GoogleCloudPlatform / vertex-ai-alphafold-inference-pipeline
File Change Frequency

File change frequency (churn) shows the distribution of file updates (days with at least one commit).

Overview
File Change Frequency Overall
  • There are 59 files with 6,050 lines of code.
    • 0 files changed more than 100 times (0 lines of code)
    • 0 files changed 51-100 times (0 lines of code)
    • 0 files changed 21-50 times (0 lines of code)
    • 15 files changed 6-20 times (2,940 lines of code)
    • 44 files changed 1-5 times (3,110 lines of code)
0% | 0% | 0% | 48% | 51%
Legend:
101+
51-100
21-50
6-20
1-5

explore: grouped by folders | grouped by update frequency | data
Contributors Count Frequency Overall
  • There are 59 files with 6,050 lines of code.
    • 0 files changed by more than 25 contributors (0 lines of code)
    • 1 file changed by 11-25 contributors (404 lines of code)
    • 8 files changed by 6-10 contributors (1,465 lines of code)
    • 45 files changed by 2-5 contributors (3,351 lines of code)
    • 5 files changed by 1 contributor (830 lines of code)
0% | 6% | 24% | 55% | 13%
Legend:
26+
11-25
6-10
2-5
1

explore: grouped by folders | grouped by contributors count | data
File Change Frequency per File Extension
py, tf, tsx, json, yaml, ts, dockerfile, txt, ipynb, gitignore, dockerignore, md, tfvars, html, css, cjs, xml
File Change Frequency per Extension
The number of recorded file updates
101+
51-100
21-50
6-20
1-5
ipynb0% | 0% | 0% | 100% | 0%
py0% | 0% | 0% | 52% | 47%
tf0% | 0% | 0% | 27% | 72%
tsx0% | 0% | 0% | 0% | 100%
ts0% | 0% | 0% | 0% | 100%
css0% | 0% | 0% | 0% | 100%
tfvars0% | 0% | 0% | 0% | 100%
html0% | 0% | 0% | 0% | 100%
yaml0% | 0% | 0% | 0% | 100%
File Change Frequency per Logical Decomposition
primary
primary (file change frequency)
The number of recorded file updates
101+
51-100
21-50
6-20
1-5
ROOT0% | 0% | 0% | 100% | 0%
src0% | 0% | 0% | 35% | 64%
env-setup-portal0% | 0% | 0% | 54% | 45%
env-setup0% | 0% | 0% | 5% | 94%
Most Frequently Changed Files (Top 50)

See data for all files...

File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
404 - 2022-09-27 2025-02-26 20 13 leiterenato@gmail.com laurent.grangeau@gmail.com
config.py
in src
 32 - 2022-09-17 2024-02-06 15 10 jarokaz@no-reply.com 63188512+yudyhendry@users.n...
108 1 2022-06-13 2024-03-12 12 8 277946+leiterenato@users.no... yudyhendry@google.com
85 1 2022-09-17 2024-03-12 11 8 jarokaz@no-reply.com yudyhendry@google.com
main.tf
in env-setup-portal
 170 - 2023-10-23 2024-03-27 11 3 yudyhendry@google.com chmstimoteo@gmail.com
predict_relax.py
in src/components
 53 1 2022-09-17 2024-03-12 9 7 jarokaz@no-reply.com yudyhendry@google.com
173 1 2022-06-13 2024-03-12 8 7 277946+leiterenato@users.no... yudyhendry@google.com
main.tf
in env-setup
 26 - 2023-07-11 2025-03-19 7 5 ctimoteo@google.com chmstimoteo@gmail.com
relax_protein.py
in src/components
 43 1 2022-06-06 2024-03-12 6 6 leiterenato@gmail.com yudyhendry@google.com
aggregate_features.py
in src/components
 43 1 2022-09-17 2024-03-12 6 5 jarokaz@no-reply.com yudyhendry@google.com
model_predict.py
in src/components
 48 1 2023-09-02 2024-03-12 6 5 cpooley@google.com yudyhendry@google.com
main.py
in src/backend
 320 16 2024-01-12 2024-06-21 6 3 yudyhendry@google.com chmstimoteo@gmail.com
401 - 2023-07-26 2024-11-18 6 7 ctimoteo@google.com trainormg@users.noreply.git...
alphafold_utils.py
in src/components
 464 13 2022-06-13 2022-12-20 6 4 jarek.r.kaz@gmail.com 277946+leiterenato@users.no...
570 - 2022-09-27 2024-03-12 6 6 leiterenato@gmail.com yudyhendry@google.com
gcs_bucket.tf
in env-setup
 11 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
vertex-notebook.tf
in env-setup
 23 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
26 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
network.tf
in env-setup
 30 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
34 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
38 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
variables.tf
in env-setup-portal
 55 - 2023-10-23 2024-02-06 5 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
data_pipeline.py
in src/components
 74 1 2022-12-15 2024-03-12 5 5 leiterenato@gmail.com yudyhendry@google.com
variables.tf
in env-setup
 121 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
NewJob.tsx
in src/frontend/src
 489 - 2024-01-12 2024-06-21 5 3 yudyhendry@google.com chmstimoteo@gmail.com
fasta_utils.py
in src/utils
 24 1 2022-09-27 2024-02-06 4 4 leiterenato@gmail.com 63188512+yudyhendry@users.n...
pipeline_images.tf
in env-setup
 49 - 2023-10-30 2024-02-06 4 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
configure_run.py
in src/components
 64 1 2022-06-06 2024-03-12 4 4 leiterenato@gmail.com yudyhendry@google.com
__init__.py
in src/components
 9 - 2022-09-17 2022-09-26 3 2 jarokaz@no-reply.com 277946+leiterenato@users.no...
index.html
in src/backend/templates
 16 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
filestore.tf
in env-setup
 21 - 2023-07-11 2023-08-04 3 2 ctimoteo@google.com 277946+leiterenato@users.no...
jackhmmer.py
in src/components
 38 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
hhblits.py
in src/components
 40 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
hmmsearch.py
in src/components
 50 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
hhsearch.py
in src/components
 54 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
index.css
in src/frontend/src
 57 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
SimpleDialog.tsx
in src/frontend/src/components
 72 1 2024-01-30 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
ResponsiveAppBar.tsx
in src/frontend/src/components
 74 1 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
CommonFunctions.ts
in src/frontend/src/common
 117 6 2024-01-12 2024-06-21 3 3 yudyhendry@google.com chmstimoteo@gmail.com
JobResults.tsx
in src/frontend/src
 227 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com yudyhendry@google.com
output.tf
in env-setup-portal
 3 - 2023-10-23 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
settings.py
in src/backend
 3 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
main.tsx
in src/frontend/src
 4 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
vite.config.ts
in src/frontend
 5 1 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
index.html
in src/frontend
 13 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
17 - 2023-07-24 2023-07-26 2 1 ctimoteo@google.com ctimoteo@google.com
outputs.tf
in env-setup
 18 - 2023-07-11 2023-08-04 2 2 ctimoteo@google.com 277946+leiterenato@users.no...
terraform-sample.tfvars
in env-setup-portal
 29 - 2024-02-01 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
StringSet.ts
in src/frontend/src/common
 44 8 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
run_utils.py
in src/utils
 75 4 2022-09-27 2022-09-28 2 2 leiterenato@gmail.com jarek.r.kaz@gmail.com
Files With Most Contributors (Top 50)
Based on the number of unique email addresses found in commits.

See data for all files...

File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
404 - 2022-09-27 2025-02-26 20 13 leiterenato@gmail.com laurent.grangeau@gmail.com
config.py
in src
 32 - 2022-09-17 2024-02-06 15 10 jarokaz@no-reply.com 63188512+yudyhendry@users.n...
108 1 2022-06-13 2024-03-12 12 8 277946+leiterenato@users.no... yudyhendry@google.com
85 1 2022-09-17 2024-03-12 11 8 jarokaz@no-reply.com yudyhendry@google.com
predict_relax.py
in src/components
 53 1 2022-09-17 2024-03-12 9 7 jarokaz@no-reply.com yudyhendry@google.com
173 1 2022-06-13 2024-03-12 8 7 277946+leiterenato@users.no... yudyhendry@google.com
401 - 2023-07-26 2024-11-18 6 7 ctimoteo@google.com trainormg@users.noreply.git...
relax_protein.py
in src/components
 43 1 2022-06-06 2024-03-12 6 6 leiterenato@gmail.com yudyhendry@google.com
570 - 2022-09-27 2024-03-12 6 6 leiterenato@gmail.com yudyhendry@google.com
main.tf
in env-setup
 26 - 2023-07-11 2025-03-19 7 5 ctimoteo@google.com chmstimoteo@gmail.com
aggregate_features.py
in src/components
 43 1 2022-09-17 2024-03-12 6 5 jarokaz@no-reply.com yudyhendry@google.com
model_predict.py
in src/components
 48 1 2023-09-02 2024-03-12 6 5 cpooley@google.com yudyhendry@google.com
data_pipeline.py
in src/components
 74 1 2022-12-15 2024-03-12 5 5 leiterenato@gmail.com yudyhendry@google.com
alphafold_utils.py
in src/components
 464 13 2022-06-13 2022-12-20 6 4 jarek.r.kaz@gmail.com 277946+leiterenato@users.no...
26 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
38 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
network.tf
in env-setup
 30 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
vertex-notebook.tf
in env-setup
 23 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
variables.tf
in env-setup
 121 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
34 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
gcs_bucket.tf
in env-setup
 11 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
configure_run.py
in src/components
 64 1 2022-06-06 2024-03-12 4 4 leiterenato@gmail.com yudyhendry@google.com
fasta_utils.py
in src/utils
 24 1 2022-09-27 2024-02-06 4 4 leiterenato@gmail.com 63188512+yudyhendry@users.n...
main.tf
in env-setup-portal
 170 - 2023-10-23 2024-03-27 11 3 yudyhendry@google.com chmstimoteo@gmail.com
main.py
in src/backend
 320 16 2024-01-12 2024-06-21 6 3 yudyhendry@google.com chmstimoteo@gmail.com
NewJob.tsx
in src/frontend/src
 489 - 2024-01-12 2024-06-21 5 3 yudyhendry@google.com chmstimoteo@gmail.com
hhsearch.py
in src/components
 54 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
hhblits.py
in src/components
 40 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
hmmsearch.py
in src/components
 50 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
jackhmmer.py
in src/components
 38 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
CommonFunctions.ts
in src/frontend/src/common
 117 6 2024-01-12 2024-06-21 3 3 yudyhendry@google.com chmstimoteo@gmail.com
variables.tf
in env-setup-portal
 55 - 2023-10-23 2024-02-06 5 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
pipeline_images.tf
in env-setup
 49 - 2023-10-30 2024-02-06 4 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
filestore.tf
in env-setup
 21 - 2023-07-11 2023-08-04 3 2 ctimoteo@google.com 277946+leiterenato@users.no...
__init__.py
in src/components
 9 - 2022-09-17 2022-09-26 3 2 jarokaz@no-reply.com 277946+leiterenato@users.no...
index.css
in src/frontend/src
 57 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
SimpleDialog.tsx
in src/frontend/src/components
 72 1 2024-01-30 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
ResponsiveAppBar.tsx
in src/frontend/src/components
 74 1 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
JobResults.tsx
in src/frontend/src
 227 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com yudyhendry@google.com
index.html
in src/backend/templates
 16 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
outputs.tf
in env-setup
 18 - 2023-07-11 2023-08-04 2 2 ctimoteo@google.com 277946+leiterenato@users.no...
compile_utils.py
in src/utils
 77 3 2022-09-27 2022-09-28 2 2 leiterenato@gmail.com jarek.r.kaz@gmail.com
run_utils.py
in src/utils
 75 4 2022-09-27 2022-09-28 2 2 leiterenato@gmail.com jarek.r.kaz@gmail.com
index.html
in src/frontend
 13 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
GoogleSignInButton.tsx
in src/frontend/src/components
 81 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
App.tsx
in src/frontend/src
 107 2 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
StringSet.ts
in src/frontend/src/common
 44 8 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
main.tsx
in src/frontend/src
 4 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
vite.config.ts
in src/frontend
 5 1 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
settings.py
in src/backend
 3 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
Files With Least Contributors (Top 50)
Based on the number of unique email addresses found in commits.

See data for all files...

File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
parsers.py
in src/analysis
 383 20
notebook_utils.py
in src/analysis
 135 6
version.py
in src/components
 1 -
__init__.py
in src/pipelines
 1 -
1 -
residue_constants.py
in src/analysis
 678 7 2024-11-18 2024-11-18 1 1 trainormg@users.noreply.git... trainormg@users.noreply.git...
versions.tf
in env-setup
 53 - 2025-02-26 2025-02-26 1 1 chmstimoteo@gmail.com chmstimoteo@gmail.com
versions.tf
in env-setup-portal
 53 - 2025-02-26 2025-02-26 1 1 chmstimoteo@gmail.com chmstimoteo@gmail.com
utils.py
in src/analysis
 29 1 2022-12-07 2022-12-07 1 1 leiterenato@gmail.com leiterenato@gmail.com
17 - 2023-07-24 2023-07-26 2 1 ctimoteo@google.com ctimoteo@google.com
JobResults.tsx
in src/frontend/src
 227 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com yudyhendry@google.com
App.tsx
in src/frontend/src
 107 2 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
GoogleSignInButton.tsx
in src/frontend/src/components
 81 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
compile_utils.py
in src/utils
 77 3 2022-09-27 2022-09-28 2 2 leiterenato@gmail.com jarek.r.kaz@gmail.com
run_utils.py
in src/utils
 75 4 2022-09-27 2022-09-28 2 2 leiterenato@gmail.com jarek.r.kaz@gmail.com
ResponsiveAppBar.tsx
in src/frontend/src/components
 74 1 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
SimpleDialog.tsx
in src/frontend/src/components
 72 1 2024-01-30 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
index.css
in src/frontend/src
 57 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
variables.tf
in env-setup-portal
 55 - 2023-10-23 2024-02-06 5 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
pipeline_images.tf
in env-setup
 49 - 2023-10-30 2024-02-06 4 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
StringSet.ts
in src/frontend/src/common
 44 8 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
terraform-sample.tfvars
in env-setup-portal
 29 - 2024-02-01 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
filestore.tf
in env-setup
 21 - 2023-07-11 2023-08-04 3 2 ctimoteo@google.com 277946+leiterenato@users.no...
outputs.tf
in env-setup
 18 - 2023-07-11 2023-08-04 2 2 ctimoteo@google.com 277946+leiterenato@users.no...
index.html
in src/backend/templates
 16 - 2024-01-12 2024-02-06 3 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
index.html
in src/frontend
 13 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
__init__.py
in src/components
 9 - 2022-09-17 2022-09-26 3 2 jarokaz@no-reply.com 277946+leiterenato@users.no...
setup.py
in src
 7 - 2024-03-12 2024-03-12 1 2 chmstimoteo@gmail.com yudyhendry@google.com
vite.config.ts
in src/frontend
 5 1 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
main.tsx
in src/frontend/src
 4 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
settings.py
in src/backend
 3 - 2024-01-12 2024-02-06 2 2 yudyhendry@google.com yudyhendry@google.com
output.tf
in env-setup-portal
 3 - 2023-10-23 2024-02-06 2 2 yudyhendry@google.com 63188512+yudyhendry@users.n...
__init__.py
in src/utils
 1 - 2024-03-12 2024-03-12 1 2 chmstimoteo@gmail.com yudyhendry@google.com
NewJob.tsx
in src/frontend/src
 489 - 2024-01-12 2024-06-21 5 3 yudyhendry@google.com chmstimoteo@gmail.com
main.py
in src/backend
 320 16 2024-01-12 2024-06-21 6 3 yudyhendry@google.com chmstimoteo@gmail.com
main.tf
in env-setup-portal
 170 - 2023-10-23 2024-03-27 11 3 yudyhendry@google.com chmstimoteo@gmail.com
CommonFunctions.ts
in src/frontend/src/common
 117 6 2024-01-12 2024-06-21 3 3 yudyhendry@google.com chmstimoteo@gmail.com
hhsearch.py
in src/components
 54 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
hmmsearch.py
in src/components
 50 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
hhblits.py
in src/components
 40 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
jackhmmer.py
in src/components
 38 1 2024-01-12 2024-03-12 3 3 yudyhendry@google.com yudyhendry@google.com
alphafold_utils.py
in src/components
 464 13 2022-06-13 2022-12-20 6 4 jarek.r.kaz@gmail.com 277946+leiterenato@users.no...
variables.tf
in env-setup
 121 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
configure_run.py
in src/components
 64 1 2022-06-06 2024-03-12 4 4 leiterenato@gmail.com yudyhendry@google.com
38 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
34 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
network.tf
in env-setup
 30 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
26 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
fasta_utils.py
in src/utils
 24 1 2022-09-27 2024-02-06 4 4 leiterenato@gmail.com 63188512+yudyhendry@users.n...
vertex-notebook.tf
in env-setup
 23 - 2023-07-11 2024-02-06 5 4 ctimoteo@google.com 63188512+yudyhendry@users.n...
Correlations

File Size vs. Number of Changes: 59 points

env-setup/main.tf x: 26 lines of code y: 7 # changes env-setup/versions.tf x: 53 lines of code y: 1 # changes 1-alphafold-quick-start.ipynb x: 404 lines of code y: 20 # changes 1.1-alphafold-quick-start-multimer.ipynb x: 401 lines of code y: 6 # changes src/analysis/residue_constants.py x: 678 lines of code y: 1 # changes src/backend/main.py x: 320 lines of code y: 6 # changes src/frontend/src/NewJob.tsx x: 489 lines of code y: 5 # changes src/frontend/src/common/CommonFunctions.ts x: 117 lines of code y: 3 # changes env-setup-portal/main.tf x: 170 lines of code y: 11 # changes 2-alphafold-metadata-exploration.ipynb x: 570 lines of code y: 6 # changes src/components/aggregate_features.py x: 43 lines of code y: 6 # changes src/components/configure_run.py x: 64 lines of code y: 4 # changes src/components/data_pipeline.py x: 74 lines of code y: 5 # changes src/components/hhblits.py x: 40 lines of code y: 3 # changes src/components/hhsearch.py x: 54 lines of code y: 3 # changes src/components/hmmsearch.py x: 50 lines of code y: 3 # changes src/components/jackhmmer.py x: 38 lines of code y: 3 # changes src/components/model_predict.py x: 48 lines of code y: 6 # changes src/components/predict_relax.py x: 53 lines of code y: 9 # changes src/pipelines/alphafold_inference_pipeline.py x: 108 lines of code y: 12 # changes src/pipelines/alphafold_inference_pipeline_sequential.py x: 85 lines of code y: 11 # changes src/pipelines/alphafold_optimized_monomer.py x: 173 lines of code y: 8 # changes src/setup.py x: 7 lines of code y: 1 # changes src/utils/__init__.py x: 1 lines of code y: 1 # changes env-setup-portal/output.tf x: 3 lines of code y: 2 # changes env-setup-portal/terraform-sample.tfvars x: 29 lines of code y: 2 # changes env-setup-portal/variables.tf x: 55 lines of code y: 5 # changes env-setup/gcs_bucket.tf x: 11 lines of code y: 5 # changes env-setup/local_provisioner.tf x: 34 lines of code y: 5 # changes env-setup/network.tf x: 30 lines of code y: 5 # changes env-setup/pipeline_images.tf x: 49 lines of code y: 4 # changes env-setup/service_accounts.tf x: 38 lines of code y: 5 # changes env-setup/terraform-sample.tfvars x: 26 lines of code y: 5 # changes env-setup/variables.tf x: 121 lines of code y: 5 # changes env-setup/vertex-notebook.tf x: 23 lines of code y: 5 # changes src/backend/templates/index.html x: 16 lines of code y: 3 # changes src/config.py x: 32 lines of code y: 15 # changes src/frontend/index.html x: 13 lines of code y: 2 # changes src/frontend/src/App.tsx x: 107 lines of code y: 2 # changes src/frontend/src/JobResults.tsx x: 227 lines of code y: 3 # changes src/frontend/src/common/StringSet.ts x: 44 lines of code y: 2 # changes src/frontend/src/components/GoogleSignInButton.tsx x: 81 lines of code y: 2 # changes src/frontend/src/components/ResponsiveAppBar.tsx x: 74 lines of code y: 3 # changes src/frontend/src/components/SimpleDialog.tsx x: 72 lines of code y: 3 # changes src/frontend/src/index.css x: 57 lines of code y: 3 # changes src/frontend/src/main.tsx x: 4 lines of code y: 2 # changes src/frontend/vite.config.ts x: 5 lines of code y: 2 # changes src/utils/fasta_utils.py x: 24 lines of code y: 4 # changes env-setup/filestore.tf x: 21 lines of code y: 3 # changes env-setup/outputs.tf x: 18 lines of code y: 2 # changes env-setup/vertex-training-template.yaml x: 17 lines of code y: 2 # changes src/components/alphafold_utils.py x: 464 lines of code y: 6 # changes src/analysis/utils.py x: 29 lines of code y: 1 # changes src/utils/compile_utils.py x: 77 lines of code y: 2 # changes src/utils/run_utils.py x: 75 lines of code y: 2 # changes src/components/__init__.py x: 9 lines of code y: 3 # changes
20.0
# changes
  min: 1.0
  average: 4.49
  25th percentile: 2.0
  median: 3.0
  75th percentile: 6.0
  max: 20.0
0 678.0
lines of code
min: 1.0 | average: 102.54 | 25th percentile: 24.0 | median: 49.0 | 75th percentile: 85.0 | max: 678.0

Number of Contributors vs. Number of Changes: 59 points

env-setup/main.tf x: 5 # contributors y: 7 # changes env-setup/versions.tf x: 1 # contributors y: 1 # changes 1-alphafold-quick-start.ipynb x: 13 # contributors y: 20 # changes 1.1-alphafold-quick-start-multimer.ipynb x: 7 # contributors y: 6 # changes src/backend/main.py x: 3 # contributors y: 6 # changes src/frontend/src/NewJob.tsx x: 3 # contributors y: 5 # changes src/frontend/src/common/CommonFunctions.ts x: 3 # contributors y: 3 # changes env-setup-portal/main.tf x: 3 # contributors y: 11 # changes 2-alphafold-metadata-exploration.ipynb x: 6 # contributors y: 6 # changes src/components/aggregate_features.py x: 5 # contributors y: 6 # changes src/components/configure_run.py x: 4 # contributors y: 4 # changes src/components/data_pipeline.py x: 5 # contributors y: 5 # changes src/components/predict_relax.py x: 7 # contributors y: 9 # changes src/pipelines/alphafold_inference_pipeline.py x: 8 # contributors y: 12 # changes src/pipelines/alphafold_inference_pipeline_sequential.py x: 8 # contributors y: 11 # changes src/pipelines/alphafold_optimized_monomer.py x: 7 # contributors y: 8 # changes src/setup.py x: 2 # contributors y: 1 # changes env-setup-portal/output.tf x: 2 # contributors y: 2 # changes env-setup-portal/variables.tf x: 2 # contributors y: 5 # changes env-setup/gcs_bucket.tf x: 4 # contributors y: 5 # changes env-setup/pipeline_images.tf x: 2 # contributors y: 4 # changes src/backend/templates/index.html x: 2 # contributors y: 3 # changes src/config.py x: 10 # contributors y: 15 # changes env-setup/vertex-training-template.yaml x: 1 # contributors y: 2 # changes src/components/alphafold_utils.py x: 4 # contributors y: 6 # changes
20.0
# changes
  min: 1.0
  average: 4.49
  25th percentile: 2.0
  median: 3.0
  75th percentile: 6.0
  max: 20.0
0 13.0
# contributors
min: 1.0 | average: 3.51 | 25th percentile: 2.0 | median: 3.0 | 75th percentile: 4.0 | max: 13.0

Number of Contributors vs. File Size: 59 points

env-setup/main.tf x: 5 # contributors y: 26 lines of code env-setup/versions.tf x: 1 # contributors y: 53 lines of code 1-alphafold-quick-start.ipynb x: 13 # contributors y: 404 lines of code 1.1-alphafold-quick-start-multimer.ipynb x: 7 # contributors y: 401 lines of code src/analysis/residue_constants.py x: 1 # contributors y: 678 lines of code src/backend/main.py x: 3 # contributors y: 320 lines of code src/frontend/src/NewJob.tsx x: 3 # contributors y: 489 lines of code src/frontend/src/common/CommonFunctions.ts x: 3 # contributors y: 117 lines of code env-setup-portal/main.tf x: 3 # contributors y: 170 lines of code 2-alphafold-metadata-exploration.ipynb x: 6 # contributors y: 570 lines of code src/components/aggregate_features.py x: 5 # contributors y: 43 lines of code src/components/configure_run.py x: 4 # contributors y: 64 lines of code src/components/data_pipeline.py x: 5 # contributors y: 74 lines of code src/components/hhblits.py x: 3 # contributors y: 40 lines of code src/components/hhsearch.py x: 3 # contributors y: 54 lines of code src/components/hmmsearch.py x: 3 # contributors y: 50 lines of code src/components/model_predict.py x: 5 # contributors y: 48 lines of code src/components/predict_relax.py x: 7 # contributors y: 53 lines of code src/components/relax_protein.py x: 6 # contributors y: 43 lines of code src/pipelines/alphafold_inference_pipeline.py x: 8 # contributors y: 108 lines of code src/pipelines/alphafold_inference_pipeline_sequential.py x: 8 # contributors y: 85 lines of code src/pipelines/alphafold_optimized_monomer.py x: 7 # contributors y: 173 lines of code src/setup.py x: 2 # contributors y: 7 lines of code src/utils/__init__.py x: 2 # contributors y: 1 lines of code env-setup-portal/output.tf x: 2 # contributors y: 3 lines of code env-setup-portal/terraform-sample.tfvars x: 2 # contributors y: 29 lines of code env-setup-portal/variables.tf x: 2 # contributors y: 55 lines of code env-setup/gcs_bucket.tf x: 4 # contributors y: 11 lines of code env-setup/local_provisioner.tf x: 4 # contributors y: 34 lines of code env-setup/network.tf x: 4 # contributors y: 30 lines of code env-setup/pipeline_images.tf x: 2 # contributors y: 49 lines of code env-setup/service_accounts.tf x: 4 # contributors y: 38 lines of code env-setup/terraform-sample.tfvars x: 4 # contributors y: 26 lines of code env-setup/variables.tf x: 4 # contributors y: 121 lines of code env-setup/vertex-notebook.tf x: 4 # contributors y: 23 lines of code src/backend/templates/index.html x: 2 # contributors y: 16 lines of code src/config.py x: 10 # contributors y: 32 lines of code src/frontend/index.html x: 2 # contributors y: 13 lines of code src/frontend/src/App.tsx x: 2 # contributors y: 107 lines of code src/frontend/src/JobResults.tsx x: 2 # contributors y: 227 lines of code src/frontend/src/common/StringSet.ts x: 2 # contributors y: 44 lines of code src/frontend/src/components/GoogleSignInButton.tsx x: 2 # contributors y: 81 lines of code src/frontend/src/components/ResponsiveAppBar.tsx x: 2 # contributors y: 74 lines of code src/frontend/src/components/SimpleDialog.tsx x: 2 # contributors y: 72 lines of code src/frontend/src/index.css x: 2 # contributors y: 57 lines of code env-setup/filestore.tf x: 2 # contributors y: 21 lines of code env-setup/outputs.tf x: 2 # contributors y: 18 lines of code env-setup/vertex-training-template.yaml x: 1 # contributors y: 17 lines of code src/components/alphafold_utils.py x: 4 # contributors y: 464 lines of code src/analysis/utils.py x: 1 # contributors y: 29 lines of code src/utils/compile_utils.py x: 2 # contributors y: 77 lines of code src/components/__init__.py x: 2 # contributors y: 9 lines of code
678.0
lines of code
  min: 1.0
  average: 102.54
  25th percentile: 24.0
  median: 49.0
  75th percentile: 85.0
  max: 678.0
0 13.0
# contributors
min: 1.0 | average: 3.51 | 25th percentile: 2.0 | median: 3.0 | 75th percentile: 4.0 | max: 13.0