alibaba / LucaProt - File Age & Freshness

File age measurements show the distribution of file ages (days since the first commit) and the file freshness (days since the latest commit).

Summary

Number of files: 60
Daily file updates (only one update per file and date counted): 1064
First update: 2023-04-16
Latest update: 2025-05-01
Days between first and latest update: 747 (106 weeks, estimated 530 working days)
Active days (at least one file change): 48
Data:

Organized per file

File Change History Overall

File Age Distribution Overall

Days since first update

There are 60 files with 20,560 lines of code in files.

54 files that are 366+ days old (18,321 lines of code)
0 files that are 181-365 days old (0 lines of code)
3 files that are 91-180 days old (1,459 lines of code)
0 files that are 31-90 days old (0 lines of code)
3 files that are 1-30 days old (780 lines of code)

Legend:

366+

181-365

91-180

31-90

1-30

explore: grouped by folders | grouped by age

File Freshness Distribution Overall

Days since last update

There are 60 files with 20,560 lines of code in files.

32 files have been last changed 366+ days ago (9,147 lines of code)
5 files have been last changed 181-365 days ago (1,239 lines of code)
9 files have been last changed 91-180 days ago (2,934 lines of code)
0 files have been last changed 31-90 days ago (0 lines of code)
14 files have been last changed 1-30 days ago (7,240 lines of code)

Legend:

366+

181-365

91-180

31-90

1-30

explore: grouped by folders | grouped by freshness

File Change History per File Extension

pt, py, txt, sh, json, md, xml, gitignore, r, html, yaml

File Age Distribution per Extension

Days since first update

366+

181-365

91-180

31-90

1-30

File Freshness Distribution per Extension

Days since last update

366+

181-365

91-180

31-90

1-30

File Change History per Logical Decomposition

primary

primary (file age distribution)

Days since first update

366+

181-365

91-180

31-90

1-30

primary (file freshness distribution)

Days since last update

366+

181-365

91-180

31-90

1-30

Oldest Files (Top 50)

File	# lines	# units	created	last modified	# changes (days)	# contributors	first contributor	latest contributor
data_loader.py in src	1344	30	2023-04-16	2025-04-26	3	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
modeling_bert.py in src/SSFN	1338	65	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict.py in src	889	9	2023-04-16	2025-05-01	8	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
dnn.py in src/baselines	805	16	2023-04-16	2023-04-24	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
run.py in src/deep_baselines	778	10	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
run.py in src	735	1	2023-04-16	2025-04-30	9	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_one_sample.py in src	683	10	2023-04-16	2025-05-01	11	4	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
lgbm.py in src/baselines	602	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
xgb.py in src/baselines	566	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_deep_baselines.py in src/deep_baselines	546	10	2023-04-16	2025-05-01	6	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
cheer.py in src/deep_baselines	497	9	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_from_esm_v1.py in src/protein_structure	447	7	2023-04-16	2024-12-20	4	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
multi_label_metrics.py in src/common	428	17	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
metrics.py in src/common	419	22	2023-04-16	2024-05-22	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
model.py in src/SSFN	394	4	2023-04-16	2025-02-07	7	3	61005150+non-name-2020@user...	61005150+non-name-2020@user...
utils.py in src	376	19	2023-04-16	2025-05-01	7	4	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
trainer.py in src	369	2	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
embedding_from_esmfold.py in src/protein_structure	337	3	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig_aff4_2.py in src/plot	319	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
ncbi_id_2_uniprot.py in src/data_preprocess	308	15	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_2.py in src/plot	304	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
standardization_lat_lon_info.py in src/geo_map	291	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_1.py in src/plot	285	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
pooling.py in src/SSFN	259	25	2023-04-16	2024-09-26	7	2	61005150+non-name-2020@user...	61005150+non-name-2020@user...
data_preprocess_into_tfrecords_for_rdrp.py in src/data_preprocess	252	9	2023-04-16	2025-04-26	4	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predictor.py in src	251	1	2023-04-16	2025-04-26	2	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
parse_loc_lat_lon_from_attr.py in src/geo_map	232	2	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
contact_map_builder.py in src/biotoolbox	229	20	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virtifier.py in src/deep_baselines	227	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virhunter.py in src/deep_baselines	212	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virseeker.py in src/deep_baselines	209	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
tf_records_generator.py in src/data_preprocess	207	8	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict.py in src/baselines	205	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_structure.py in src/protein_structure	203	5	2023-04-16	2024-11-01	7	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
subword.py in src/data_preprocess	190	8	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
evaluater.py in src	184	1	2023-04-16	2025-04-26	3	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
merge_embedding_pdb_result.py in src/protein_structure	177	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
process_predict_result.py in src/result_process	162	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_entrez.py in src/geo_map	156	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
loss.py in src/common	150	8	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
layers.py in src/SSFN	135	9	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_file_reader.py in src/biotoolbox	129	10	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
contact_map_generator.py in src/biotoolbox	100	11	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_update.py in src/geo_map	87	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_manual.py in src/geo_map	86	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
statistics.py in src/deep_baselines	79	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig_aff4_1.py in src/plot	77	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
self_testing_nearest_station_antarctica.py in src/geo_map	71	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
extract_attr_from_biosample_page.py in src/geo_map	69	2	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
gcn.py in src/SSFN	66	4	2023-04-16	2023-04-29	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com

Files Not Recently Changed (Top 50)

File	# lines	# units	created	last modified	# changes (days)	# contributors	first contributor	latest contributor
sampling_verify_embedding_is_ok.py in src/protein_structure	45	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
download_biosample_page.py in src/geo_map	52	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
extract_attr_from_biosample_page.py in src/geo_map	69	2	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
self_testing_nearest_station_antarctica.py in src/geo_map	71	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig_aff4_1.py in src/plot	77	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
statistics.py in src/deep_baselines	79	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_manual.py in src/geo_map	86	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_update.py in src/geo_map	87	-	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
contact_map_generator.py in src/biotoolbox	100	11	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
layers.py in src/SSFN	135	9	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
loss.py in src/common	150	8	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_entrez.py in src/geo_map	156	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
process_predict_result.py in src/result_process	162	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
merge_embedding_pdb_result.py in src/protein_structure	177	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict.py in src/baselines	205	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virseeker.py in src/deep_baselines	209	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virhunter.py in src/deep_baselines	212	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virtifier.py in src/deep_baselines	227	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
parse_loc_lat_lon_from_attr.py in src/geo_map	232	2	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_1.py in src/plot	285	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
standardization_lat_lon_info.py in src/geo_map	291	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_2.py in src/plot	304	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig_aff4_2.py in src/plot	319	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
multi_label_metrics.py in src/common	428	17	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
cheer.py in src/deep_baselines	497	9	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
xgb.py in src/baselines	566	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
lgbm.py in src/baselines	602	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
modeling_bert.py in src/SSFN	1338	65	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
dnn.py in src/baselines	805	16	2023-04-16	2023-04-24	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
gcn.py in src/SSFN	66	4	2023-04-16	2023-04-29	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
embedding_from_esmfold.py in src/protein_structure	337	3	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
run.py in src/deep_baselines	778	10	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_file_reader.py in src/biotoolbox	129	10	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
contact_map_builder.py in src/biotoolbox	229	20	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
metrics.py in src/common	419	22	2023-04-16	2024-05-22	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
pooling.py in src/SSFN	259	25	2023-04-16	2024-09-26	7	2	61005150+non-name-2020@user...	61005150+non-name-2020@user...
predict_structure.py in src/protein_structure	203	5	2023-04-16	2024-11-01	7	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
verify_train_dataset.py in src/data_preprocess	52	-	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
subword.py in src/data_preprocess	190	8	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
tf_records_generator.py in src/data_preprocess	207	8	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v2.py in src/data_preprocess	256	10	2024-12-20	2024-12-20	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
ncbi_id_2_uniprot.py in src/data_preprocess	308	15	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
trainer.py in src	369	2	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_from_esm_v1.py in src/protein_structure	447	7	2023-04-16	2024-12-20	4	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v1.py in src/data_preprocess	711	15	2024-12-20	2024-12-20	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
model.py in src/SSFN	394	4	2023-04-16	2025-02-07	7	3	61005150+non-name-2020@user...	61005150+non-name-2020@user...
evaluater.py in src	184	1	2023-04-16	2025-04-26	3	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predictor.py in src	251	1	2023-04-16	2025-04-26	2	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_into_tfrecords_for_rdrp.py in src/data_preprocess	252	9	2023-04-16	2025-04-26	4	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v3_extend.py in src/data_preprocess	492	-	2024-12-20	2025-04-26	2	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com

Most Recently Created Files (Top 50)

File	# lines	# units	created	last modified	# changes (days)	# contributors	first contributor	latest contributor
app.py in src/app	620	12	2025-05-01	2025-05-01	1	2	153056894+lucaone@users.nor...	sanyuan.hy@alibaba-inc.com
index.html in src/app/templates	148	-	2025-05-01	2025-05-01	1	2	153056894+lucaone@users.nor...	sanyuan.hy@alibaba-inc.com
args.py in src/app	12	-	2025-05-01	2025-05-01	1	2	153056894+lucaone@users.nor...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v1.py in src/data_preprocess	711	15	2024-12-20	2024-12-20	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v3_extend.py in src/data_preprocess	492	-	2024-12-20	2025-04-26	2	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v2.py in src/data_preprocess	256	10	2024-12-20	2024-12-20	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_many_samples.py in src	708	10	2023-04-28	2025-05-01	9	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_loader.py in src	1344	30	2023-04-16	2025-04-26	3	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
modeling_bert.py in src/SSFN	1338	65	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict.py in src	889	9	2023-04-16	2025-05-01	8	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
dnn.py in src/baselines	805	16	2023-04-16	2023-04-24	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
run.py in src/deep_baselines	778	10	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
run.py in src	735	1	2023-04-16	2025-04-30	9	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_one_sample.py in src	683	10	2023-04-16	2025-05-01	11	4	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
lgbm.py in src/baselines	602	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
xgb.py in src/baselines	566	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_deep_baselines.py in src/deep_baselines	546	10	2023-04-16	2025-05-01	6	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
cheer.py in src/deep_baselines	497	9	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_from_esm_v1.py in src/protein_structure	447	7	2023-04-16	2024-12-20	4	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
multi_label_metrics.py in src/common	428	17	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
metrics.py in src/common	419	22	2023-04-16	2024-05-22	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
model.py in src/SSFN	394	4	2023-04-16	2025-02-07	7	3	61005150+non-name-2020@user...	61005150+non-name-2020@user...
utils.py in src	376	19	2023-04-16	2025-05-01	7	4	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
trainer.py in src	369	2	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
embedding_from_esmfold.py in src/protein_structure	337	3	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig_aff4_2.py in src/plot	319	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
ncbi_id_2_uniprot.py in src/data_preprocess	308	15	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_2.py in src/plot	304	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
standardization_lat_lon_info.py in src/geo_map	291	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_1.py in src/plot	285	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
pooling.py in src/SSFN	259	25	2023-04-16	2024-09-26	7	2	61005150+non-name-2020@user...	61005150+non-name-2020@user...
data_preprocess_into_tfrecords_for_rdrp.py in src/data_preprocess	252	9	2023-04-16	2025-04-26	4	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predictor.py in src	251	1	2023-04-16	2025-04-26	2	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
parse_loc_lat_lon_from_attr.py in src/geo_map	232	2	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
contact_map_builder.py in src/biotoolbox	229	20	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virtifier.py in src/deep_baselines	227	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virhunter.py in src/deep_baselines	212	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virseeker.py in src/deep_baselines	209	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
tf_records_generator.py in src/data_preprocess	207	8	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict.py in src/baselines	205	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_structure.py in src/protein_structure	203	5	2023-04-16	2024-11-01	7	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
subword.py in src/data_preprocess	190	8	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
evaluater.py in src	184	1	2023-04-16	2025-04-26	3	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
merge_embedding_pdb_result.py in src/protein_structure	177	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
process_predict_result.py in src/result_process	162	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_entrez.py in src/geo_map	156	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
loss.py in src/common	150	8	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
layers.py in src/SSFN	135	9	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_file_reader.py in src/biotoolbox	129	10	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
contact_map_generator.py in src/biotoolbox	100	11	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com

Most Recently Changed Files (Top 50)

File	# lines	# units	created	last modified	# changes (days)	# contributors	first contributor	latest contributor
predict.py in src	889	9	2023-04-16	2025-05-01	8	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_many_samples.py in src	708	10	2023-04-28	2025-05-01	9	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_one_sample.py in src	683	10	2023-04-16	2025-05-01	11	4	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
app.py in src/app	620	12	2025-05-01	2025-05-01	1	2	153056894+lucaone@users.nor...	sanyuan.hy@alibaba-inc.com
predict_deep_baselines.py in src/deep_baselines	546	10	2023-04-16	2025-05-01	6	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
utils.py in src	376	19	2023-04-16	2025-05-01	7	4	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
index.html in src/app/templates	148	-	2025-05-01	2025-05-01	1	2	153056894+lucaone@users.nor...	sanyuan.hy@alibaba-inc.com
args.py in src/app	12	-	2025-05-01	2025-05-01	1	2	153056894+lucaone@users.nor...	sanyuan.hy@alibaba-inc.com
run.py in src	735	1	2023-04-16	2025-04-30	9	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_loader.py in src	1344	30	2023-04-16	2025-04-26	3	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v3_extend.py in src/data_preprocess	492	-	2024-12-20	2025-04-26	2	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_into_tfrecords_for_rdrp.py in src/data_preprocess	252	9	2023-04-16	2025-04-26	4	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predictor.py in src	251	1	2023-04-16	2025-04-26	2	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
evaluater.py in src	184	1	2023-04-16	2025-04-26	3	3	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
model.py in src/SSFN	394	4	2023-04-16	2025-02-07	7	3	61005150+non-name-2020@user...	61005150+non-name-2020@user...
data_preprocess_for_rdrp_v1.py in src/data_preprocess	711	15	2024-12-20	2024-12-20	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_from_esm_v1.py in src/protein_structure	447	7	2023-04-16	2024-12-20	4	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
trainer.py in src	369	2	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
ncbi_id_2_uniprot.py in src/data_preprocess	308	15	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
data_preprocess_for_rdrp_v2.py in src/data_preprocess	256	10	2024-12-20	2024-12-20	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
tf_records_generator.py in src/data_preprocess	207	8	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
subword.py in src/data_preprocess	190	8	2023-04-16	2024-12-20	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
verify_train_dataset.py in src/data_preprocess	52	-	2023-04-16	2024-12-20	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict_structure.py in src/protein_structure	203	5	2023-04-16	2024-11-01	7	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
pooling.py in src/SSFN	259	25	2023-04-16	2024-09-26	7	2	61005150+non-name-2020@user...	61005150+non-name-2020@user...
metrics.py in src/common	419	22	2023-04-16	2024-05-22	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
contact_map_builder.py in src/biotoolbox	229	20	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
structure_file_reader.py in src/biotoolbox	129	10	2023-04-16	2024-05-17	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
run.py in src/deep_baselines	778	10	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
embedding_from_esmfold.py in src/protein_structure	337	3	2023-04-16	2023-07-17	3	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
gcn.py in src/SSFN	66	4	2023-04-16	2023-04-29	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
dnn.py in src/baselines	805	16	2023-04-16	2023-04-24	2	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
modeling_bert.py in src/SSFN	1338	65	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
lgbm.py in src/baselines	602	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
xgb.py in src/baselines	566	16	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
cheer.py in src/deep_baselines	497	9	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
multi_label_metrics.py in src/common	428	17	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig_aff4_2.py in src/plot	319	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_2.py in src/plot	304	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
standardization_lat_lon_info.py in src/geo_map	291	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
plot_map_pie_fig4_1.py in src/plot	285	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
parse_loc_lat_lon_from_attr.py in src/geo_map	232	2	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virtifier.py in src/deep_baselines	227	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virhunter.py in src/deep_baselines	212	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
virseeker.py in src/deep_baselines	209	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
predict.py in src/baselines	205	6	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
merge_embedding_pdb_result.py in src/protein_structure	177	4	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
process_predict_result.py in src/result_process	162	3	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
get_biosample_from_entrez.py in src/geo_map	156	1	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com
loss.py in src/common	150	8	2023-04-16	2023-04-16	1	2	61005150+non-name-2020@user...	sanyuan.hy@alibaba-inc.com