anthropics/life-sciences
File Age & Freshness
File age measurements show the distribution of file ages (days since the first commit) and the file freshness (days since the latest commit).
File Change History Overall
File Age Distribution Overall
Days since first update
  • There are 30 files with 7,013 lines of code in files.
    • 0 files that are 366+ days old (0 lines of code)
    • 30 files that are 181-365 days old (7,013 lines of code)
    • 0 files that are 91-180 days old (0 lines of code)
    • 0 files that are 31-90 days old (0 lines of code)
    • 0 files that are 1-30 days old (0 lines of code)
0% | 100% | 0% | 0% | 0%
Legend:
366+
181-365
91-180
31-90
1-30

explore: grouped by folders | grouped by age
File Freshness Distribution Overall
Days since last update
  • There are 30 files with 7,013 lines of code in files.
    • 0 files have been last changed 366+ days ago (0 lines of code)
    • 30 files have been last changed 181-365 days ago (7,013 lines of code)
    • 0 files have been last changed 91-180 days ago (0 lines of code)
    • 0 files have been last changed 31-90 days ago (0 lines of code)
    • 0 files have been last changed 1-30 days ago (0 lines of code)
0% | 100% | 0% | 0% | 0%
Legend:
366+
181-365
91-180
31-90
1-30

explore: grouped by folders | grouped by freshness
File Change History per File Extension
md, py, json, txt, yml, yaml, gitignore
File Age Distribution per Extension
Days since first update
366+
181-365
91-180
31-90
1-30
py0% | 100% | 0% | 0% | 0%
yaml0% | 100% | 0% | 0% | 0%
File Freshness Distribution per Extension
Days since last update
366+
181-365
91-180
31-90
1-30
py0% | 100% | 0% | 0% | 0%
yaml0% | 100% | 0% | 0% | 0%
File Change History per Logical Decomposition
primary
primary (file age distribution)
Days since first update
366+
181-365
91-180
31-90
1-30
nextflow-development0% | 100% | 0% | 0% | 0%
instrument-data-to-allotrope0% | 100% | 0% | 0% | 0%
scvi-tools0% | 100% | 0% | 0% | 0%
single-cell-rna-qc0% | 100% | 0% | 0% | 0%
clinical-trial-protocol-skill0% | 100% | 0% | 0% | 0%
primary (file freshness distribution)
Days since last update
366+
181-365
91-180
31-90
1-30
nextflow-development0% | 100% | 0% | 0% | 0%
instrument-data-to-allotrope0% | 100% | 0% | 0% | 0%
scvi-tools0% | 100% | 0% | 0% | 0%
single-cell-rna-qc0% | 100% | 0% | 0% | 0%
clinical-trial-protocol-skill0% | 100% | 0% | 0% | 0%
Oldest Files (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
Files Not Recently Changed (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
Most Recently Created Files (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
Most Recently Changed Files (Top 30)
File# lines# unitscreatedlast modified# changes
(days)		# contributorsfirst
contributor		latest
contributor
sra_geo_fetch.py
in nextflow-development/scripts
 511 11 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
ncbi_utils.py
in nextflow-development/scripts/utils
 509 16 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
manage_genomes.py
in nextflow-development/scripts
 368 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
check_environment.py
in nextflow-development/scripts
 348 9 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_size_calculator.py
in clinical-trial-protocol-skill/scripts
 326 3 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
model_utils.py
in scvi-tools/scripts
 319 10 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
generate_samplesheet.py
in nextflow-development/scripts
 288 10 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_adata.py
in scvi-tools/scripts
 253 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
train_model.py
in scvi-tools/scripts
 233 7 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
sarek.yaml
in nextflow-development/scripts/config/pipelines
 209 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
detect_data_type.py
in nextflow-development/scripts
 201 6 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validators.py
in nextflow-development/scripts/utils
 171 8 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
atacseq.yaml
in nextflow-development/scripts/config/pipelines
 167 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
sample_inference.py
in nextflow-development/scripts/utils
 161 7 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
integrate_datasets.py
in scvi-tools/scripts
 135 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
rnaseq.yaml
in nextflow-development/scripts/config/pipelines
 130 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
differential_expression.py
in scvi-tools/scripts
 129 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
transfer_labels.py
in scvi-tools/scripts
 125 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
cluster_embed.py
in scvi-tools/scripts
 111 3 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
genomes.yaml
in nextflow-development/scripts/config
 108 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
file_discovery.py
in nextflow-development/scripts/utils
 101 5 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
prepare_data.py
in scvi-tools/scripts
 87 2 2026-01-09 2026-01-09 1 1 jwei@anthropic.com jwei@anthropic.com
__init__.py
in nextflow-development/scripts/utils
 47 - 2026-01-09 2026-01-09 1 2 andres@anthropic.com noreply@anthropic.com
validate_asm.py
in instrument-data-to-allotrope/scripts
 815 24 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
convert_to_asm.py
in instrument-data-to-allotrope/scripts
 386 11 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
export_parser.py
in instrument-data-to-allotrope/scripts
 234 6 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
flatten_asm.py
in instrument-data-to-allotrope/scripts
 153 7 2026-01-08 2026-01-08 1 1 daniellechou@anthropic.com daniellechou@anthropic.com
qc_analysis.py
in single-cell-rna-qc/scripts
 155 - 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
qc_plotting.py
in single-cell-rna-qc/scripts
 153 3 2025-10-20 2025-10-20 1 2 daisy@anthropic.com jwei@anthropic.com
qc_core.py
in single-cell-rna-qc/scripts
 80 6 2025-10-20 2025-10-20 1 2 jwei@anthropic.com jwei@anthropic.com
Summary
  • Number of files: 30
  • Daily file updates (only one update per file and date counted): 153
  • First update: 2025-10-18
  • Latest update: 2026-05-08
  • Days between first and latest update: 203 (29 weeks, estimated 145 working days)
  • Active days (at least one file change): 17
  • Data: