 0 size: 20 LOC McCabe index: 1 number of parameters: 2 id: 42 unit: def execute() file: vihds/call_run_xval.py start line: 0 end line: 0 size: 20 LOC McCabe index: 4 number of parameters: 2 id: 43 unit: def proc_data() file: vihds/config.py start line: 0 end line: 0 size: 20 LOC McCabe index: 10 number of parameters: 1 id: 44 unit: def __init__() file: models/degrader_constant.py start line: 0 end line: 0 size: 19 LOC McCabe index: 1 number of parameters: 2 id: 45 unit: def initialize_state() file: models/inducer_constant.py start line: 0 end line: 0 size: 19 LOC McCabe index: 1 number of parameters: 3 id: 46 unit: def __init__() file: models/relay_constant.py start line: 0 end line: 0 size: 19 LOC McCabe index: 1 number of parameters: 2 id: 47 unit: def sample() file: vihds/distributions.py start line: 0 end line: 0 size: 19 LOC McCabe index: 4 number of parameters: 4 id: 48 unit: def forward() file: vihds/encoders.py start line: 0 end line: 0 size: 19 LOC McCabe index: 7 number of parameters: 4 id: 49 unit: def load_local() file: vihds/parameters.py start line: 0 end line: 0 size: 19 LOC McCabe index: 8 number of parameters: 2 id: 50 unit: def dump() file: vihds/utils.py start line: 0 end line: 0 size: 19 LOC McCabe index: 1 number of parameters: 2 id: 51 unit: def initialize_state() file: models/auto_constant.py start line: 0 end line: 0 size: 18 LOC McCabe index: 1 number of parameters: 3 id: 52 unit: def __init__() file: models/degrader_constant.py start line: 0 end line: 0 size: 18 LOC McCabe index: 1 number of parameters: 2 id: 53 unit: def initialize_state() file: models/dr_constant.py start line: 0 end line: 0 size: 18 LOC McCabe index: 1 number of parameters: 3 id: 54 unit: def forward() file: vihds/decoders.py start line: 0 end line: 0 size: 18 LOC McCabe index: 3 number of parameters: 5 id: 55 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 18 LOC McCabe index: 2 number of parameters: 4 id: 56 unit: def build_q_unconditioned() file: vihds/encoders.py start line: 0 end line: 0 size: 18 LOC McCabe index: 5 number of parameters: 4 id: 57 unit: def build_q_conditioned() file: vihds/encoders.py start line: 0 end line: 0 size: 18 LOC McCabe index: 5 number of parameters: 6 id: 58 unit: def add() file: vihds/xval.py start line: 0 end line: 0 size: 18 LOC McCabe index: 2 number of parameters: 4 id: 59 unit: def merge_conditions() file: data/procdata.py start line: 0 end line: 0 size: 17 LOC McCabe index: 3 number of parameters: 2 id: 60 unit: def __init__() file: models/prpr_constant.py start line: 0 end line: 0 size: 17 LOC McCabe index: 4 number of parameters: 7 id: 61 unit: def forward() file: models/prpr_constant.py start line: 0 end line: 0 size: 17 LOC McCabe index: 4 number of parameters: 3 id: 62 unit: def apply_defaults_data() file: vihds/config.py start line: 0 end line: 0 size: 17 LOC McCabe index: 2 number of parameters: 1 id: 63 unit: def order_distributions() file: vihds/distributions.py start line: 0 end line: 0 size: 17 LOC McCabe index: 9 number of parameters: 1 id: 64 unit: def forward() file: models/inducer_constant.py start line: 0 end line: 0 size: 16 LOC McCabe index: 4 number of parameters: 3 id: 65 unit: def _tidy_args() file: vihds/config.py start line: 0 end line: 0 size: 16 LOC McCabe index: 4 number of parameters: 1 id: 66 unit: def pretty_print() file: vihds/parameters.py start line: 0 end line: 0 size: 16 LOC McCabe index: 6 number of parameters: 1 id: 67 unit: def load_global() file: vihds/parameters.py start line: 0 end line: 0 size: 16 LOC McCabe index: 7 number of parameters: 2 id: 68 unit: def main() file: vihds/run_xval.py start line: 0 end line: 0 size: 16 LOC McCabe index: 4 number of parameters: 0 id: 69 unit: def load() file: vihds/utils.py start line: 0 end line: 0 size: 16 LOC McCabe index: 1 number of parameters: 2 id: 70 unit: def forward() file: models/auto_constant.py start line: 0 end line: 0 size: 15 LOC McCabe index: 4 number of parameters: 3 id: 71 unit: def create_inference_graph() file: vihds/inference_graph.py start line: 0 end line: 0 size: 15 LOC McCabe index: 4 number of parameters: 2 id: 72 unit: def finalize() file: vihds/xval.py start line: 0 end line: 0 size: 15 LOC McCabe index: 4 number of parameters: 1 id: 73 unit: def forward() file: vihds/encoders.py start line: 0 end line: 0 size: 14 LOC McCabe index: 3 number of parameters: 1 id: 74 unit: def setStage() file: vihds/inference_graph.py start line: 0 end line: 0 size: 14 LOC McCabe index: 6 number of parameters: 1 id: 75 unit: def simulate() file: vihds/ode.py start line: 0 end line: 0 size: 14 LOC McCabe index: 5 number of parameters: 7 id: 76 unit: def load_constant() file: vihds/parameters.py start line: 0 end line: 0 size: 14 LOC McCabe index: 5 number of parameters: 2 id: 77 unit: def _plot_weighted_theta_figure() file: vihds/training.py start line: 0 end line: 0 size: 14 LOC McCabe index: 2 number of parameters: 6 id: 78 unit: def __init__() file: models/auto_constant.py start line: 0 end line: 0 size: 13 LOC McCabe index: 4 number of parameters: 7 id: 79 unit: def assign_free_and_constrained() file: vihds/distributions.py start line: 0 end line: 0 size: 13 LOC McCabe index: 1 number of parameters: 6 id: 80 unit: def __init__() file: vihds/distributions.py start line: 0 end line: 0 size: 13 LOC McCabe index: 2 number of parameters: 6 id: 81 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 13 LOC McCabe index: 2 number of parameters: 6 id: 82 unit: def device_conditioner() file: vihds/ode.py start line: 0 end line: 0 size: 13 LOC McCabe index: 2 number of parameters: 6 id: 83 unit: def __init__() file: vihds/ode.py start line: 0 end line: 0 size: 13 LOC McCabe index: 1 number of parameters: 5 id: 84 unit: def load_shared_distributions() file: vihds/parameters.py start line: 0 end line: 0 size: 13 LOC McCabe index: 4 number of parameters: 1 id: 85 unit: def collate_merged() file: vihds/training.py start line: 0 end line: 0 size: 13 LOC McCabe index: 5 number of parameters: 3 id: 86 unit: def _plot_variance() file: vihds/training.py start line: 0 end line: 0 size: 13 LOC McCabe index: 1 number of parameters: 5 id: 87 unit: def _run_batch() file: vihds/training.py start line: 0 end line: 0 size: 13 LOC McCabe index: 2 number of parameters: 4 id: 88 unit: def gen_reaction_equations() file: models/debug.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 5 id: 89 unit: def get_cassettes() file: vihds/datasets.py start line: 0 end line: 0 size: 12 LOC McCabe index: 5 number of parameters: 2 id: 90 unit: def scale_data() file: vihds/datasets.py start line: 0 end line: 0 size: 12 LOC McCabe index: 6 number of parameters: 2 id: 91 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 12 LOC McCabe index: 2 number of parameters: 6 id: 92 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 12 LOC McCabe index: 4 number of parameters: 4 id: 93 unit: def gen_treatment_str() file: vihds/plotting.py start line: 0 end line: 0 size: 12 LOC McCabe index: 4 number of parameters: 3 id: 94 unit: def forward() file: vihds/precisions.py start line: 0 end line: 0 size: 12 LOC McCabe index: 2 number of parameters: 6 id: 95 unit: def run_on_split() file: vihds/run_xval.py start line: 0 end line: 0 size: 12 LOC McCabe index: 3 number of parameters: 3 id: 96 unit: def _update_summaries() file: vihds/training.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 0 id: 97 unit: def _plot_prediction_summary() file: vihds/training.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 5 id: 98 unit: def _plot_species() file: vihds/training.py start line: 0 end line: 0 size: 12 LOC McCabe index: 1 number of parameters: 5 id: 99 unit: def arrange_by_stage() file: vihds/inference_graph.py start line: 0 end line: 0 size: 11 LOC McCabe index: 3 number of parameters: 1 id: 100 unit: def plot_weighted_theta() file: vihds/plotting.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 101 unit: def create_parser() file: vihds/run_inference_graph.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 0 id: 102 unit: def modified_euler_while() file: vihds/solvers.py start line: 0 end line: 0 size: 11 LOC McCabe index: 2 number of parameters: 3 id: 103 unit: def stat_cuda() file: vihds/utils.py start line: 0 end line: 0 size: 11 LOC McCabe index: 1 number of parameters: 1 id: 104 unit: def merge_observations() file: vihds/datasets.py start line: 0 end line: 0 size: 10 LOC McCabe index: 3 number of parameters: 2 id: 105 unit: def clip() file: vihds/distributions.py start line: 0 end line: 0 size: 10 LOC McCabe index: 4 number of parameters: 4 id: 106 unit: def assign_free_and_constrained() file: vihds/distributions.py start line: 0 end line: 0 size: 10 LOC McCabe index: 7 number of parameters: 4 id: 107 unit: def assign_free_and_constrained() file: vihds/distributions.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 7 id: 108 unit: def __init__() file: vihds/ode.py start line: 0 end line: 0 size: 10 LOC McCabe index: 1 number of parameters: 2 id: 109 unit: def main() file: vihds/run_inference_graph.py start line: 0 end line: 0 size: 10 LOC McCabe index: 2 number of parameters: 0 id: 110 unit: def process_condition() file: data/procdata.py start line: 0 end line: 0 size: 9 LOC McCabe index: 3 number of parameters: 1 id: 111 unit: def observe() file: models/auto_constant.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 112 unit: def observe() file: models/debug.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 113 unit: def condition_theta() file: models/dr_blackbox.py start line: 0 end line: 0 size: 9 LOC McCabe index: 2 number of parameters: 5 id: 114 unit: def observe() file: models/dr_blackbox.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 115 unit: def observe() file: models/inducer_constant.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 116 unit: def _preprocess() file: vihds/datasets.py start line: 0 end line: 0 size: 9 LOC McCabe index: 4 number of parameters: 5 id: 117 unit: def __getitem__() file: vihds/datasets.py start line: 0 end line: 0 size: 9 LOC McCabe index: 2 number of parameters: 2 id: 118 unit: def observe() file: vihds/ode.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 3 id: 119 unit: def variable_summaries() file: vihds/utils.py start line: 0 end line: 0 size: 9 LOC McCabe index: 2 number of parameters: 5 id: 120 unit: def __init__() file: vihds/utils.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 121 unit: def __init__() file: vihds/utils.py start line: 0 end line: 0 size: 9 LOC McCabe index: 1 number of parameters: 1 id: 122 unit: def build_model() file: vihds/vae.py start line: 0 end line: 0 size: 9 LOC McCabe index: 2 number of parameters: 4 id: 123 unit: def __init__() file: vihds/config.py start line: 0 end line: 0 size: 8 LOC McCabe index: 2 number of parameters: 4 id: 124 unit: def __init__() file: vihds/decoders.py start line: 0 end line: 0 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 125 unit: def log_prob() file: vihds/distributions.py start line: 0 end line: 0 size: 8 LOC McCabe index: 5 number of parameters: 3 id: 126 unit: def fill_slots() file: vihds/distributions.py start line: 0 end line: 0 size: 8 LOC McCabe index: 3 number of parameters: 3 id: 127 unit: def log_prob() file: vihds/distributions.py start line: 0 end line: 0 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 128 unit: def constrain_parameter() file: vihds/encoders.py start line: 0 end line: 0 size: 8 LOC McCabe index: 3 number of parameters: 2 id: 129 unit: def forward() file: vihds/encoders.py start line: 0 end line: 0 size: 8 LOC McCabe index: 2 number of parameters: 1 id: 130 unit: def set_up_q() file: vihds/encoders.py start line: 0 end line: 0 size: 8 LOC McCabe index: 1 number of parameters: 2 id: 131 unit: def __str__() file: vihds/parameters.py start line: 0 end line: 0 size: 8 LOC McCabe index: 4 number of parameters: 1 id: 132 unit: def add_from_spec() file: vihds/parameters.py start line: 0 end line: 0 size: 8 LOC McCabe index: 2 number of parameters: 4 id: 133 unit: def modified_euler_integrate() file: vihds/solvers.py start line: 0 end line: 0 size: 8 LOC McCabe index: 2 number of parameters: 3 id: 134 unit: def extract_signal() file: data/procdata.py start line: 0 end line: 0 size: 7 LOC McCabe index: 3 number of parameters: 1 id: 135 unit: def merge_list() file: data/procdata.py start line: 0 end line: 0 size: 7 LOC McCabe index: 3 number of parameters: 2 id: 136 unit: def __init__() file: models/auto_constant.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 137 unit: def initialize_state() file: models/debug.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 138 unit: def gen_reaction_equations() file: models/degrader_constant.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 6 id: 139 unit: def initialize_state() file: models/dr_blackbox.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 3 id: 140 unit: def __init__() file: models/dr_constant.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 141 unit: def condition_theta() file: models/dr_constant.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 5 id: 142 unit: def __init__() file: models/inducer_constant.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 143 unit: def __init__() file: models/prpr_constant.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 144 unit: def gen_reaction_equations() file: models/relay_constant.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 6 id: 145 unit: def locate_yml() file: vihds/config.py start line: 0 end line: 0 size: 7 LOC McCabe index: 4 number of parameters: 1 id: 146 unit: def __init__() file: vihds/datasets.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 4 id: 147 unit: def attach_summaries() file: vihds/distributions.py start line: 0 end line: 0 size: 7 LOC McCabe index: 2 number of parameters: 5 id: 148 unit: def forward() file: vihds/encoders.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 2 id: 149 unit: def set_up_p() file: vihds/encoders.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 150 unit: def __init__() file: vihds/ode.py start line: 0 end line: 0 size: 7 LOC McCabe index: 2 number of parameters: 4 id: 151 unit: def __init__() file: vihds/parameters.py start line: 0 end line: 0 size: 7 LOC McCabe index: 2 number of parameters: 2 id: 152 unit: def summaries() file: vihds/precisions.py start line: 0 end line: 0 size: 7 LOC McCabe index: 4 number of parameters: 3 id: 153 unit: def forward() file: vihds/vae.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 5 id: 154 unit: def prepare() file: vihds/xval.py start line: 0 end line: 0 size: 7 LOC McCabe index: 1 number of parameters: 1 id: 155 unit: def find_conditions() file: data/procdata.py start line: 0 end line: 0 size: 6 LOC McCabe index: 6 number of parameters: 2 id: 156 unit: def initialize_state() file: models/auto_constant.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 157 unit: def __init__() file: models/auto_constant.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 158 unit: def __init__() file: models/dr_constant.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 159 unit: def initialize_state() file: models/inducer_constant.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 160 unit: def __init__() file: models/inducer_constant.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 161 unit: def initialize_state() file: models/prpr_constant.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 162 unit: def __init__() file: models/prpr_constant.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 163 unit: def main() file: vihds/call_run_xval.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 0 id: 164 unit: def get_data_directory() file: vihds/config.py start line: 0 end line: 0 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 165 unit: def get_results_directory() file: vihds/config.py start line: 0 end line: 0 size: 6 LOC McCabe index: 2 number of parameters: 0 id: 166 unit: def _unique_dir_name() file: vihds/config.py start line: 0 end line: 0 size: 6 LOC McCabe index: 4 number of parameters: 3 id: 167 unit: def create_logging_dirs() file: vihds/config.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 168 unit: def __init__() file: vihds/datasets.py start line: 0 end line: 0 size: 6 LOC McCabe index: 2 number of parameters: 3 id: 169 unit: def init_multiple_merge() file: vihds/datasets.py start line: 0 end line: 0 size: 6 LOC McCabe index: 4 number of parameters: 1 id: 170 unit: def add() file: vihds/distributions.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 171 unit: def log_prob_mat() file: vihds/distributions.py start line: 0 end line: 0 size: 6 LOC McCabe index: 3 number of parameters: 3 id: 172 unit: def concat() file: vihds/encoders.py start line: 0 end line: 0 size: 6 LOC McCabe index: 3 number of parameters: 2 id: 173 unit: def __init__() file: vihds/inference_graph.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 174 unit: def summaries() file: vihds/ode.py start line: 0 end line: 0 size: 6 LOC McCabe index: 3 number of parameters: 3 id: 175 unit: def get_parameter_counts() file: vihds/parameters.py start line: 0 end line: 0 size: 6 LOC McCabe index: 5 number of parameters: 1 id: 176 unit: def expand() file: vihds/precisions.py start line: 0 end line: 0 size: 6 LOC McCabe index: 2 number of parameters: 4 id: 177 unit: def pooled_prec() file: vihds/run_inference_graph.py start line: 0 end line: 0 size: 6 LOC McCabe index: 2 number of parameters: 1 id: 178 unit: def modified_euler_while_body() file: vihds/solvers.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 179 unit: def log_prob_observations() file: vihds/training.py start line: 0 end line: 0 size: 6 LOC McCabe index: 4 number of parameters: 5 id: 180 unit: def batch_to_device() file: vihds/training.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 3 id: 181 unit: def default_get_value() file: vihds/utils.py start line: 0 end line: 0 size: 6 LOC McCabe index: 3 number of parameters: 4 id: 182 unit: def __init__() file: vihds/vae.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 4 id: 183 unit: def mark_completed() file: vihds/xval.py start line: 0 end line: 0 size: 6 LOC McCabe index: 1 number of parameters: 2 id: 184 unit: def expand_conditions() file: data/procdata.py start line: 0 end line: 0 size: 5 LOC McCabe index: 3 number of parameters: 2 id: 185 unit: def gen_reaction_equations() file: models/degrader_constant.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 186 unit: def gen_reaction_equations() file: models/dr_blackbox.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 187 unit: def gen_reaction_equations() file: models/dr_constant.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 188 unit: def gen_reaction_equations() file: models/dr_constant.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 189 unit: def gen_reaction_equations() file: models/inducer_constant.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 190 unit: def gen_reaction_equations() file: models/relay_constant.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 6 id: 191 unit: def _unique_dir_name() file: vihds/config.py start line: 0 end line: 0 size: 5 LOC McCabe index: 3 number of parameters: 2 id: 192 unit: def onehot() file: vihds/datasets.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 2 id: 193 unit: def __str__() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 194 unit: def add_distribution() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 4 id: 195 unit: def get_tensors() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 196 unit: def get_tensor_names() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 197 unit: def pretty_print() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 198 unit: def __init__() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 199 unit: def __str__() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 200 unit: def clip() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 201 unit: def __str__() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 202 unit: def clip() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 203 unit: def __str__() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 204 unit: def __str__() file: vihds/distributions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 205 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 206 unit: def diagnostic_printout() file: vihds/encoders.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 207 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 3 id: 208 unit: def __init__() file: vihds/inference_graph.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 5 id: 209 unit: def forward() file: vihds/ode.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 3 id: 210 unit: def expand() file: vihds/precisions.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 4 id: 211 unit: def save_propagatedParameters() file: vihds/run_inference_graph.py start line: 0 end line: 0 size: 5 LOC McCabe index: 1 number of parameters: 2 id: 212 unit: def is_empty() file: vihds/utils.py start line: 0 end line: 0 size: 5 LOC McCabe index: 2 number of parameters: 1 id: 213 unit: def find_nearest() file: data/procdata.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 214 unit: def __init__() file: models/debug.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 215 unit: def summaries() file: models/degrader_constant.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 216 unit: def forward() file: models/dr_blackbox.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 217 unit: def summaries() file: models/dr_constant.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 218 unit: def summaries() file: models/relay_constant.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 219 unit: def find_nearest() file: vihds/datasets.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 220 unit: def __init__() file: vihds/distributions.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 221 unit: def __init__() file: vihds/distributions.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 222 unit: def assign_free_and_constrained() file: vihds/distributions.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 223 unit: def fill_slots() file: vihds/distributions.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 3 id: 224 unit: def sample() file: vihds/distributions.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 3 id: 225 unit: def standard_sample() file: vihds/distributions.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 3 id: 226 unit: def forward() file: vihds/ode.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 227 unit: def get_shared() file: vihds/parameters.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 228 unit: def get_global() file: vihds/parameters.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 229 unit: def get_global_cond() file: vihds/parameters.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 230 unit: def get_local() file: vihds/parameters.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 231 unit: def get_constant() file: vihds/parameters.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 232 unit: def __init__() file: vihds/precisions.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 2 id: 233 unit: def loadR() file: vihds/readwrite.py start line: 0 end line: 0 size: 4 LOC McCabe index: 1 number of parameters: 1 id: 234 unit: def make_writer() file: vihds/xval.py start line: 0 end line: 0 size: 4 LOC McCabe index: 2 number of parameters: 2 id: 235 unit: def gen_reaction_equations() file: models/auto_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 236 unit: def gen_reaction_equations() file: models/auto_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 237 unit: def summaries() file: models/degrader_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 238 unit: def summaries() file: models/dr_blackbox.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 239 unit: def summaries() file: models/dr_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 240 unit: def __init__() file: models/dr_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 241 unit: def __init__() file: models/dr_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 242 unit: def gen_reaction_equations() file: models/inducer_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 6 id: 243 unit: def gen_reaction_equations() file: models/prpr_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 244 unit: def gen_reaction_equations() file: models/prpr_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 5 id: 245 unit: def summaries() file: models/relay_constant.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 246 unit: def init_single() file: vihds/datasets.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 247 unit: def attach_summaries() file: vihds/distributions.py start line: 0 end line: 0 size: 3 LOC McCabe index: 2 number of parameters: 4 id: 248 unit: def add_noise() file: vihds/distributions.py start line: 0 end line: 0 size: 3 LOC McCabe index: 2 number of parameters: 2 id: 249 unit: def __init__() file: vihds/distributions.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 250 unit: def sample() file: vihds/distributions.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 251 unit: def log_prob() file: vihds/distributions.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 252 unit: def forward() file: vihds/encoders.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 2 id: 253 unit: def __str__() file: vihds/parameters.py start line: 0 end line: 0 size: 3 LOC McCabe index: 2 number of parameters: 1 id: 254 unit: def add_time_dimension() file: vihds/precisions.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 255 unit: def writeR() file: vihds/readwrite.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 256 unit: def log_prob_laplace() file: vihds/training.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 257 unit: def log_prob_gaussian() file: vihds/training.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 258 unit: def sample_u() file: vihds/vae.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 4 id: 259 unit: def save_figs() file: vihds/xval.py start line: 0 end line: 0 size: 3 LOC McCabe index: 1 number of parameters: 3 id: 260 unit: def merge() file: data/procdata.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 261 unit: def summaries() file: models/auto_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 262 unit: def summaries() file: models/auto_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 263 unit: def __init__() file: models/degrader_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 264 unit: def __init__() file: models/dr_blackbox.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 265 unit: def __init__() file: models/inducer_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 266 unit: def summaries() file: models/inducer_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 267 unit: def summaries() file: models/inducer_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 268 unit: def summaries() file: models/prpr_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 269 unit: def summaries() file: models/prpr_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 270 unit: def __init__() file: models/relay_constant.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 271 unit: def depth() file: vihds/config.py start line: 0 end line: 0 size: 2 LOC McCabe index: 3 number of parameters: 1 id: 272 unit: def depth() file: vihds/datasets.py start line: 0 end line: 0 size: 2 LOC McCabe index: 3 number of parameters: 1 id: 273 unit: def __len__() file: vihds/datasets.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 274 unit: def erf_approx() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 275 unit: def erfinv_approx() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 276 unit: def get_n_batch() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 277 unit: def get_n_samples() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 278 unit: def get_tensors() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 2 number of parameters: 1 id: 279 unit: def get_theta_names() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 280 unit: def __str__() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 281 unit: def slots_are_pending() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 282 unit: def clip() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 283 unit: def get_tensors() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 284 unit: def log_prob() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 285 unit: def sample() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 286 unit: def get_tensor_names() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 287 unit: def attach_summaries() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 5 id: 288 unit: def sample() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 289 unit: def log_prob() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 290 unit: def get_tensors() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 291 unit: def attach_summaries() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 5 id: 292 unit: def get_tensor_names() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 293 unit: def __init__() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 294 unit: def get_tensors() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 295 unit: def get_tensor_names() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 296 unit: def __init__() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 297 unit: def sample() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 298 unit: def log_prob() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 299 unit: def Phi() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 300 unit: def PhiInverse() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 301 unit: def get_tensors() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 302 unit: def get_tensor_names() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 303 unit: def sample() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 304 unit: def log_prob() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 305 unit: def std_normal_2_uniform() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 306 unit: def PhiInverse() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 307 unit: def get_tensors() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 308 unit: def get_tensor_names() file: vihds/distributions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 309 unit: def from_list() file: vihds/encoders.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 310 unit: def to_list() file: vihds/encoders.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 311 unit: def sum() file: vihds/encoders.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 312 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 313 unit: def forward() file: vihds/encoders.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 314 unit: def __init__() file: vihds/encoders.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 315 unit: def addIncomingEdge() file: vihds/inference_graph.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 316 unit: def addOutgoingEdge() file: vihds/inference_graph.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 317 unit: def setStage() file: vihds/inference_graph.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 318 unit: def power() file: vihds/ode.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 319 unit: def __init__() file: vihds/ode.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 5 id: 320 unit: def forward() file: vihds/ode.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 321 unit: def gen_reaction_equations() file: vihds/ode.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 5 id: 322 unit: def condition_theta() file: vihds/ode.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 5 id: 323 unit: def initialize_state() file: vihds/ode.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 324 unit: def expand_precisions() file: vihds/ode.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 4 id: 325 unit: def __init__() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 326 unit: def get_parameter_counts() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1 id: 327 unit: def add_from_existing() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 328 unit: def add_shared() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 329 unit: def add_global() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 330 unit: def add_global_cond() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 331 unit: def add_local() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 332 unit: def add_constant() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 2 id: 333 unit: def is_shared() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 2 number of parameters: 2 id: 334 unit: def is_global() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 2 number of parameters: 2 id: 335 unit: def is_global_cond() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 2 number of parameters: 2 id: 336 unit: def is_local() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 2 number of parameters: 2 id: 337 unit: def is_constant() file: vihds/parameters.py start line: 0 end line: 0 size: 2 LOC McCabe index: 2 number of parameters: 2 id: 338 unit: def plot_prediction_summary() file: vihds/plotting.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 339 unit: def species_summary() file: vihds/plotting.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 340 unit: def summaries() file: vihds/precisions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 3 id: 341 unit: def __init__() file: vihds/precisions.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 342 unit: def cost() file: vihds/training.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 343 unit: def init() file: vihds/utils.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 0 id: 344 unit: def close_writer() file: vihds/xval.py start line: 0 end line: 0 size: 2 LOC McCabe index: 1 number of parameters: 1