GoogleCloudPlatform / vertex-ai-alphafold-inference-pipeline

Intro

Conditional complexity (also called cyclomatic complexity) is a term used to measure the complexity of software. The term refers to the number of possible paths through a program function. A higher value ofter means higher maintenance and testing costs (infosecinstitute.com).
Conditional complexity is calculated by counting all conditions in the program that can affect the execution path (e.g. if statement, loops, switches, and/or operators, try and catch blocks...).
Conditional complexity is measured at the unit level (methods, functions...).
Units are classified in four categories based on the measured McCabe index: 1-5 (simple units), 6-10 (medium complex units), 11-25 (complex units), 26+ (very complex units).

Learn more...

Conditional Complexity Overall

There are 103 units with 1,615 lines of code in units (24.6% of code).

0 very complex units (0 lines of code)
0 complex units (0 lines of code)
9 medium complex units (348 lines of code)
10 simple units (311 lines of code)
84 very simple units (956 lines of code)

Legend:

51+

26-50

11-25

6-10

1-5

Alternative Visuals

3D view of all units

Conditional Complexity per Extension

51+

26-50

11-25

6-10

1-5

Conditional Complexity per Logical Component

primary logical decomposition

51+

26-50

11-25

6-10

1-5

Most Complex Units

Top 50 most complex units

Unit	# lines	McCabe index	# params
def _parse_hhr_hit() in src/analysis/parsers.py	54	22	1
def convert_stockholm_to_a3m() in src/analysis/parsers.py	40	21	3
def parse_stockholm() in src/analysis/parsers.py	33	14	1
def remove_empty_columns_from_stockholm_msa() in src/analysis/parsers.py	32	14	1
def make_atom14_dists_bounds() in src/analysis/residue_constants.py	38	13	2
def extract_prediction_relaxation_tasks() in src/backend/main.py	38	13	2
def load_stereo_chemical_props() in src/analysis/residue_constants.py	62	12	0
function calculateAcceleratorCount() in src/frontend/src/common/CommonFunctions.ts	28	12	1
def deduplicate_stockholm_msa() in src/analysis/parsers.py	23	11	1
def _make_rigid_group_constants() in src/analysis/residue_constants.py	47	10	0
def get_dashboarddata() in src/backend/main.py	59	10	0
def _keep_line() in src/analysis/parsers.py	17	9	2
def fold() in src/backend/main.py	67	9	0
def validate_input() in src/analysis/notebook_utils.py	33	8	4
def truncate_stockholm_msa() in src/analysis/parsers.py	15	8	2
def parse_hmmsearch_a3m() in src/analysis/parsers.py	26	7	3
def sequence_to_onehot() in src/analysis/residue_constants.py	19	6	4
function convertArrayToMap() in src/frontend/src/common/CommonFunctions.ts	15	6	3
def decide_accelerator_type() in src/backend/main.py	13	6	1
def chi_angle_atom() in src/analysis/residue_constants.py	15	5	1
def clean_and_validate_sequence() in src/analysis/notebook_utils.py	21	5	3
def merge_chunked_msa() in src/analysis/notebook_utils.py	23	5	3
def overwrite_b_factors() in src/analysis/utils.py	25	5	2
def parse_a3m() in src/analysis/parsers.py	18	5	1
def parse_hhr() in src/analysis/parsers.py	9	5	1
def parse_e_values_from_tblout() in src/analysis/parsers.py	9	5	1
def _get_indices() in src/analysis/parsers.py	12	5	2
def _make_standard_atom_mask() in src/analysis/residue_constants.py	9	4	0
def show_msa_info() in src/analysis/notebook_utils.py	20	4	2
def parse_fasta() in src/analysis/parsers.py	15	4	1
def _convert_sto_seq_to_a3m() in src/analysis/parsers.py	7	4	2
def _read_msa() in src/components/alphafold_utils.py	11	4	2
def valid_user() in src/backend/main.py	10	4	0
def _update_hhr_residue_indices_list() in src/analysis/parsers.py	9	3	3
def _main() in src/utils/compile_utils.py	25	3	1
def _maybe_bool() in src/utils/run_utils.py	6	3	1
def _main() in src/utils/run_utils.py	33	3	1
export default function SimpleDialog() in src/frontend/src/components/SimpleDialog.tsx	61	3	1
function isInvalidArray() in src/frontend/src/common/StringSet.ts	3	3	1
function checkAndExecuteFn() in src/frontend/src/common/CommonFunctions.ts	5	3	1
def check_fasta() in src/backend/main.py	12	3	0
def reformatBucketUri() in src/backend/main.py	6	3	1
def __post_init__() in src/analysis/parsers.py	9	2	1
def _get_hhr_line_regex_groups() in src/analysis/parsers.py	6	2	2
def _parse_hmmsearch_description() in src/analysis/parsers.py	13	2	1
def _read_sequence() in src/components/alphafold_utils.py	8	2	1
def _convert_params() in src/utils/run_utils.py	4	2	1
function ResponsiveAppBar() in src/frontend/src/components/ResponsiveAppBar.tsx	69	2	6
function App() in src/frontend/src/App.tsx	90	2	0
add() in src/frontend/src/common/StringSet.ts	7	2	1