anthropics/uplifting-biomolecular-modeling
Duplication
Places in code with 6 or more lines that are exactly the same.
Duplication Overall
  • 39% duplication:
    • 695,966 cleaned lines of cleaned code (without empty lines, comments, and frequently duplicated constructs such as imports)
    • 274,453 duplicated lines
  • 20,400 duplicates
system39% (274,453 lines)
dependency graphs: 2D graph | 2D graph (with duplicates)... | 3D graph | 3D graph (with duplicates)...
Duplication per Extension
py39% (262,645 lines)
cu48% (5,829 lines)
cuh34% (3,367 lines)
h70% (983 lines)
yaml54% (978 lines)
cpp94% (458 lines)
cc4% (181 lines)
pt<1% (12 lines)
Duplication per Component (primary)
openfold3_ob085% (53,486 lines)
openfold391% (53,100 lines)
protenix_v258% (32,166 lines)
pxdesign69% (26,950 lines)
opendde34% (20,976 lines)
common14% (15,354 lines)
caliby84% (12,636 lines)
atlasfold31% (7,984 lines)
boltz223% (5,975 lines)
af3_jax17% (5,678 lines)
esmfold214% (4,757 lines)
protenix_v131% (3,654 lines)
boltzgen32% (2,782 lines)
mosaic22% (2,782 lines)
ef2inv29% (2,679 lines)
af3_torch22% (2,580 lines)
e128% (2,453 lines)
rosettafold318% (2,339 lines)
colabfold24% (2,187 lines)
chai111% (2,070 lines)
af2ig31% (1,937 lines)
evo217% (1,875 lines)
colabdesign17% (1,459 lines)
proteinmpnn17% (813 lines)
genie311% (754 lines)
rfdiffusion110% (717 lines)
esmc10% (667 lines)
flashzoi14% (649 lines)
rfdiffusion39% (631 lines)
chrombpnet6% (433 lines)
progen28% (391 lines)
enformer14% (347 lines)
complexa12% (302 lines)
gpnstar8% (294 lines)
enformer_deepmind9% (204 lines)
borzoi9% (203 lines)
esm_if111% (189 lines)

Duplication Between Components (50+ lines)

flowchart TB
    n0["openfold3"]
    n1["openfold3_ob0"]
    n2["protenix_v2"]
    n3["pxdesign"]
    n4["opendde"]
    n5["protenix_v1"]
    n6["common"]
    n7["ef2inv"]
    n8["boltz2"]
    n9["boltzgen"]
    n10["af3_jax"]
    n11["af3_torch"]
    n12["af2ig"]
    n13["colabfold"]
    n14["mosaic"]
    n15["chai1"]
    n16["colabdesign"]
    n17["esmfold2"]
    n18["proteinmpnn"]
    n19["rfdiffusion3"]
    n20["rosettafold3"]
    n21["genie3"]
    n22["rfdiffusion1"]
    n0 ---|"105791"| n1
    n2 ---|"42618"| n3
    n4 ---|"34128"| n2
    n4 ---|"18973"| n3
    n5 ---|"6976"| n2
    n0 ---|"5220"| n3
    n6 ---|"5158"| n7
    n1 ---|"5104"| n3
    n8 ---|"4954"| n9
    n10 ---|"4256"| n11
    n4 ---|"3945"| n5
    n12 ---|"3195"| n13
    n0 ---|"3019"| n2
    n1 ---|"2975"| n2
    n8 ---|"2895"| n14
    n5 ---|"1985"| n3
    n15 ---|"1844"| n3
    n15 ---|"1839"| n1
    n15 ---|"1839"| n0
    n16 ---|"1828"| n13
    n4 ---|"1696"| n0
    n4 ---|"1696"| n1
    n6 ---|"1596"| n2
    n12 ---|"1549"| n16
    n6 ---|"1480"| n17
    n8 ---|"1348"| n1
    n8 ---|"1328"| n0
    n7 ---|"1234"| n17
    n8 ---|"1193"| n2
    n6 ---|"1118"| n0
    n8 ---|"1114"| n3
    n6 ---|"1107"| n1
    n15 ---|"1009"| n2
    n17 ---|"965"| n4
    n17 ---|"958"| n2
    n8 ---|"878"| n17
    n14 ---|"871"| n18
    n8 ---|"865"| n4
    n16 ---|"796"| n6
    n9 ---|"780"| n3
    n9 ---|"766"| n2
    n17 ---|"755"| n1
    n17 ---|"755"| n0
    n19 ---|"743"| n20
    n21 ---|"740"| n22
    n15 ---|"666"| n4
    n9 ---|"655"| n0
    n9 ---|"655"| n1
    n9 ---|"654"| n4
    n15 ---|"621"| n17
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    classDef highlighted fill:#00b2ee,stroke:#ffffff,color:#000000;
    linkStyle 0 stroke:#DC143CFF,stroke-width:10px
    linkStyle 1 stroke:#DC143C93,stroke-width:4px
    linkStyle 2 stroke:#DC143C82,stroke-width:3px
    linkStyle 3 stroke:#DC143C5E,stroke-width:1px
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    linkStyle 49 stroke:#DC143C4C,stroke-width:1px


2D force graph | 3D force graph

Show more details on duplication between components...
From Component
 --> To Component		 Duplicated
Lines		 File Pairs Details
openfold3 (91%)
  --> openfold3_ob0 (84%)		 105791 649 file pairs details...
protenix_v2 (38%)
  --> pxdesign (54%)		 42618 134 file pairs details...
opendde (28%)
  --> protenix_v2 (31%)		 34128 106 file pairs details...
opendde (15%)
  --> pxdesign (24%)		 18973 87 file pairs details...
protenix_v1 (30%)
  --> protenix_v2 (6%)		 6976 21 file pairs details...
openfold3 (4%)
  --> pxdesign (6%)		 5220 45 file pairs details...
common (2%)
  --> ef2inv (28%)		 5158 12 file pairs details...
openfold3_ob0 (4%)
  --> pxdesign (6%)		 5104 45 file pairs details...
boltz2 (9%)
  --> boltzgen (29%)		 4954 26 file pairs details...
af3_jax (6%)
  --> af3_torch (18%)		 4256 23 file pairs details...
opendde (3%)
  --> protenix_v1 (17%)		 3945 12 file pairs details...
af2ig (26%)
  --> colabfold (17%)		 3195 5 file pairs details...
openfold3 (2%)
  --> protenix_v2 (2%)		 3019 32 file pairs details...
openfold3_ob0 (2%)
  --> protenix_v2 (2%)		 2975 31 file pairs details...
boltz2 (5%)
  --> mosaic (11%)		 2895 17 file pairs details...
protenix_v1 (8%)
  --> pxdesign (2%)		 1985 9 file pairs details...
chai1 (5%)
  --> pxdesign (2%)		 1844 8 file pairs details...
chai1 (5%)
  --> openfold3_ob0 (1%)		 1839 7 file pairs details...
chai1 (5%)
  --> openfold3 (1%)		 1839 6 file pairs details...
colabdesign (11%)
  --> colabfold (10%)		 1828 3 file pairs details...
opendde (1%)
  --> openfold3 (1%)		 1696 23 file pairs details...
opendde (1%)
  --> openfold3_ob0 (1%)		 1696 23 file pairs details...
common (<1%)
  --> protenix_v2 (1%)		 1596 18 file pairs details...
af2ig (12%)
  --> colabdesign (9%)		 1549 4 file pairs details...
common (<1%)
  --> esmfold2 (2%)		 1480 10 file pairs details...
boltz2 (2%)
  --> openfold3_ob0 (1%)		 1348 12 file pairs details...
boltz2 (2%)
  --> openfold3 (1%)		 1328 11 file pairs details...
ef2inv (6%)
  --> esmfold2 (1%)		 1234 5 file pairs details...
boltz2 (2%)
  --> protenix_v2 (1%)		 1193 11 file pairs details...
common (<1%)
  --> openfold3 (<1%)		 1118 81 file pairs details...
boltz2 (2%)
  --> pxdesign (1%)		 1114 11 file pairs details...
common (<1%)
  --> openfold3_ob0 (<1%)		 1107 76 file pairs details...
chai1 (2%)
  --> protenix_v2 (<1%)		 1009 9 file pairs details...
esmfold2 (1%)
  --> opendde (<1%)		 965 11 file pairs details...
esmfold2 (1%)
  --> protenix_v2 (<1%)		 958 10 file pairs details...
boltz2 (1%)
  --> esmfold2 (1%)		 878 9 file pairs details...
mosaic (3%)
  --> proteinmpnn (9%)		 871 5 file pairs details...
boltz2 (1%)
  --> opendde (<1%)		 865 10 file pairs details...
colabdesign (4%)
  --> common (<1%)		 796 16 file pairs details...
boltzgen (4%)
  --> pxdesign (1%)		 780 6 file pairs details...
boltzgen (4%)
  --> protenix_v2 (<1%)		 766 8 file pairs details...
esmfold2 (1%)
  --> openfold3_ob0 (<1%)		 755 13 file pairs details...
esmfold2 (1%)
  --> openfold3 (<1%)		 755 13 file pairs details...
rfdiffusion3 (5%)
  --> rosettafold3 (2%)		 743 20 file pairs details...
genie3 (5%)
  --> rfdiffusion1 (5%)		 740 8 file pairs details...
chai1 (1%)
  --> opendde (<1%)		 666 5 file pairs details...
boltzgen (3%)
  --> openfold3 (<1%)		 655 8 file pairs details...
boltzgen (3%)
  --> openfold3_ob0 (<1%)		 655 8 file pairs details...
boltzgen (3%)
  --> opendde (<1%)		 654 6 file pairs details...
chai1 (1%)
  --> esmfold2 (<1%)		 621 11 file pairs details...
esmfold2 (<1%)
  --> pxdesign (<1%)		 619 8 file pairs details...
af3_jax (<1%)
  --> protenix_v2 (<1%)		 578 11 file pairs details...
af3_jax (<1%)
  --> opendde (<1%)		 554 11 file pairs details...
boltz2 (1%)
  --> chai1 (1%)		 524 6 file pairs details...
boltzgen (3%)
  --> mosaic (2%)		 515 7 file pairs details...
af3_jax (<1%)
  --> openfold3 (<1%)		 514 9 file pairs details...
esmfold2 (<1%)
  --> mosaic (2%)		 501 6 file pairs details...
genie3 (3%)
  --> openfold3_ob0 (<1%)		 480 5 file pairs details...
genie3 (3%)
  --> openfold3 (<1%)		 480 5 file pairs details...
af3_jax (<1%)
  --> openfold3_ob0 (<1%)		 476 9 file pairs details...
af2ig (3%)
  --> opendde (<1%)		 476 4 file pairs details...
af2ig (3%)
  --> protenix_v2 (<1%)		 466 4 file pairs details...
openfold3_ob0 (<1%)
  --> rosettafold3 (1%)		 457 11 file pairs details...
openfold3 (<1%)
  --> rosettafold3 (1%)		 457 11 file pairs details...
genie3 (3%)
  --> pxdesign (<1%)		 449 7 file pairs details...
esmfold2 (<1%)
  --> rosettafold3 (1%)		 446 6 file pairs details...
protenix_v2 (<1%)
  --> rosettafold3 (1%)		 445 6 file pairs details...
atlasfold (<1%)
  --> protenix_v2 (<1%)		 445 7 file pairs details...
genie3 (3%)
  --> protenix_v2 (<1%)		 444 5 file pairs details...
af2ig (3%)
  --> pxdesign (<1%)		 444 3 file pairs details...
af3_jax (<1%)
  --> colabfold (2%)		 440 6 file pairs details...
openfold3_ob0 (<1%)
  --> protenix_v1 (1%)		 439 9 file pairs details...
openfold3 (<1%)
  --> protenix_v1 (1%)		 439 9 file pairs details...
chai1 (1%)
  --> genie3 (3%)		 436 4 file pairs details...
af3_torch (1%)
  --> opendde (<1%)		 436 4 file pairs details...
genie3 (3%)
  --> opendde (<1%)		 436 5 file pairs details...
af3_jax (<1%)
  --> pxdesign (<1%)		 436 8 file pairs details...
protenix_v1 (1%)
  --> rosettafold3 (1%)		 430 5 file pairs details...
atlasfold (<1%)
  --> opendde (<1%)		 427 6 file pairs details...
af3_torch (1%)
  --> protenix_v1 (1%)		 426 4 file pairs details...
af3_torch (1%)
  --> protenix_v2 (<1%)		 426 4 file pairs details...
chai1 (1%)
  --> rosettafold3 (1%)		 424 5 file pairs details...
chai1 (1%)
  --> colabfold (2%)		 424 5 file pairs details...
af3_torch (1%)
  --> esmfold2 (<1%)		 418 5 file pairs details...
boltz2 (<1%)
  --> genie3 (3%)		 418 4 file pairs details...
esmfold2 (<1%)
  --> protenix_v1 (1%)		 416 4 file pairs details...
common (<1%)
  --> protenix_v1 (1%)		 406 9 file pairs details...
atlasfold (<1%)
  --> esmfold2 (<1%)		 403 6 file pairs details...
af3_torch (1%)
  --> colabfold (2%)		 402 4 file pairs details...
af3_torch (1%)
  --> openfold3_ob0 (<1%)		 400 4 file pairs details...
af3_torch (1%)
  --> openfold3 (<1%)		 400 4 file pairs details...
genie3 (3%)
  --> rosettafold3 (1%)		 398 3 file pairs details...
esmfold2 (<1%)
  --> genie3 (3%)		 398 3 file pairs details...
colabfold (2%)
  --> esmfold2 (<1%)		 396 4 file pairs details...
enformer (8%)
  --> enformer_deepmind (8%)		 396 6 file pairs details...
af3_torch (1%)
  --> genie3 (3%)		 394 3 file pairs details...
af2ig (3%)
  --> protenix_v1 (1%)		 394 3 file pairs details...
af3_torch (1%)
  --> rosettafold3 (1%)		 394 3 file pairs details...
af2ig (3%)
  --> esmfold2 (<1%)		 394 3 file pairs details...
af2ig (3%)
  --> af3_torch (1%)		 394 3 file pairs details...
genie3 (3%)
  --> protenix_v1 (1%)		 394 3 file pairs details...
af2ig (3%)
  --> rosettafold3 (1%)		 394 3 file pairs details...
af2ig (3%)
  --> genie3 (3%)		 394 3 file pairs details...
opendde (<1%)
  --> rosettafold3 (1%)		 394 3 file pairs details...
af3_jax (<1%)
  --> chai1 (1%)		 388 3 file pairs details...
colabfold (2%)
  --> protenix_v2 (<1%)		 388 3 file pairs details...
atlasfold (<1%)
  --> boltz2 (<1%)		 385 5 file pairs details...
af2ig (3%)
  --> openfold3_ob0 (<1%)		 384 3 file pairs details...
colabfold (2%)
  --> common (<1%)		 384 5 file pairs details...
colabfold (2%)
  --> openfold3 (<1%)		 384 3 file pairs details...
af3_jax (<1%)
  --> protenix_v1 (1%)		 384 3 file pairs details...
af3_torch (1%)
  --> chai1 (1%)		 384 3 file pairs details...
af2ig (3%)
  --> af3_jax (<1%)		 384 3 file pairs details...
boltz2 (<1%)
  --> colabfold (2%)		 384 3 file pairs details...
af3_jax (<1%)
  --> rosettafold3 (1%)		 384 3 file pairs details...
chai1 (1%)
  --> protenix_v1 (1%)		 384 3 file pairs details...
af3_jax (<1%)
  --> genie3 (3%)		 384 3 file pairs details...
colabfold (2%)
  --> opendde (<1%)		 384 3 file pairs details...
af3_jax (<1%)
  --> esmfold2 (<1%)		 384 3 file pairs details...
af2ig (3%)
  --> chai1 (1%)		 384 3 file pairs details...
af3_torch (1%)
  --> boltz2 (<1%)		 384 3 file pairs details...
boltz2 (<1%)
  --> rosettafold3 (1%)		 384 3 file pairs details...
af2ig (3%)
  --> boltz2 (<1%)		 384 3 file pairs details...
boltz2 (<1%)
  --> protenix_v1 (1%)		 384 3 file pairs details...
colabfold (2%)
  --> genie3 (3%)		 384 3 file pairs details...
colabfold (2%)
  --> rosettafold3 (1%)		 384 3 file pairs details...
af2ig (3%)
  --> openfold3 (<1%)		 384 3 file pairs details...
colabfold (2%)
  --> openfold3_ob0 (<1%)		 384 3 file pairs details...
colabfold (2%)
  --> protenix_v1 (1%)		 384 3 file pairs details...
af3_jax (<1%)
  --> boltz2 (<1%)		 384 3 file pairs details...
caliby (1%)
  --> openfold3 (<1%)		 381 9 file pairs details...
caliby (1%)
  --> openfold3_ob0 (<1%)		 381 9 file pairs details...
openfold3_ob0 (<1%)
  --> rfdiffusion3 (2%)		 376 14 file pairs details...
openfold3 (<1%)
  --> rfdiffusion3 (2%)		 376 14 file pairs details...
common (<1%)
  --> pxdesign (<1%)		 374 5 file pairs details...
caliby (1%)
  --> colabdesign (2%)		 372 4 file pairs details...
af2ig (3%)
  --> common (<1%)		 372 4 file pairs details...
boltzgen (2%)
  --> chai1 (1%)		 364 4 file pairs details...
caliby (1%)
  --> rosettafold3 (1%)		 364 4 file pairs details...
mosaic (1%)
  --> openfold3 (<1%)		 363 8 file pairs details...
colabdesign (2%)
  --> openfold3_ob0 (<1%)		 363 8 file pairs details...
colabdesign (2%)
  --> openfold3 (<1%)		 363 8 file pairs details...
mosaic (1%)
  --> openfold3_ob0 (<1%)		 363 8 file pairs details...
common (<1%)
  --> mosaic (1%)		 360 4 file pairs details...
af3_torch (1%)
  --> common (<1%)		 356 4 file pairs details...
esmfold2 (<1%)
  --> rfdiffusion3 (2%)		 355 5 file pairs details...
caliby (1%)
  --> rfdiffusion3 (2%)		 355 5 file pairs details...
colabdesign (2%)
  --> mosaic (1%)		 350 4 file pairs details...
caliby (1%)
  --> mosaic (1%)		 348 4 file pairs details...
colabdesign (2%)
  --> protenix_v1 (1%)		 348 3 file pairs details...
ef2inv (1%)
  --> esm_if1 (10%)		 348 3 file pairs details...
common (<1%)
  --> rfdiffusion3 (2%)		 347 6 file pairs details...
caliby (1%)
  --> proteinmpnn (3%)		 344 3 file pairs details...
colabdesign (2%)
  --> rosettafold3 (1%)		 344 4 file pairs details...
protenix_v2 (<1%)
  --> rfdiffusion3 (2%)		 343 4 file pairs details...
colabdesign (2%)
  --> protenix_v2 (<1%)		 342 4 file pairs details...
caliby (1%)
  --> common (<1%)		 342 4 file pairs details...
caliby (1%)
  --> chai1 (<1%)		 342 4 file pairs details...
caliby (1%)
  --> protenix_v2 (<1%)		 342 4 file pairs details...
mosaic (1%)
  --> protenix_v2 (<1%)		 342 4 file pairs details...
common (<1%)
  --> rosettafold3 (1%)		 342 5 file pairs details...
colabdesign (2%)
  --> ef2inv (1%)		 342 3 file pairs details...
colabdesign (2%)
  --> rfdiffusion3 (2%)		 341 4 file pairs details...
mosaic (1%)
  --> rfdiffusion3 (2%)		 341 4 file pairs details...
pxdesign (<1%)
  --> rfdiffusion3 (2%)		 341 4 file pairs details...
mosaic (1%)
  --> pxdesign (<1%)		 340 3 file pairs details...
chai1 (<1%)
  --> rfdiffusion1 (2%)		 340 4 file pairs details...
colabdesign (2%)
  --> esmfold2 (<1%)		 338 3 file pairs details...
colabdesign (2%)
  --> pxdesign (<1%)		 338 3 file pairs details...
protenix_v1 (1%)
  --> rfdiffusion3 (2%)		 337 4 file pairs details...
caliby (1%)
  --> pxdesign (<1%)		 336 3 file pairs details...
pxdesign (<1%)
  --> rosettafold3 (1%)		 336 4 file pairs details...
caliby (1%)
  --> esmfold2 (<1%)		 336 3 file pairs details...
mosaic (1%)
  --> rosettafold3 (1%)		 336 4 file pairs details...
common (<1%)
  --> opendde (<1%)		 334 4 file pairs details...
atlasfold (<1%)
  --> boltzgen (1%)		 334 4 file pairs details...
chai1 (<1%)
  --> mosaic (1%)		 334 4 file pairs details...
boltzgen (1%)
  --> esmfold2 (<1%)		 334 4 file pairs details...
caliby (1%)
  --> protenix_v1 (1%)		 334 3 file pairs details...
boltzgen (1%)
  --> proteinmpnn (3%)		 332 4 file pairs details...
boltzgen (1%)
  --> caliby (1%)		 330 3 file pairs details...
chai1 (<1%)
  --> colabdesign (2%)		 330 4 file pairs details...
af3_jax (<1%)
  --> common (<1%)		 330 4 file pairs details...
colabdesign (1%)
  --> rfdiffusion1 (2%)		 328 3 file pairs details...
mosaic (1%)
  --> protenix_v1 (1%)		 326 3 file pairs details...
atlasfold (<1%)
  --> chai1 (<1%)		 326 3 file pairs details...
atlasfold (<1%)
  --> pxdesign (<1%)		 324 3 file pairs details...
atlasfold (<1%)
  --> openfold3 (<1%)		 324 3 file pairs details...
atlasfold (<1%)
  --> openfold3_ob0 (<1%)		 324 3 file pairs details...
atlasfold (<1%)
  --> mosaic (1%)		 322 3 file pairs details...
complexa (6%)
  --> esm_if1 (9%)		 320 3 file pairs details...
af3_torch (1%)
  --> pxdesign (<1%)		 320 3 file pairs details...
boltzgen (1%)
  --> rosettafold3 (1%)		 320 3 file pairs details...
complexa (6%)
  --> proteinmpnn (3%)		 320 3 file pairs details...
chai1 (<1%)
  --> rfdiffusion3 (2%)		 318 3 file pairs details...
common (<1%)
  --> esm_if1 (9%)		 318 3 file pairs details...
boltzgen (1%)
  --> esm_if1 (9%)		 318 3 file pairs details...
boltzgen (1%)
  --> rfdiffusion3 (2%)		 318 3 file pairs details...
esm_if1 (9%)
  --> protenix_v2 (<1%)		 318 3 file pairs details...
ef2inv (1%)
  --> protenix_v1 (1%)		 318 3 file pairs details...
chai1 (<1%)
  --> esm_if1 (9%)		 318 3 file pairs details...
proteinmpnn (3%)
  --> pxdesign (<1%)		 316 3 file pairs details...
caliby (1%)
  --> rfdiffusion1 (2%)		 316 3 file pairs details...
mosaic (1%)
  --> rfdiffusion1 (2%)		 316 3 file pairs details...
boltz2 (<1%)
  --> caliby (1%)		 316 3 file pairs details...
openfold3 (<1%)
  --> proteinmpnn (3%)		 316 3 file pairs details...
boltz2 (<1%)
  --> rfdiffusion1 (2%)		 316 3 file pairs details...
colabdesign (1%)
  --> genie3 (2%)		 316 3 file pairs details...
protenix_v2 (<1%)
  --> rfdiffusion1 (2%)		 316 3 file pairs details...
openfold3_ob0 (<1%)
  --> proteinmpnn (3%)		 316 3 file pairs details...
proteinmpnn (3%)
  --> rosettafold3 (1%)		 316 3 file pairs details...
esmfold2 (<1%)
  --> rfdiffusion1 (2%)		 316 3 file pairs details...
proteinmpnn (3%)
  --> protenix_v2 (<1%)		 316 3 file pairs details...
boltz2 (<1%)
  --> colabdesign (1%)		 316 3 file pairs details...
boltz2 (<1%)
  --> ef2inv (1%)		 304 2 file pairs details...
opendde (<1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
colabfold (1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
esm_if1 (8%)
  --> openfold3 (<1%)		 304 2 file pairs details...
af2ig (2%)
  --> gpnstar (4%)		 304 2 file pairs details...
complexa (6%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
af3_jax (<1%)
  --> colabdesign (1%)		 304 2 file pairs details...
boltzgen (1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
atlasfold (<1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
caliby (1%)
  --> colabfold (1%)		 304 2 file pairs details...
esm_if1 (8%)
  --> mosaic (1%)		 304 2 file pairs details...
gpnstar (4%)
  --> openfold3_ob0 (<1%)		 304 2 file pairs details...
complexa (6%)
  --> protenix_v2 (<1%)		 304 2 file pairs details...
gpnstar (4%)
  --> protenix_v1 (1%)		 304 2 file pairs details...
chai1 (<1%)
  --> complexa (6%)		 304 2 file pairs details...
boltzgen (1%)
  --> colabfold (1%)		 304 2 file pairs details...
boltz2 (<1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
ef2inv (1%)
  --> opendde (<1%)		 304 2 file pairs details...
af3_torch (1%)
  --> gpnstar (4%)		 304 2 file pairs details...
esmfold2 (<1%)
  --> gpnstar (4%)		 304 2 file pairs details...
ef2inv (1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
common (<1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
colabfold (1%)
  --> mosaic (1%)		 304 2 file pairs details...
caliby (1%)
  --> esm_if1 (8%)		 304 2 file pairs details...
genie3 (2%)
  --> gpnstar (4%)		 304 2 file pairs details...
ef2inv (1%)
  --> pxdesign (<1%)		 304 2 file pairs details...
esm_if1 (8%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
af3_jax (<1%)
  --> complexa (6%)		 304 2 file pairs details...
atlasfold (<1%)
  --> ef2inv (1%)		 304 2 file pairs details...
openfold3 (<1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
gpnstar (4%)
  --> rosettafold3 (1%)		 304 2 file pairs details...
colabdesign (1%)
  --> complexa (6%)		 304 2 file pairs details...
af3_jax (<1%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
colabfold (1%)
  --> esm_if1 (8%)		 304 2 file pairs details...
boltzgen (1%)
  --> common (<1%)		 304 2 file pairs details...
complexa (6%)
  --> esmfold2 (<1%)		 304 2 file pairs details...
caliby (1%)
  --> ef2inv (1%)		 304 2 file pairs details...
esm_if1 (8%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
af3_torch (1%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
boltzgen (1%)
  --> ef2inv (1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> common (<1%)		 304 2 file pairs details...
esm_if1 (8%)
  --> opendde (<1%)		 304 2 file pairs details...
af3_torch (1%)
  --> complexa (6%)		 304 2 file pairs details...
colabfold (1%)
  --> ef2inv (1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> esm_if1 (8%)		 304 2 file pairs details...
complexa (6%)
  --> rosettafold3 (1%)		 304 2 file pairs details...
colabdesign (1%)
  --> gpnstar (4%)		 304 2 file pairs details...
genie3 (2%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
complexa (6%)
  --> genie3 (2%)		 304 2 file pairs details...
common (<1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
ef2inv (1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
esm_if1 (8%)
  --> pxdesign (<1%)		 304 2 file pairs details...
mosaic (1%)
  --> opendde (<1%)		 304 2 file pairs details...
af3_jax (<1%)
  --> gpnstar (4%)		 304 2 file pairs details...
atlasfold (<1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
boltz2 (<1%)
  --> esm_if1 (8%)		 304 2 file pairs details...
ef2inv (1%)
  --> openfold3 (<1%)		 304 2 file pairs details...
colabfold (1%)
  --> pxdesign (<1%)		 304 2 file pairs details...
caliby (1%)
  --> opendde (<1%)		 304 2 file pairs details...
af2ig (2%)
  --> complexa (6%)		 304 2 file pairs details...
gpnstar (4%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
atlasfold (<1%)
  --> colabfold (1%)		 304 2 file pairs details...
pxdesign (<1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
complexa (6%)
  --> gpnstar (4%)		 304 2 file pairs details...
af2ig (2%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
complexa (6%)
  --> protenix_v1 (1%)		 304 2 file pairs details...
proteinmpnn (3%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
chai1 (<1%)
  --> gpnstar (4%)		 304 2 file pairs details...
af3_torch (1%)
  --> colabdesign (1%)		 304 2 file pairs details...
ef2inv (1%)
  --> mosaic (1%)		 304 2 file pairs details...
boltz2 (<1%)
  --> common (<1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> caliby (1%)		 304 2 file pairs details...
complexa (6%)
  --> openfold3_ob0 (<1%)		 304 2 file pairs details...
gpnstar (4%)
  --> protenix_v2 (<1%)		 304 2 file pairs details...
colabfold (1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
opendde (<1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
af3_torch (1%)
  --> ef2inv (1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> protenix_v1 (1%)		 304 2 file pairs details...
af2ig (2%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
gpnstar (4%)
  --> opendde (<1%)		 304 2 file pairs details...
af3_jax (<1%)
  --> mosaic (1%)		 304 2 file pairs details...
boltzgen (1%)
  --> complexa (6%)		 304 2 file pairs details...
gpnstar (4%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
caliby (1%)
  --> complexa (6%)		 304 2 file pairs details...
complexa (6%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
ef2inv (1%)
  --> genie3 (2%)		 304 2 file pairs details...
af2ig (2%)
  --> atlasfold (<1%)		 304 2 file pairs details...
gpnstar (4%)
  --> pxdesign (<1%)		 304 2 file pairs details...
proteinmpnn (3%)
  --> protenix_v1 (1%)		 304 2 file pairs details...
af3_jax (<1%)
  --> esm_if1 (8%)		 304 2 file pairs details...
colabfold (1%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
ef2inv (1%)
  --> rosettafold3 (1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> gpnstar (4%)		 304 2 file pairs details...
colabdesign (1%)
  --> esm_if1 (8%)		 304 2 file pairs details...
rfdiffusion1 (2%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
colabfold (1%)
  --> complexa (6%)		 304 2 file pairs details...
af3_jax (<1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
esmfold2 (<1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
ef2inv (1%)
  --> gpnstar (4%)		 304 2 file pairs details...
atlasfold (<1%)
  --> rosettafold3 (1%)		 304 2 file pairs details...
chai1 (<1%)
  --> common (<1%)		 304 2 file pairs details...
af3_torch (1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
boltz2 (<1%)
  --> gpnstar (4%)		 304 2 file pairs details...
af2ig (2%)
  --> ef2inv (1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> genie3 (2%)		 304 2 file pairs details...
esm_if1 (8%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
complexa (6%)
  --> openfold3 (<1%)		 304 2 file pairs details...
ef2inv (1%)
  --> openfold3_ob0 (<1%)		 304 2 file pairs details...
af3_jax (<1%)
  --> boltzgen (1%)		 304 2 file pairs details...
complexa (6%)
  --> mosaic (1%)		 304 2 file pairs details...
boltzgen (1%)
  --> colabdesign (1%)		 304 2 file pairs details...
af3_torch (1%)
  --> atlasfold (<1%)		 304 2 file pairs details...
genie3 (2%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
af3_jax (<1%)
  --> caliby (1%)		 304 2 file pairs details...
common (<1%)
  --> complexa (6%)		 304 2 file pairs details...
af3_torch (1%)
  --> caliby (1%)		 304 2 file pairs details...
boltz2 (<1%)
  --> complexa (6%)		 304 2 file pairs details...
ef2inv (1%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
af3_jax (<1%)
  --> atlasfold (<1%)		 304 2 file pairs details...
rfdiffusion1 (2%)
  --> rosettafold3 (1%)		 304 2 file pairs details...
af2ig (2%)
  --> esm_if1 (8%)		 304 2 file pairs details...
gpnstar (4%)
  --> openfold3 (<1%)		 304 2 file pairs details...
boltz2 (<1%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
complexa (6%)
  --> ef2inv (1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> colabdesign (1%)		 304 2 file pairs details...
af3_torch (1%)
  --> boltzgen (1%)		 304 2 file pairs details...
esm_if1 (8%)
  --> gpnstar (4%)		 304 2 file pairs details...
colabdesign (1%)
  --> opendde (<1%)		 304 2 file pairs details...
chai1 (<1%)
  --> ef2inv (1%)		 304 2 file pairs details...
af3_jax (<1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
caliby (1%)
  --> genie3 (2%)		 304 2 file pairs details...
common (<1%)
  --> gpnstar (4%)		 304 2 file pairs details...
esm_if1 (8%)
  --> protenix_v1 (1%)		 304 2 file pairs details...
af2ig (2%)
  --> mosaic (1%)		 304 2 file pairs details...
boltzgen (1%)
  --> genie3 (2%)		 304 2 file pairs details...
ef2inv (1%)
  --> protenix_v2 (<1%)		 304 2 file pairs details...
colabdesign (1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
af3_torch (1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
esm_if1 (8%)
  --> openfold3_ob0 (<1%)		 304 2 file pairs details...
gpnstar (4%)
  --> mosaic (1%)		 304 2 file pairs details...
protenix_v1 (1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
opendde (<1%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
af2ig (2%)
  --> boltzgen (1%)		 304 2 file pairs details...
caliby (1%)
  --> gpnstar (4%)		 304 2 file pairs details...
common (<1%)
  --> genie3 (2%)		 304 2 file pairs details...
esm_if1 (8%)
  --> esmfold2 (<1%)		 304 2 file pairs details...
openfold3_ob0 (<1%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
boltzgen (1%)
  --> gpnstar (4%)		 304 2 file pairs details...
proteinmpnn (3%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
complexa (6%)
  --> opendde (<1%)		 304 2 file pairs details...
af2ig (2%)
  --> caliby (1%)		 304 2 file pairs details...
genie3 (2%)
  --> mosaic (1%)		 304 2 file pairs details...
af3_torch (1%)
  --> esm_if1 (8%)		 304 2 file pairs details...
af2ig (2%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
atlasfold (<1%)
  --> complexa (6%)		 304 2 file pairs details...
colabfold (1%)
  --> gpnstar (4%)		 304 2 file pairs details...
boltzgen (1%)
  --> protenix_v1 (1%)		 304 2 file pairs details...
esm_if1 (8%)
  --> rosettafold3 (1%)		 304 2 file pairs details...
gpnstar (4%)
  --> rfdiffusion1 (2%)		 304 2 file pairs details...
af3_jax (<1%)
  --> ef2inv (1%)		 304 2 file pairs details...
atlasfold (<1%)
  --> rfdiffusion3 (2%)		 304 2 file pairs details...
complexa (6%)
  --> pxdesign (<1%)		 304 2 file pairs details...
chai1 (<1%)
  --> proteinmpnn (3%)		 304 2 file pairs details...
esm_if1 (8%)
  --> genie3 (2%)		 304 2 file pairs details...
af3_torch (1%)
  --> mosaic (1%)		 304 2 file pairs details...
common (<1%)
  --> esmc (2%)		 288 4 file pairs details...
enformer (5%)
  --> flashzoi (2%)		 258 4 file pairs details...
esmc (1%)
  --> esmfold2 (<1%)		 252 3 file pairs details...
esmc (1%)
  --> evo2 (1%)		 235 4 file pairs details...
caliby (<1%)
  --> chrombpnet (1%)		 234 3 file pairs details...
chrombpnet (1%)
  --> flashzoi (2%)		 234 4 file pairs details...
caliby (<1%)
  --> esmc (1%)		 223 4 file pairs details...
common (<1%)
  --> enformer_deepmind (4%)		 212 7 file pairs details...
chrombpnet (1%)
  --> esmc (1%)		 211 3 file pairs details...
esmc (1%)
  --> rosettafold3 (<1%)		 209 4 file pairs details...
common (<1%)
  --> enformer (4%)		 208 5 file pairs details...
chrombpnet (1%)
  --> openfold3 (<1%)		 207 8 file pairs details...
chrombpnet (1%)
  --> openfold3_ob0 (<1%)		 207 8 file pairs details...
caliby (<1%)
  --> flashzoi (2%)		 206 3 file pairs details...
evo2 (<1%)
  --> gpnstar (3%)		 202 2 file pairs details...
colabdesign (1%)
  --> e1 (1%)		 200 3 file pairs details...
chrombpnet (1%)
  --> e1 (1%)		 200 2 file pairs details...
caliby (<1%)
  --> e1 (1%)		 196 2 file pairs details...
esmc (1%)
  --> mosaic (<1%)		 196 3 file pairs details...
enformer (4%)
  --> esmc (1%)		 196 4 file pairs details...
colabdesign (1%)
  --> flashzoi (2%)		 196 2 file pairs details...
chrombpnet (1%)
  --> colabdesign (1%)		 196 2 file pairs details...
enformer (4%)
  --> openfold3_ob0 (<1%)		 195 7 file pairs details...
enformer (4%)
  --> openfold3 (<1%)		 195 7 file pairs details...
enformer_deepmind (4%)
  --> openfold3_ob0 (<1%)		 195 7 file pairs details...
enformer_deepmind (4%)
  --> openfold3 (<1%)		 195 7 file pairs details...
flashzoi (2%)
  --> openfold3_ob0 (<1%)		 195 7 file pairs details...
e1 (1%)
  --> openfold3 (<1%)		 195 7 file pairs details...
flashzoi (2%)
  --> openfold3 (<1%)		 195 7 file pairs details...
e1 (1%)
  --> openfold3_ob0 (<1%)		 195 7 file pairs details...
esmc (1%)
  --> openfold3_ob0 (<1%)		 195 7 file pairs details...
esmc (1%)
  --> openfold3 (<1%)		 195 7 file pairs details...
common (<1%)
  --> e1 (1%)		 194 5 file pairs details...
e1 (1%)
  --> esmc (1%)		 194 4 file pairs details...
colabdesign (1%)
  --> esmc (1%)		 194 4 file pairs details...
chrombpnet (1%)
  --> rosettafold3 (<1%)		 194 3 file pairs details...
flashzoi (2%)
  --> rfdiffusion3 (1%)		 193 4 file pairs details...
chrombpnet (1%)
  --> rfdiffusion3 (1%)		 193 4 file pairs details...
chai1 (<1%)
  --> e1 (1%)		 190 4 file pairs details...
e1 (1%)
  --> flashzoi (2%)		 188 2 file pairs details...
flashzoi (2%)
  --> rosettafold3 (<1%)		 188 4 file pairs details...
common (<1%)
  --> evo2 (<1%)		 186 2 file pairs details...
enformer (3%)
  --> mosaic (<1%)		 182 3 file pairs details...
esmc (1%)
  --> flashzoi (2%)		 182 3 file pairs details...
e1 (1%)
  --> esmfold2 (<1%)		 182 3 file pairs details...
enformer_deepmind (4%)
  --> esmc (1%)		 182 3 file pairs details...
atlasfold (<1%)
  --> esmc (1%)		 182 3 file pairs details...
enformer (3%)
  --> esmfold2 (<1%)		 182 3 file pairs details...
e1 (1%)
  --> rosettafold3 (<1%)		 180 4 file pairs details...
flashzoi (2%)
  --> protenix_v1 (<1%)		 180 2 file pairs details...
chrombpnet (1%)
  --> protenix_v1 (<1%)		 180 2 file pairs details...
chai1 (<1%)
  --> evo2 (<1%)		 178 2 file pairs details...
e1 (1%)
  --> evo2 (<1%)		 177 2 file pairs details...
common (<1%)
  --> flashzoi (1%)		 176 3 file pairs details...
e1 (1%)
  --> protenix_v2 (<1%)		 176 3 file pairs details...
chrombpnet (1%)
  --> common (<1%)		 176 3 file pairs details...
borzoi (4%)
  --> openfold3 (<1%)		 176 4 file pairs details...
esmc (1%)
  --> protenix_v2 (<1%)		 174 3 file pairs details...
chai1 (<1%)
  --> esmc (1%)		 174 3 file pairs details...
e1 (<1%)
  --> rfdiffusion3 (1%)		 173 3 file pairs details...
esmc (1%)
  --> rfdiffusion3 (1%)		 173 3 file pairs details...
enformer (3%)
  --> rfdiffusion3 (1%)		 173 3 file pairs details...
enformer_deepmind (3%)
  --> rfdiffusion3 (1%)		 173 3 file pairs details...
evo2 (<1%)
  --> rfdiffusion1 (1%)		 172 2 file pairs details...
e1 (<1%)
  --> protenix_v1 (<1%)		 172 2 file pairs details...
borzoi (4%)
  --> openfold3_ob0 (<1%)		 172 4 file pairs details...
enformer_deepmind (3%)
  --> pxdesign (<1%)		 170 2 file pairs details...
colabdesign (1%)
  --> enformer_deepmind (3%)		 170 2 file pairs details...
enformer_deepmind (3%)
  --> mosaic (<1%)		 170 2 file pairs details...
enformer (3%)
  --> pxdesign (<1%)		 170 2 file pairs details...
colabdesign (1%)
  --> enformer (3%)		 170 2 file pairs details...
esmfold2 (<1%)
  --> flashzoi (1%)		 170 2 file pairs details...
flashzoi (1%)
  --> mosaic (<1%)		 170 2 file pairs details...
esmc (1%)
  --> pxdesign (<1%)		 170 2 file pairs details...
enformer_deepmind (3%)
  --> esmfold2 (<1%)		 170 2 file pairs details...
e1 (<1%)
  --> mosaic (<1%)		 170 2 file pairs details...
e1 (<1%)
  --> enformer (3%)		 170 2 file pairs details...
flashzoi (1%)
  --> pxdesign (<1%)		 170 2 file pairs details...
enformer_deepmind (3%)
  --> flashzoi (1%)		 170 2 file pairs details...
e1 (<1%)
  --> pxdesign (<1%)		 170 2 file pairs details...
e1 (<1%)
  --> enformer_deepmind (3%)		 170 2 file pairs details...
chrombpnet (1%)
  --> enformer (3%)		 170 2 file pairs details...
chrombpnet (1%)
  --> mosaic (<1%)		 170 2 file pairs details...
chrombpnet (1%)
  --> enformer_deepmind (3%)		 170 2 file pairs details...
chrombpnet (1%)
  --> pxdesign (<1%)		 170 2 file pairs details...
chrombpnet (1%)
  --> esmfold2 (<1%)		 170 2 file pairs details...
caliby (<1%)
  --> enformer (3%)		 168 2 file pairs details...
caliby (<1%)
  --> enformer_deepmind (3%)		 168 2 file pairs details...
enformer_deepmind (3%)
  --> rosettafold3 (<1%)		 168 3 file pairs details...
chai1 (<1%)
  --> flashzoi (1%)		 168 3 file pairs details...
enformer (3%)
  --> rosettafold3 (<1%)		 168 3 file pairs details...
af2ig (1%)
  --> chrombpnet (1%)		 168 3 file pairs details...
enformer (3%)
  --> protenix_v2 (<1%)		 162 2 file pairs details...
enformer_deepmind (3%)
  --> protenix_v2 (<1%)		 162 2 file pairs details...
flashzoi (1%)
  --> protenix_v2 (<1%)		 162 2 file pairs details...
chai1 (<1%)
  --> chrombpnet (1%)		 162 2 file pairs details...
chrombpnet (1%)
  --> protenix_v2 (<1%)		 162 2 file pairs details...
enformer (3%)
  --> protenix_v1 (<1%)		 158 2 file pairs details...
enformer_deepmind (3%)
  --> protenix_v1 (<1%)		 158 2 file pairs details...
esmc (1%)
  --> protenix_v1 (<1%)		 158 2 file pairs details...
e1 (<1%)
  --> rfdiffusion1 (1%)		 155 2 file pairs details...
boltzgen (<1%)
  --> e1 (<1%)		 152 2 file pairs details...
borzoi (3%)
  --> common (<1%)		 152 2 file pairs details...
boltzgen (<1%)
  --> flashzoi (1%)		 150 2 file pairs details...
boltzgen (<1%)
  --> chrombpnet (1%)		 150 2 file pairs details...
borzoi (3%)
  --> opendde (<1%)		 150 2 file pairs details...
esmc (1%)
  --> rfdiffusion1 (1%)		 148 2 file pairs details...
borzoi (3%)
  --> rfdiffusion1 (1%)		 148 2 file pairs details...
borzoi (3%)
  --> genie3 (1%)		 148 2 file pairs details...
evo2 (<1%)
  --> genie3 (1%)		 148 2 file pairs details...
borzoi (3%)
  --> e1 (<1%)		 148 2 file pairs details...
boltz2 (<1%)
  --> esmc (1%)		 148 2 file pairs details...
chrombpnet (1%)
  --> opendde (<1%)		 136 1 file pair details...
boltzgen (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
borzoi (3%)
  --> esmc (1%)		 136 1 file pair details...
ef2inv (<1%)
  --> flashzoi (1%)		 136 1 file pair details...
chrombpnet (1%)
  --> gpnstar (2%)		 136 1 file pair details...
boltzgen (<1%)
  --> borzoi (3%)		 136 1 file pair details...
flashzoi (1%)
  --> rfdiffusion1 (<1%)		 136 1 file pair details...
enformer_deepmind (3%)
  --> esm_if1 (3%)		 136 1 file pair details...
boltzgen (<1%)
  --> esmc (1%)		 136 1 file pair details...
borzoi (3%)
  --> evo2 (<1%)		 136 1 file pair details...
colabfold (<1%)
  --> flashzoi (1%)		 136 1 file pair details...
af3_torch (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
e1 (<1%)
  --> genie3 (1%)		 136 1 file pair details...
evo2 (<1%)
  --> proteinmpnn (1%)		 136 1 file pair details...
borzoi (3%)
  --> rosettafold3 (<1%)		 136 1 file pair details...
af2ig (1%)
  --> esmc (1%)		 136 1 file pair details...
esmfold2 (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
af2ig (1%)
  --> borzoi (3%)		 136 1 file pair details...
colabfold (<1%)
  --> e1 (<1%)		 136 1 file pair details...
complexa (2%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
flashzoi (1%)
  --> genie3 (1%)		 136 1 file pair details...
af3_jax (<1%)
  --> chrombpnet (1%)		 136 1 file pair details...
af2ig (1%)
  --> evo2 (<1%)		 136 1 file pair details...
atlasfold (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
chai1 (<1%)
  --> enformer (2%)		 136 1 file pair details...
borzoi (3%)
  --> esmfold2 (<1%)		 136 1 file pair details...
esmc (1%)
  --> proteinmpnn (1%)		 136 1 file pair details...
boltz2 (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
e1 (<1%)
  --> ef2inv (<1%)		 136 1 file pair details...
borzoi (3%)
  --> proteinmpnn (1%)		 136 1 file pair details...
evo2 (<1%)
  --> rosettafold3 (<1%)		 136 1 file pair details...
borzoi (3%)
  --> ef2inv (<1%)		 136 1 file pair details...
e1 (<1%)
  --> proteinmpnn (1%)		 136 1 file pair details...
enformer (2%)
  --> esm_if1 (3%)		 136 1 file pair details...
colabfold (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
ef2inv (<1%)
  --> esmc (1%)		 136 1 file pair details...
af3_torch (<1%)
  --> enformer (2%)		 136 1 file pair details...
borzoi (3%)
  --> flashzoi (1%)		 136 1 file pair details...
evo2 (<1%)
  --> flashzoi (1%)		 136 1 file pair details...
borzoi (3%)
  --> colabfold (<1%)		 136 1 file pair details...
af2ig (1%)
  --> e1 (<1%)		 136 1 file pair details...
ef2inv (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
colabfold (<1%)
  --> esmc (1%)		 136 1 file pair details...
af2ig (1%)
  --> flashzoi (1%)		 136 1 file pair details...
atlasfold (<1%)
  --> enformer (2%)		 136 1 file pair details...
chai1 (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
evo2 (<1%)
  --> rfdiffusion3 (1%)		 136 1 file pair details...
esmc (1%)
  --> genie3 (1%)		 136 1 file pair details...
boltz2 (<1%)
  --> enformer (2%)		 136 1 file pair details...
flashzoi (1%)
  --> proteinmpnn (1%)		 136 1 file pair details...
borzoi (3%)
  --> rfdiffusion3 (1%)		 136 1 file pair details...
complexa (2%)
  --> enformer (2%)		 136 1 file pair details...
boltzgen (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
evo2 (<1%)
  --> pxdesign (<1%)		 136 1 file pair details...
borzoi (3%)
  --> esm_if1 (3%)		 136 1 file pair details...
ef2inv (<1%)
  --> enformer (2%)		 136 1 file pair details...
af3_torch (<1%)
  --> esmc (1%)		 136 1 file pair details...
enformer_deepmind (3%)
  --> evo2 (<1%)		 136 1 file pair details...
af3_torch (<1%)
  --> borzoi (3%)		 136 1 file pair details...
esm_if1 (3%)
  --> esmc (1%)		 136 1 file pair details...
af3_torch (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
colabfold (<1%)
  --> enformer (2%)		 136 1 file pair details...
borzoi (3%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
borzoi (3%)
  --> pxdesign (<1%)		 136 1 file pair details...
enformer (2%)
  --> rfdiffusion1 (<1%)		 136 1 file pair details...
esm_if1 (3%)
  --> evo2 (<1%)		 136 1 file pair details...
complexa (2%)
  --> evo2 (<1%)		 136 1 file pair details...
atlasfold (<1%)
  --> borzoi (3%)		 136 1 file pair details...
enformer (2%)
  --> genie3 (1%)		 136 1 file pair details...
colabdesign (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
enformer_deepmind (3%)
  --> proteinmpnn (1%)		 136 1 file pair details...
boltz2 (<1%)
  --> borzoi (3%)		 136 1 file pair details...
borzoi (3%)
  --> colabdesign (<1%)		 136 1 file pair details...
complexa (2%)
  --> esmc (1%)		 136 1 file pair details...
boltz2 (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
borzoi (3%)
  --> complexa (2%)		 136 1 file pair details...
af2ig (1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
atlasfold (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
evo2 (<1%)
  --> protenix_v2 (<1%)		 136 1 file pair details...
borzoi (3%)
  --> enformer (2%)		 136 1 file pair details...
colabfold (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
af3_torch (<1%)
  --> flashzoi (1%)		 136 1 file pair details...
complexa (2%)
  --> e1 (<1%)		 136 1 file pair details...
evo2 (<1%)
  --> protenix_v1 (<1%)		 136 1 file pair details...
borzoi (3%)
  --> mosaic (<1%)		 136 1 file pair details...
enformer_deepmind (3%)
  --> rfdiffusion1 (<1%)		 136 1 file pair details...
esm_if1 (3%)
  --> flashzoi (1%)		 136 1 file pair details...
boltzgen (<1%)
  --> enformer (2%)		 136 1 file pair details...
evo2 (<1%)
  --> mosaic (<1%)		 136 1 file pair details...
borzoi (3%)
  --> protenix_v1 (<1%)		 136 1 file pair details...
boltz2 (<1%)
  --> e1 (<1%)		 136 1 file pair details...
ef2inv (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
enformer (2%)
  --> evo2 (<1%)		 136 1 file pair details...
atlasfold (<1%)
  --> e1 (<1%)		 136 1 file pair details...
borzoi (3%)
  --> protenix_v2 (<1%)		 136 1 file pair details...
caliby (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
boltz2 (<1%)
  --> flashzoi (1%)		 136 1 file pair details...
af2ig (1%)
  --> enformer (2%)		 136 1 file pair details...
atlasfold (<1%)
  --> flashzoi (1%)		 136 1 file pair details...
borzoi (3%)
  --> chai1 (<1%)		 136 1 file pair details...
enformer_deepmind (3%)
  --> genie3 (1%)		 136 1 file pair details...
af3_torch (<1%)
  --> e1 (<1%)		 136 1 file pair details...
complexa (2%)
  --> flashzoi (1%)		 136 1 file pair details...
borzoi (3%)
  --> caliby (<1%)		 136 1 file pair details...
enformer (2%)
  --> proteinmpnn (1%)		 136 1 file pair details...
e1 (<1%)
  --> esm_if1 (3%)		 136 1 file pair details...
af3_jax (<1%)
  --> enformer (2%)		 136 1 file pair details...
enformer (2%)
  --> gpnstar (2%)		 136 1 file pair details...
enformer (2%)
  --> opendde (<1%)		 136 1 file pair details...
chrombpnet (1%)
  --> complexa (2%)		 136 1 file pair details...
af3_jax (<1%)
  --> enformer_deepmind (3%)		 136 1 file pair details...
atlasfold (<1%)
  --> chrombpnet (1%)		 136 1 file pair details...
boltz2 (<1%)
  --> chrombpnet (1%)		 136 1 file pair details...
enformer_deepmind (3%)
  --> opendde (<1%)		 136 1 file pair details...
chrombpnet (1%)
  --> esm_if1 (3%)		 136 1 file pair details...
enformer_deepmind (3%)
  --> gpnstar (2%)		 136 1 file pair details...
af3_torch (<1%)
  --> chrombpnet (1%)		 136 1 file pair details...
e1 (<1%)
  --> opendde (<1%)		 136 1 file pair details...
af3_jax (<1%)
  --> flashzoi (1%)		 136 1 file pair details...
chrombpnet (1%)
  --> genie3 (1%)		 136 1 file pair details...
e1 (<1%)
  --> gpnstar (2%)		 136 1 file pair details...
chrombpnet (1%)
  --> colabfold (<1%)		 136 1 file pair details...
chrombpnet (1%)
  --> rfdiffusion1 (<1%)		 136 1 file pair details...
flashzoi (1%)
  --> gpnstar (2%)		 136 1 file pair details...
chrombpnet (1%)
  --> ef2inv (<1%)		 136 1 file pair details...
flashzoi (1%)
  --> opendde (<1%)		 136 1 file pair details...
af3_jax (<1%)
  --> e1 (<1%)		 136 1 file pair details...
af3_jax (<1%)
  --> borzoi (3%)		 136 1 file pair details...
af3_jax (<1%)
  --> esmc (1%)		 136 1 file pair details...
chrombpnet (1%)
  --> proteinmpnn (1%)		 136 1 file pair details...
evo2 (<1%)
  --> openfold3_ob0 (<1%)		 136 1 file pair details...
af3_jax (<1%)
  --> evo2 (<1%)		 136 1 file pair details...
evo2 (<1%)
  --> opendde (<1%)		 136 1 file pair details...
borzoi (3%)
  --> gpnstar (2%)		 136 1 file pair details...
chrombpnet (1%)
  --> evo2 (<1%)		 136 1 file pair details...
esmc (1%)
  --> gpnstar (2%)		 136 1 file pair details...
borzoi (3%)
  --> chrombpnet (1%)		 136 1 file pair details...
esmc (1%)
  --> opendde (<1%)		 136 1 file pair details...
evo2 (<1%)
  --> openfold3 (<1%)		 136 1 file pair details...
flashzoi (<1%)
  --> progen2 (<1%)		 76 2 file pairs details...

Longest Duplicates
The list of 50 longest duplicates.
See data for all 20,400 duplicates...
Size#FoldersFilesLinesCode
1587 x 2 caliby/opt/forward/xattempt_addon/stock
caliby/stock/src/protpar...c/src/protpardelle/core
 32:2185 (100%)
32:2185 (100%)
 view
1544 x 2 caliby/opt/forward/xattempt_addon/fast
caliby/opt/forward/xattempt_addon/stock
 32:2133 (96%)
32:2133 (97%)
 view
1544 x 2 caliby/opt/forward/xattempt_addon/fast
caliby/stock/src/protpar...c/src/protpardelle/core
 32:2133 (96%)
32:2133 (97%)
 view
1477 x 2 openfold3/stock/src/openfold3/core/metrics
openfold3_ob0/stock/src/openfold3/core/metrics
 23:2391 (100%)
23:2391 (100%)
 view
1338 x 2 openfold3/stock/src/openfold3/core/data/resources
openfold3_ob0/stock/src/...ld3/core/data/resources
 20:1364 (100%)
20:1364 (100%)
 view
1211 x 2 opendde/stock/src/opendde/data
protenix_v2/stock/src/protenix/data
 191:1521 (87%)
203:1533 (87%)
 view
1079 x 2 pxdesign/stock/src/PXDesign/pxdesign/data
pxdesign/stock/src/Protenix/protenix/data
 37:1691 (71%)
37:1693 (70%)
 view
1033 x 2 boltz2/stock/src/boltz
mosaic/stock/src/boltz/src/boltz
 36:1414 (100%)
36:1414 (100%)
 view
915 x 2 opendde/stock/src/opendde/model/layer_norm/kernel
protenix_v2/stock/src/pr...model/layer_norm/kernel
 1:994 (100%)
1:994 (100%)
 view
898 x 2 opendde/stock/src/opendde/tfg
protenix_v2/stock/src/protenix/tfg
 42:1381 (100%)
40:1379 (100%)
 view
882 x 2 protenix_v2/stock/src/protenix/data/constraint
pxdesign/stock/src/Protenix/protenix/data
 1195:2434 (48%)
1165:2405 (48%)
 view
652 x 2 openfold3/stock/src/openfold3/core/utils
openfold3_ob0/stock/src/openfold3/core/utils
 26:1379 (100%)
26:1379 (100%)
 view
636 x 2 openfold3/stock/src/openfold3/core/utils
openfold3_ob0/stock/src/openfold3/core/utils
 26:1332 (71%)
26:1332 (69%)
 view
601 x 2 caliby/opt/forward/xattempt_addon/stock
caliby/stock/src/caliby/caliby/eval/eval_utils
 35:1040 (100%)
35:1040 (100%)
 view
594 x 2 caliby/opt/forward/xattempt_addon/stock
caliby/stock/src/caliby/...er/denoisers/seq_design
 34:1085 (100%)
34:1085 (100%)
 view
588 x 2 openfold3/stock/src/open...pipelines/preprocessing
openfold3_ob0/stock/src/...pipelines/preprocessing
 98:1022 (35%)
108:1032 (31%)
 view
585 x 2 common/opt_core/opt_core/kernels/transition/esm
ef2inv/opt/forward/ESMFO...FAST_INFERENCE_KIT_v1/k
 49:824 (100%)
49:824 (100%)
 view
570 x 2 opendde/stock/src/opendde/data/core
protenix_v2/stock/src/protenix/data/core
 43:837 (100%)
41:835 (100%)
 view
566 x 2 openfold3/stock/src/open...mitives/quality_control
openfold3_ob0/stock/src/...mitives/quality_control
 41:887 (100%)
41:887 (100%)
 view
557 x 2 openfold3/stock/src/openfold3/core/utils
openfold3_ob0/stock/src/openfold3/core/utils
 21:927 (100%)
21:927 (100%)
 view
521 x 2 openfold3/opt/openfold3_opt/cells
openfold3_ob0/opt/openfold3_ob0_opt/cells
 55:705 (100%)
55:705 (100%)
 view
516 x 2 protenix_v2/stock/src/protenix/web_service
pxdesign/stock/src/Protenix/protenix/web_service
 20:615 (100%)
20:615 (100%)
 view
511 x 2 caliby/opt/forward/xattempt_addon/fast
caliby/opt/forward/xattempt_addon/stock
 214:1066 (83%)
188:1040 (85%)
 view
511 x 2 caliby/opt/forward/xattempt_addon/fast
caliby/stock/src/caliby/caliby/eval/eval_utils
 214:1066 (83%)
188:1040 (85%)
 view
491 x 2 openfold3/opt/openfold3_opt
openfold3_ob0/opt/openfold3_ob0_opt
 47:656 (100%)
47:656 (100%)
 view
484 x 2 openfold3/stock/src/open.../data/primitives/caches
openfold3_ob0/stock/src/.../data/primitives/caches
 852:1800 (53%)
962:1910 (49%)
 view
462 x 2 opendde/stock/src/opendde/model/layer_norm/kernel
protenix_v1/opt/forward/...ln_prebuilt/patched_src
 378:874 (50%)
378:874 (50%)
 view
462 x 2 opendde/opt/forward/fast...nce/levers/LNSTREAM/src
protenix_v2/stock/src/pr...model/layer_norm/kernel
 378:874 (50%)
378:874 (50%)
 view
462 x 2 opendde/opt/forward/fast...nce/levers/LNSTREAM/src
opendde/stock/src/opendde/model/layer_norm/kernel
 378:874 (50%)
378:874 (50%)
 view
462 x 2 protenix_v1/opt/forward/...ln_prebuilt/patched_src
protenix_v2/stock/src/pr...model/layer_norm/kernel
 378:874 (50%)
378:874 (50%)
 view
462 x 2 opendde/opt/forward/fast...nce/levers/LNSTREAM/src
protenix_v1/opt/forward/...ln_prebuilt/patched_src
 378:874 (50%)
378:874 (50%)
 view
449 x 2 common/opt_core/opt_core/kernels/transition/esm
ef2inv/opt/forward/ESMFO...FAST_INFERENCE_KIT_v1/k
 38:638 (100%)
38:638 (100%)
 view
443 x 2 opendde/stock/src/opendde/data
pxdesign/stock/src/Protenix/protenix/data
 379:837 (32%)
351:809 (49%)
 view
443 x 2 protenix_v2/stock/src/protenix/data
pxdesign/stock/src/Protenix/protenix/data
 391:849 (32%)
351:809 (49%)
 view
438 x 2 openfold3/opt/openfold3_opt
openfold3_ob0/opt/openfold3_ob0_opt
 36:566 (100%)
36:566 (100%)
 view
436 x 2 caliby/opt/forward/xattempt_addon/stock
caliby/stock/src/caliby/.../seq_denoiser/denoisers
 24:670 (100%)
24:670 (100%)
 view
417 x 2 openfold3/stock/src/open...ta/primitives/structure
openfold3_ob0/stock/src/...ta/primitives/structure
 155:1078 (85%)
155:1078 (85%)
 view
412 x 2 openfold3/stock/src/openfold3/core/model/layers
openfold3_ob0/stock/src/...fold3/core/model/layers
 510:1099 (40%)
525:1114 (39%)
 view
409 x 2 protenix_v2/stock/src/protenix/data/core
pxdesign/stock/src/PXDesign/pxdesign/data
 971:1534 (19%)
855:1417 (27%)
 view
409 x 2 protenix_v2/stock/src/protenix/data/core
pxdesign/stock/src/Protenix/protenix/data
 971:1534 (19%)
857:1419 (26%)
 view
404 x 2 caliby/opt/forward/xattempt_addon/stock
caliby/stock/src/caliby/caliby
 22:729 (100%)
22:729 (100%)
 view
394 x 2 protenix_v2/stock/src/protenix/data/core
pxdesign/stock/src/Protenix/protenix/data
 23:637 (100%)
23:637 (100%)
 view
382 x 2 openfold3/opt/openfold3_opt/cells
openfold3_ob0/opt/openfold3_ob0_opt/cells
 36:484 (100%)
36:484 (100%)
 view
359 x 2 af3_jax/stock/src/src/alphafold3/constants
af3_torch/opt/forward/af...3_torch/xfold/constants
 28:428 (100%)
19:419 (100%)
 view
357 x 2 protenix_v2/stock/src/pr...ation/chain_permutation
pxdesign/stock/src/Prote...ation/chain_permutation
 22:626 (65%)
22:626 (65%)
 view
355 x 2 af3_jax/stock/src/src/alphafold3/constants
af3_torch/opt/forward/af...3_torch/xfold/constants
 29:402 (100%)
20:393 (100%)
 view
329 x 2 openfold3/opt/forward/offload/of3o
openfold3_ob0/opt/forward/offload/of3o
 419:789 (50%)
418:788 (50%)
 view
329 x 2 protenix_v2/stock/src/protenix/utils
pxdesign/stock/src/Protenix/protenix/utils
 28:530 (77%)
28:529 (72%)
 view
328 x 2 openfold3_ob0/opt/forward/offload/of3o
protenix_v2/opt/forward/PTX_TP/PTX_TP_ADDON/ptx_tp
 55:457 (100%)
70:472 (100%)
 view
328 x 2 openfold3/opt/forward/offload/of3o
protenix_v2/opt/forward/PTX_TP/PTX_TP_ADDON/ptx_tp
 56:458 (100%)
70:472 (100%)
 view
Most Frequent Duplicates
The list of 50 most frequently found duplicates.
Size#FoldersFilesLinesCode
6 x 50 openfold3/stock/src/scripts/data_preprocessing
openfold3_ob0/stock/src/scripts/data_preprocessing
openfold3/stock/src/scripts/data_preprocessing
openfold3_ob0/stock/src/scripts/data_preprocessing
openfold3_ob0/stock/src/scripts/data_preprocessing
openfold3_ob0/stock/src/scripts/data_preprocessing
openfold3/stock/src/scripts/analysis
openfold3/stock/src/scripts/data_preprocessing
openfold3_ob0/stock/src/scripts/data_preprocessing
openfold3/stock/src/scripts/data_preprocessing
...
 31:36 (1%)
250:255 (2%)
34:39 (1%)
24:29 (4%)
24:29 (4%)
31:36 (1%)
233:238 (2%)
31:36 (4%)
34:39 (1%)
121:126 (1%)
...
 view
6 x 48 protenix_v2/stock/src/protenix/data
pxdesign/stock/src/Protenix/protenix/data
opendde/stock/src/opendde/data
pxdesign/stock/src/PXDesign/pxdesign/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
...
 417:422 (<1%)
377:382 (<1%)
405:410 (<1%)
412:417 (<1%)
391:396 (<1%)
402:407 (<1%)
414:419 (<1%)
426:431 (<1%)
439:444 (<1%)
463:468 (<1%)
...
 view
6 x 40 protenix_v2/stock/src/protenix/data
pxdesign/stock/src/Protenix/protenix/data
opendde/stock/src/opendde/data
pxdesign/stock/src/PXDesign/pxdesign/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
pxdesign/stock/src/Protenix/protenix/data
...
 589:594 (<1%)
549:554 (<1%)
577:582 (<1%)
585:590 (<1%)
573:578 (<1%)
595:600 (<1%)
620:625 (<1%)
643:648 (<1%)
657:662 (<1%)
682:687 (<1%)
...
 view
6 x 40 protenix_v2/stock/src/protenix/data
pxdesign/stock/src/Protenix/protenix/data
opendde/stock/src/opendde/data
pxdesign/stock/src/PXDesign/pxdesign/data
pxdesign/stock/src/Protenix/protenix/data
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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6 x 36 af3_jax/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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6 x 36 af3_jax/opt
openfold3_ob0/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
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boltzgen/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
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boltzgen/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
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...
 36:43 (8%)
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
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...
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...
 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
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...
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 92:99 (8%)
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
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...
 77:82 (8%)
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 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 47:52 (8%)
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...
 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 62:67 (8%)
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...
 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 70:75 (8%)
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...
 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 64:69 (8%)
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64:69 (8%)
...
 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 80:87 (8%)
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...
 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 97:102 (8%)
97:102 (8%)
97:102 (8%)
97:102 (8%)
97:102 (8%)
97:102 (8%)
97:102 (8%)
97:102 (8%)
97:102 (8%)
97:102 (8%)
...
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6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 24:29 (8%)
24:29 (8%)
24:29 (8%)
24:29 (8%)
24:29 (8%)
24:29 (8%)
24:29 (8%)
24:29 (8%)
24:29 (8%)
24:29 (8%)
...
 view
6 x 36 af3_jax/opt
openfold3_ob0/opt
chrombpnet/opt
opendde/opt
gpnstar/opt
openfold3/opt
boltzgen/opt
evo2/opt
borzoi/opt
esmc/opt
...
 51:58 (8%)
51:58 (8%)
51:58 (8%)
51:58 (8%)
51:58 (8%)
51:58 (8%)
51:58 (8%)
51:58 (8%)
51:58 (8%)
51:58 (8%)
...
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Duplicated Units
The list of top 50 duplicated units.
See data for all 1,773 unit duplicates...
Size#FoldersFilesLinesCode
210 x 2 openfold3_ob0/opt/openfold3_ob0_opt
openfold3/opt/openfold3_opt
 347:566 
347:566 
 view
181 x 2 openfold3_ob0/opt/openfold3_ob0_opt/cells
openfold3/opt/openfold3_opt/cells
 105:293 
105:293 
 view
177 x 2 openfold3_ob0/opt/openfold3_ob0_opt
openfold3/opt/openfold3_opt
 280:470 
280:470 
 view
153 x 3 protenix_v2/stock/src/protenix/data/core
pxdesign/stock/src/PXDesign/pxdesign/data
pxdesign/stock/src/Protenix/protenix/data
 1036:1205 
920:1089 
922:1091 
 view
119 x 2 openfold3_ob0/stock/src/scripts/dev
openfold3/stock/src/scripts/dev
 22:157 
22:157 
 view
115 x 2 protenix_v2/stock/src/protenix/web_service
pxdesign/stock/src/Protenix/protenix/web_service
 334:461 
251:378 
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118 x 3 protenix_v2/opt/forward/PTX_TP/PTX_TP_ADDON/ptx_tp
openfold3_ob0/opt/forward/offload/of3o
openfold3/opt/forward/offload/of3o
 311:434 
296:419 
297:420 
 view
107 x 2 openfold3_ob0/opt/openfold3_ob0_opt
openfold3/opt/openfold3_opt
 473:592 
473:592 
 view
111 x 2 openfold3_ob0/opt/forward/offload/of3o
openfold3/opt/forward/offload/of3o
 446:562 
447:563 
 view
131 x 2 pxdesign/stock/src/PXDesign/pxdesign/data
pxdesign/stock/src/Protenix/protenix/data
 1188:1341 
1190:1343 
 view
101 x 2 openfold3_ob0/opt/forward/offload/of3o
openfold3/opt/forward/offload/of3o
 569:673 
570:674 
 view
105 x 2 protenix_v2/stock/src/protenix/tfg
opendde/stock/src/opendde/tfg
 1177:1299 
1179:1301 
 view
146 x 2 openfold3_ob0/stock/src/.../primitives/permutation
openfold3/stock/src/open.../primitives/permutation
 352:537 
306:491 
 view
102 x 2 openfold3_ob0/stock/src/.../data/primitives/caches
openfold3/stock/src/open.../data/primitives/caches
 218:336 
217:335 
 view
83 x 2 openfold3_ob0/opt/forward/offload/of3o
openfold3/opt/forward/offload/of3o
 147:239 
199:291 
 view
95 x 2 openfold3_ob0/stock/src/...mitives/quality_control
openfold3/stock/src/open...mitives/quality_control
 319:423 
319:423 
 view
82 x 2 protenix_v2/opt/forward/.../infopt_graphs/protenix
protenix_v1/opt/forward/.../infopt_graphs/protenix
 471:554 
452:535 
 view
78 x 2 protenix_v2/stock/src/protenix/tfg
opendde/stock/src/opendde/tfg
 897:980 
899:982 
 view
79 x 2 protenix_v2/stock/src/protenix/web_service
pxdesign/stock/src/Protenix/protenix/web_service
 268:352 
267:351 
 view
74 x 2 common/opt_core/opt_core/kernels/apb/ef2
ef2inv/opt/forward/ESMFO...FAST_INFERENCE_KIT_v1/k
 218:297 
218:297 
 view
77 x 2 openfold3_ob0/opt/openfold3_ob0_opt/tp_rowpair
openfold3/opt/openfold3_opt/tp_rowpair
 383:461 
360:438 
 view
100 x 2 openfold3_ob0/stock/src/...amework/single_datasets
openfold3/stock/src/open...amework/single_datasets
 254:367 
251:364 
 view
74 x 2 protenix_v2/stock/src/protenix/utils
pxdesign/stock/src/Protenix/protenix/utils
 256:335 
256:335 
 view
66 x 2 protenix_v2/stock/src/protenix/data/constraint
pxdesign/stock/src/Protenix/protenix/data
 1282:1351 
1252:1321 
 view
66 x 2 openfold3_ob0/stock/src/openfold3/core/metrics
openfold3/stock/src/openfold3/core/metrics
 33:109 
33:109 
 view
72 x 2 openfold3_ob0/stock/src/openfold3/entry_points
openfold3/stock/src/openfold3/entry_points
 36:122 
36:122 
 view
66 x 2 openfold3_ob0/stock/src/openfold3/core/data/tools
openfold3/stock/src/openfold3/core/data/tools
 99:172 
99:172 
 view
84 x 2 openfold3_ob0/stock/src/...3/core/data/io/sequence
openfold3/stock/src/open...3/core/data/io/sequence
 653:747 
649:743 
 view
64 x 2 protenix_v2/opt/forward/flashpairformer/src
protenix_v1/opt/forward/v05_addon/lib
 58:124 
48:114 
 view
64 x 2 openfold3_ob0/stock/src/scripts/utils
openfold3/stock/src/scripts/utils
 114:184 
114:184 
 view
59 x 2 common/opt_core/opt_core/kernels/trimul/esm_v5
common/opt_core/opt_core...ul/esm_v61/pkg/v6.1/src
 94:154 
93:153 
 view
59 x 2 openfold3_ob0/opt/openfold3_ob0_opt/cells
openfold3/opt/openfold3_opt/cells
 487:547 
487:547 
 view
70 x 2 openfold3_ob0/stock/src/...ld3/core/data/resources
openfold3/stock/src/openfold3/core/data/resources
 224:297 
223:296 
 view
58 x 2 common/opt_core/opt_core/kernels/apb/ef2
ef2inv/opt/forward/ESMFO...FAST_INFERENCE_KIT_v1/k
 68:127 
68:127 
 view
65 x 2 protenix_v2/stock/src/protenix/tfg
opendde/stock/src/opendde/tfg
 1301:1379 
1303:1381 
 view
74 x 2 protenix_v2/stock/src/pr...ation/chain_permutation
pxdesign/stock/src/Prote...ation/chain_permutation
 460:547 
460:547 
 view
56 x 2 protenix_v2/stock/src/protenix/data/core
opendde/stock/src/opendde/data/core
 536:596 
538:598 
 view
57 x 2 openfold3_ob0/stock/src/scripts/snakemake_msa
openfold3/stock/src/scripts/snakemake_msa
 141:204 
141:204 
 view
55 x 2 openfold3_ob0/opt/openfold3_ob0_opt
openfold3/opt/openfold3_opt
 211:277 
211:277 
 view
66 x 2 openfold3_ob0/stock/src/...amework/single_datasets
openfold3/stock/src/open...amework/single_datasets
 171:251 
168:248 
 view
63 x 2 protenix_v2/stock/src/protenix/data/inference
pxdesign/stock/src/Protenix/protenix/data
 210:284 
153:227 
 view
57 x 2 protenix_v2/stock/src/protenix/data/core
opendde/stock/src/opendde/data/core
 204:263 
206:265 
 view
48 x 2 common/opt_core/opt_core/kernels/trimul/esm_v5
common/opt_core/opt_core...ul/esm_v61/pkg/v6.1/src
 162:211 
161:210 
 view
52 x 3 caliby/opt/forward/xattempt_addon/fast
caliby/opt/forward/xattempt_addon/stock
caliby/stock/src/protpar...c/src/protpardelle/core
 365:424 
365:424 
365:424 
 view
68 x 2 openfold3_ob0/stock/src/...3/projects/of3_all_atom
openfold3/stock/src/open...3/projects/of3_all_atom
 610:694 
601:685 
 view
47 x 2 protenix_v2/stock/src/protenix/web_service
pxdesign/stock/src/Protenix/protenix/web_service
 430:491 
430:491 
 view
63 x 2 pxdesign/stock/src/PXDesign/pxdesign/data
pxdesign/stock/src/Protenix/protenix/data
 385:460 
386:461 
 view
53 x 2 openfold3_ob0/stock/src/...ta/primitives/structure
openfold3/stock/src/open...ta/primitives/structure
 556:614 
533:591 
 view
55 x 2 mosaic/stock/src/boltz/src/boltz
boltz2/stock/src/boltz
 198:258 
198:258 
 view
56 x 2 protenix_v2/stock/src/protenix/data/core
opendde/stock/src/opendde/data/core
 640:701 
642:703 
 view
About This Analysis
  • For duplication, we look at places in code where there are 6 or more lines of code that are exactly the same.
  • Before duplication is calculated, the code is cleaned to remove empty lines, comments, and frequently duplicated constructs such as imports.
  • You should aim at having as little as possible (<5%) of duplicated code as high-level of duplication can lead to maintenance difficulties, poor factoring, and logical contradictions.
Learn more...