anthropics/uplifting-biomolecular-modeling
Features of Interest
Aspects in the source code identified through RegEx patterns.
Overview

GENERAL

TODOs
81,133 LOC (11%) 203 files | found text per file | found text
1 GENERAL Concerns
  • The "general" group contains 2 concerns.
    • TODOs
    • Unclassified
general
1.1 TODOs


scope details...
  • The following criteria are used to filter files:
    • files with any line of content like ".*(TODO|FIXME)( |:| ).*".
  • 203 files match defined criteria (81,133 LOC, 11.2% vs. main code):
    • 202 py files (80,647 LOC)
    • 1 toml files (486 LOC)
  • 456 lines match the content pattern.
details...

per component - primary logical decomposition

openfold3_ob0in 76 files, 23,730 LOC (36%)
openddein 2 files, 927 LOC (1%)
openfold3in 79 files, 22,978 LOC (38%)
protenix_v2in 5 files, 5,213 LOC (9%)
pxdesignin 5 files, 3,485 LOC (8%)
esmfold2in 2 files, 1,030 LOC (3%)
boltz2in 1 file 1,076 LOC (3%)
atlasfoldin 6 files, 1,623 LOC (6%)
chai1in 3 files, 1,182 LOC (6%)
calibyin 3 files, 4,856 LOC (31%)
rosettafold3in 3 files, 733 LOC (5%)
mosaicin 4 files, 3,894 LOC (30%)
evo2in 4 files, 2,252 LOC (20%)
colabfoldin 1 file 1,875 LOC (19%)
boltzgenin 2 files, 1,750 LOC (19%)
colabdesignin 2 files, 473 LOC (5%)
rfdiffusion3in 1 file 528 LOC (7%)
genie3in 2 files, 405 LOC (5%)
chrombpnetin 1 file 2,610 LOC (39%)
complexain 1 file 513 LOC (20%)
About This Analysis
  • Features of interest are any aspects of a software system that can be identified through patterns in code.
  • Features of interest provide you with a way to focus your attention on relevant parts of the codebase.
  • Typical examples include, security, TODOs, logging.
  • A feature of interest may be present in multiple files. Any source code file may be in zero or multiple features of interest.