snakemake/profiles/local-container/config.yaml

verbose: false
use-conda: true
resources: gpu=8
cores: all
cache: false
reason: true
use-singularity: true
singularity-args: "--bind /data,/usr/local/cuda,/usr/lib/x86_64-linux-gnu:/cudnn --nv"
config:
  - deps=true
  - root=/data
  - cuda=/usr/local/cuda
  - cudnn=/cudnn
  - workspace=12000
  - numgpus=8
  - mariancmake=""
  # (optional) override available GPU ids, example gpus=0 2 5 6
  - gpus=""